BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645419|ref|NP_207593.1| molybdopterin converting
factor, subunit 2 (moaE) [Helicobacter pylori 26695]
         (145 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1FM0|E  Chain E, Molybdopterin Synthase (MoadMOAE) >gi|1...    29  0.19
pdb|1I8T|A  Chain A, Strcuture Of Udp-Galactopyranose Mutase...    25  2.7
pdb|1QQE|A  Chain A, Crystal Structure Of The Vesicular Tran...    24  6.0
pdb|1RUX|A  Chain A, Maximum Likelihood Refinement Of Adenov...    24  6.0
pdb|1L1Y|A  Chain A, The Crystal Structure And Catalytic Mec...    24  7.8
pdb|1FA2|A  Chain A, Crystal Structure Of Beta-Amylase From ...    24  7.8
pdb|1GW5|S  Chain S, Ap2 Clathrin Adaptor Core                     24  7.8

>pdb|1FM0|E Chain E, Molybdopterin Synthase (MoadMOAE)
 pdb|1FMA|E Chain E, Molybdopterin Synthase (MoadMOAE)
          Length = 150

 Score = 29.3 bits (64), Expect = 0.19
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 28  GAFCVFVGIVRKE---DNIQGLSFDIYEALLKTWFEKWHHKAKD---LGVVLKMAHSLGD 81
           GA   F G VR     D++  L+ + Y  + +    +   +A++   LG V  + H +G+
Sbjct: 29  GAVVTFTGKVRNHNLGDSVNALTLEHYPGMTEKALAEIVDEARNRWPLGRVT-VIHRIGE 87

Query: 82  VLIGQSSFLCVSMGKNRKNALELYENFIEDFKHNAPIWK 120
           +  G           +R +A E  +  ++  K  AP WK
Sbjct: 88  LWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWK 126



>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
 pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
          Length = 367

 Score = 25.4 bits (54), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (61%), Gaps = 1/32 (3%)

Query: 39  KEDNIQGLSFDIYEALLKTWFEK-WHHKAKDL 69
           +E  I  +  D+Y+AL+K + EK W   AK+L
Sbjct: 132 EEQAISLVGEDLYQALIKGYTEKQWGRSAKEL 163



>pdb|1QQE|A Chain A, Crystal Structure Of The Vesicular Transport Protein Sec17
          Length = 292

 Score = 24.3 bits (51), Expect = 6.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 88  SFLCVSMGKNRKNALELYENFIEDFKH 114
           ++ C   G N  NA++  EN I+ F H
Sbjct: 83  AYKCFKSGGNSVNAVDSLENAIQIFTH 109



>pdb|1RUX|A Chain A, Maximum Likelihood Refinement Of Adenovirus Type 5 Hexon
           With Tnt
          Length = 951

 Score = 24.3 bits (51), Expect = 6.0
 Identities = 10/36 (27%), Positives = 18/36 (49%)

Query: 99  KNALELYENFIEDFKHNAPIWKYDLIHNKRIYAKER 134
           KN + +  NF  +   NA +W+  L  N  +Y  ++
Sbjct: 448 KNEIRVGNNFAMEINLNANLWRNFLYSNIALYLPDK 483



>pdb|1L1Y|A Chain A, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L1Y|B Chain B, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L1Y|C Chain C, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L1Y|D Chain D, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L1Y|E Chain E, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L1Y|F Chain F, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L2A|A Chain A, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L2A|B Chain B, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L2A|C Chain C, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L2A|D Chain D, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L2A|E Chain E, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L2A|F Chain F, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
          Length = 678

 Score = 23.9 bits (50), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 109 IEDFKHNAPIWKYDLIHNKRIYAKE 133
           IE+FK+  P    DL    R YAK+
Sbjct: 223 IEEFKYGGPNGFLDLFTKDRSYAKQ 247



>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
          Length = 498

 Score = 23.9 bits (50), Expect = 7.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 99  KNALELYENFIEDFKHN 115
           + ALE+Y +F+E F+ N
Sbjct: 149 RTALEMYRDFMESFRDN 165



>pdb|1GW5|S Chain S, Ap2 Clathrin Adaptor Core
          Length = 142

 Score = 23.9 bits (50), Expect = 7.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 90  LCVSMGKNRKNALELYENFIE---DFKHNAPIWKYDLIHN 126
           +CV +  N    LE   NF+E   ++ HN  + + DL+ N
Sbjct: 69  ICVDVNDNNLAYLEAIHNFVEVLNEYFHN--VCELDLVFN 106



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 869,209
Number of Sequences: 13198
Number of extensions: 34018
Number of successful extensions: 40
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 7
length of query: 145
length of database: 2,899,336
effective HSP length: 80
effective length of query: 65
effective length of database: 1,843,496
effective search space: 119827240
effective search space used: 119827240
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)