BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645421|ref|NP_207595.1| GTP cyclohydrolase II
(ribA) [Helicobacter pylori 26695]
(192 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1NHR| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 28 0.89
pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase >gi|2221... 26 3.4
pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing... 25 4.4
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing... 25 5.8
pdb|1CFB| Drosophila Neuroglian (Chymotryptic Fragment Co... 25 7.5
pdb|1NHS| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 24 9.8
pdb|1NPX| Nadh Peroxidase (E.C.1.11.1.1) Non-Active Form ... 24 9.8
>pdb|1NHR| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Leu 40 Replaced
By Cys (L40c)
Length = 447
Score = 27.7 bits (60), Expect = 0.89
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 66 CDCGGALQMALERISKEGGLVIYL---RQEGRGIGLFNKVNAYALQDKGYDTIQANEMIG 122
C CG +Q+ LE K+ V Y+ + E RG+ +F+ A+Q K + + +++
Sbjct: 40 CSCG--MQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQ-VTVKDLVS 96
Query: 123 FKDDERDY 130
++ +Y
Sbjct: 97 GEERVENY 104
>pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|1L8A|B Chain B, E. Coli Pyruvate Dehydrogenase
Length = 886
Score = 25.8 bits (55), Expect = 3.4
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 71 ALQMALERISKEGGLVIYLRQEGRGIG---LFNKVNAYALQDKGYDTIQANEMIGFKDDE 127
AL + L+ S + LV + E R G LF ++ Y+ + Y ++ +K+DE
Sbjct: 501 ALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDE 560
Query: 128 RDYSVAGEILE 138
+ G+IL+
Sbjct: 561 K-----GQILQ 566
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 25.4 bits (54), Expect = 4.4
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 3/57 (5%)
Query: 71 ALQMALERISKEG--GLVIYLRQEGRGIGLFNKVNAYALQDKGYDTIQANEMIGFKD 125
A Q A +SK+G GLV+ +R G G+ A L D+G D + + G +D
Sbjct: 216 AAQQAFTELSKQGVAGLVLDIRNNGGGLFPAGVNVARXLVDRG-DLVLIADSQGIRD 271
>pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 25.0 bits (53), Expect = 5.8
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 3/57 (5%)
Query: 71 ALQMALERISKEG--GLVIYLRQEGRGIGLFNKVNAYALQDKGYDTIQANEMIGFKD 125
A Q A +SK+G GLV+ +R G G+ A L D+G D + + G +D
Sbjct: 216 AAQQAFTELSKQGVAGLVLDIRNNGGGLFPAGVNVARMLVDRG-DLVLIADSQGIRD 271
>pdb|1CFB| Drosophila Neuroglian (Chymotryptic Fragment Containing The Two
Amino Proximal Fibronectin Type Iii Repeats (Residues
610 - 814))
Length = 205
Score = 24.6 bits (52), Expect = 7.5
Identities = 7/27 (25%), Positives = 16/27 (58%)
Query: 102 VNAYALQDKGYDTIQANEMIGFKDDER 128
+ A+ D+G + A E++G+ ++R
Sbjct: 179 IKVVAINDRGESNVAAEEVVGYSGEDR 205
>pdb|1NHS| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Ser 41 Replaced
By Cys (S41c)
Length = 447
Score = 24.3 bits (51), Expect = 9.8
Identities = 16/66 (24%), Positives = 33/66 (49%), Gaps = 6/66 (9%)
Query: 68 CGGALQMALERISKEGGLVIYL---RQEGRGIGLFNKVNAYALQDKGYDTIQANEMIGFK 124
CG +Q+ LE K+ V Y+ + E RG+ +F+ A+Q K + + +++ +
Sbjct: 42 CG--MQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQ-VTVKDLVSGE 98
Query: 125 DDERDY 130
+ +Y
Sbjct: 99 ERVENY 104
>pdb|1NPX| Nadh Peroxidase (E.C.1.11.1.1) Non-Active Form With Cys 42
Oxidized To A Sulfonic Acid (Cys42-So3h)
pdb|2NPX| Nadh Peroxidase (E.C.1.11.1.1) With Cys 42 Oxidized To A Sulfonic
Acid (Cys42-So3h)
Length = 447
Score = 24.3 bits (51), Expect = 9.8
Identities = 16/66 (24%), Positives = 33/66 (49%), Gaps = 6/66 (9%)
Query: 68 CGGALQMALERISKEGGLVIYL---RQEGRGIGLFNKVNAYALQDKGYDTIQANEMIGFK 124
CG +Q+ LE K+ V Y+ + E RG+ +F+ A+Q K + + +++ +
Sbjct: 42 CG--MQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQ-VTVKDLVSGE 98
Query: 125 DDERDY 130
+ +Y
Sbjct: 99 ERVENY 104
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,132,842
Number of Sequences: 13198
Number of extensions: 45797
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 7
length of query: 192
length of database: 2,899,336
effective HSP length: 83
effective length of query: 109
effective length of database: 1,803,902
effective search space: 196625318
effective search space used: 196625318
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)