BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645420|ref|NP_207594.1| molybdopterin converting
factor, subunit 1 (moaD) [Helicobacter pylori 26695]
(74 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FM0|D Chain D, Molybdopterin Synthase (MoadMOAE) >gi|1... 34 0.003
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm D... 27 0.54
pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm Do... 24 2.7
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 24 2.7
pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Ma... 23 4.6
pdb|1BG6| Crystal Structure Of The N-(1-D-Carboxylethyl)-... 23 4.6
pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Es... 23 4.6
pdb|1NUK|A Chain A, Crystal Structure Of The Ligand-Binding... 23 6.0
pdb|1KGY|A Chain A, Crystal Structure Of The Ephb2-Ephrinb2... 23 6.0
pdb|1J6P|A Chain A, Crystal Structure Of Conserved Hypothet... 23 6.0
pdb|1HZI|A Chain A, Interleukin-4 Mutant E9a 23 7.8
pdb|1RCB| Interleukin 4 >gi|7245490|pdb|1IAR|A Chain A, I... 23 7.8
pdb|1ITL| Interleukin 4 (Il-4) Mutant With Additional Met... 23 7.8
pdb|1HIJ| Interleukin-4 Mutant With Arg 88 Replaced With ... 23 7.8
>pdb|1FM0|D Chain D, Molybdopterin Synthase (MoadMOAE)
pdb|1FMA|D Chain D, Molybdopterin Synthase (MoadMOAE)
pdb|1JW9|D Chain D, Structure Of The Native Moeb-Moad Protein Complex
pdb|1JWA|D Chain D, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JWB|D Chain D, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb- Moad Protein Complex
Length = 81
Score = 34.3 bits (77), Expect = 0.003
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 2 MVEVRFFGPIKEENFFIKANDLKELRAILQEKEGLKEWLGV----CAIALND-------- 49
M++V FF ++E + D E+ A E L++ + A+AL D
Sbjct: 1 MIKVLFFAQVRE----LVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDGKLLAAVN 56
Query: 50 HLIDNLNTPLKDGDVISLLPPVCGG 74
+ + + PL DGD ++ PPV GG
Sbjct: 57 QTLVSFDHPLTDGDEVAFFPPVTGG 81
>pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
Length = 297
Score = 26.6 bits (57), Expect = 0.54
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 30 LQEKEGLKEWLGVCAIALNDHLIDNLNTP 58
++ K+G + WLGV A+ LN + D+ TP
Sbjct: 208 IKNKKGTELWLGVDALGLNIYEHDDKLTP 236
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
Complex
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
Complex
Length = 294
Score = 24.3 bits (51), Expect = 2.7
Identities = 11/29 (37%), Positives = 19/29 (64%)
Query: 30 LQEKEGLKEWLGVCAIALNDHLIDNLNTP 58
++ K+G + WLGV A+ LN + ++ TP
Sbjct: 205 IKNKKGSELWLGVDALGLNIYEQNDRLTP 233
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 24.3 bits (51), Expect = 2.7
Identities = 11/29 (37%), Positives = 19/29 (64%)
Query: 30 LQEKEGLKEWLGVCAIALNDHLIDNLNTP 58
++ K+G + WLGV A+ LN + ++ TP
Sbjct: 208 IKNKKGSELWLGVDALGLNIYEQNDRLTP 236
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 23.5 bits (49), Expect = 4.6
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 11 IKEENFFIKANDLKELRAILQEKEGLKEW 39
+ EEN FI + +K+++AIL + +W
Sbjct: 668 VGEENIFIFGHTVKQVKAILAKGYDPVKW 696
>pdb|1BG6| Crystal Structure Of The N-(1-D-Carboxylethyl)-L-Norvaline
Dehydrogenase From Arthrobacter Sp. Strain 1c
Length = 359
Score = 23.5 bits (49), Expect = 4.6
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 22 DLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLPP 70
D + ++ I + E G+ A D L ++ +KD DVI ++ P
Sbjct: 36 DAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 84
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 23.5 bits (49), Expect = 4.6
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 11 IKEENFFIKANDLKELRAILQEKEGLKEW 39
+ EEN FI + +K+++AIL + +W
Sbjct: 669 VGEENIFIFGHTVKQVKAILAKGYDPVKW 697
>pdb|1NUK|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Ephb2 Receptor Tyrosine Kinase
Length = 183
Score = 23.1 bits (48), Expect = 6.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 4 EVRFFGPIKEENFFIKAND 22
EVR FGP+ F++ D
Sbjct: 143 EVRSFGPVSRNGFYLAFQD 161
>pdb|1KGY|A Chain A, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|B Chain B, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|C Chain C, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|D Chain D, Crystal Structure Of The Ephb2-Ephrinb2 Complex
Length = 181
Score = 23.1 bits (48), Expect = 6.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 4 EVRFFGPIKEENFFIKAND 22
EVR FGP+ F++ D
Sbjct: 144 EVRSFGPVSRNGFYLAFQD 162
>pdb|1J6P|A Chain A, Crystal Structure Of Conserved Hypothetical
Protein(Tm0936) From Thermotoga Maritima At 1.9 A
Resolution
Length = 418
Score = 23.1 bits (48), Expect = 6.0
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 6 RFFGPIKEENFFIKANDLKELR-----AILQE--KEGLKEWLGVCAIALNDHL 51
R+FG +K+ FF+ N L+ A +Q + G K LG A N+ L
Sbjct: 247 RYFGVLKDIPFFVSHNPASNLKLGNGIAPVQRXIEHGXKVTLGTDGAASNNSL 299
>pdb|1HZI|A Chain A, Interleukin-4 Mutant E9a
Length = 129
Score = 22.7 bits (47), Expect = 7.8
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 10 PIKEENFFIKANDLKELRAILQEK 33
P+KE N N L+ L+ I++EK
Sbjct: 100 PVKEANQSTLENFLERLKTIMREK 123
>pdb|1RCB| Interleukin 4
pdb|1IAR|A Chain A, Interleukin-4 RECEPTOR ALPHA CHAIN COMPLEX
pdb|2INT| Interleukin-4
pdb|1HIK| Interleukin-4 (Wild-Type)
pdb|1CYL| Interleukin 4 (Nmr, 20 Structures)
pdb|2CYK| Interleukin 4 (Nmr, Minimized Average Structure)
Length = 129
Score = 22.7 bits (47), Expect = 7.8
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 10 PIKEENFFIKANDLKELRAILQEK 33
P+KE N N L+ L+ I++EK
Sbjct: 100 PVKEANQSTLENFLERLKTIMREK 123
>pdb|1ITL| Interleukin 4 (Il-4) Mutant With Additional Met At N-Terminus
(Nmr, Energy-Minimized Structure)
pdb|1ITM| Interleukin 4 (Il-4) (Nmr, Minimized Average Structure)
Length = 130
Score = 22.7 bits (47), Expect = 7.8
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 10 PIKEENFFIKANDLKELRAILQEK 33
P+KE N N L+ L+ I++EK
Sbjct: 101 PVKEANQSTLENFLERLKTIMREK 124
>pdb|1HIJ| Interleukin-4 Mutant With Arg 88 Replaced With Gln (R88q)
Length = 129
Score = 22.7 bits (47), Expect = 7.8
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 10 PIKEENFFIKANDLKELRAILQEK 33
P+KE N N L+ L+ I++EK
Sbjct: 100 PVKEANQSTLENFLERLKTIMREK 123
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.145 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,494
Number of Sequences: 13198
Number of extensions: 15203
Number of successful extensions: 43
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 14
length of query: 74
length of database: 2,899,336
effective HSP length: 50
effective length of query: 24
effective length of database: 2,239,436
effective search space: 53746464
effective search space used: 53746464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)