BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645423|ref|NP_207597.1| GTP cyclohydrolase
II/3,4-dihydroxy-2-butanone 4-phosphate synthase (ribA, ribB)
[Helicobacter pylori 26695]
(344 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G57|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Bu... 181 1e-46
pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-B... 181 1e-46
pdb|1K4I|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Bu... 164 1e-41
pdb|1A3Y|B Chain B, Odorant Binding Protein From Nasal Muco... 27 2.6
pdb|1DZP|A Chain A, Porcine Odorant Binding Protein Complex... 27 2.6
pdb|1A3Y|A Chain A, Odorant Binding Protein From Nasal Muco... 27 2.6
pdb|1HQ8|A Chain A, Crystal Structure Of The Murine Nk Cell... 27 4.4
pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicycloba... 26 5.8
pdb|1IJK|B Chain B, The Von Willebrand Factor Mutant (I546v... 26 7.6
pdb|1HZU|A Chain A, Domain Swing Upon His To Ala Mutation I... 25 9.9
pdb|1HZV|A Chain A, Domain Swing Upon His To Ala Mutation I... 25 9.9
pdb|1GJQ|A Chain A, Pseudomonas Aeruginosa Cd1 Nitrite Redu... 25 9.9
>pdb|1G57|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G58|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
pdb|1G58|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
Length = 217
Score = 181 bits (458), Expect = 1e-46
Identities = 92/202 (45%), Positives = 130/202 (63%), Gaps = 3/202 (1%)
Query: 4 KRVTEALEAYKNGEMLIVMDDEDRENEGDLVLAGIFSTPEKINFMATHARGLICVSLTKD 63
+RV AL A + G ++V+DDEDRENEGD++ T E++ H G++C+ +T+D
Sbjct: 14 ERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITED 73
Query: 64 LAKKFELPPMVSVNDSNHETAFTVSIDAKEA-RTGISAFERHLTIELLCKDTTKPSDFVR 122
K+ +LP MV N S + T FTV+I+A E TG+SA +R T+ D KPSD R
Sbjct: 74 RRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNR 133
Query: 123 PGHIFPLIAKDGGVLARTGHTEASVDLCKLAGLKPVSVICEIMKEDGSMARRGDKFLSDF 182
PGH+FPL A+ GGVL R GHTEA++DL LAG KP V+CE+ +DG+MAR + +F
Sbjct: 134 PGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPE--CIEF 191
Query: 183 ALKHNLKTLYVSDLISYRLENE 204
A KHN+ + + DL++YR +E
Sbjct: 192 ANKHNMALVTIEDLVAYRQAHE 213
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Riboflavin Biosynthesis
Length = 217
Score = 181 bits (458), Expect = 1e-46
Identities = 92/202 (45%), Positives = 130/202 (63%), Gaps = 3/202 (1%)
Query: 4 KRVTEALEAYKNGEMLIVMDDEDRENEGDLVLAGIFSTPEKINFMATHARGLICVSLTKD 63
+RV AL A + G ++V+DDEDRENEGD++ T E++ H G++C+ +T+D
Sbjct: 14 ERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITED 73
Query: 64 LAKKFELPPMVSVNDSNHETAFTVSIDAKEA-RTGISAFERHLTIELLCKDTTKPSDFVR 122
K+ +LP MV N S + T FTV+I+A E TG+SA +R T+ D KPSD R
Sbjct: 74 RRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNR 133
Query: 123 PGHIFPLIAKDGGVLARTGHTEASVDLCKLAGLKPVSVICEIMKEDGSMARRGDKFLSDF 182
PGH+FPL A+ GGVL R GHTEA++DL LAG KP V+CE+ +DG+MAR + +F
Sbjct: 134 PGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPE--CIEF 191
Query: 183 ALKHNLKTLYVSDLISYRLENE 204
A KHN+ + + DL++YR +E
Sbjct: 192 ANKHNMALVTIEDLVAYRQAHE 213
>pdb|1K4I|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Magnesium Ions
pdb|1K4P|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Zinc Ions
pdb|1K4O|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With One Manganese, And A Glycerol
pdb|1K4L|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Manganese Ions
pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase (Cation Free Form)
Length = 233
Score = 164 bits (415), Expect = 1e-41
Identities = 92/215 (42%), Positives = 132/215 (60%), Gaps = 13/215 (6%)
Query: 6 VTEALEAYKNGEMLIVMDDEDRENEGDLVLAGIFSTPEKINFMATHARGLICVSLTKDLA 65
+ + ++A+KNGE ++V+DD RENE DL++A T E++ FM H+ GLIC LT +
Sbjct: 15 IPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERT 74
Query: 66 KKFELPPMVSVNDSNHETAFTVSIDAK--EARTGISAFERHLTIELLCKDTTKPSDFVRP 123
+LP MV+ N TA+TVS+DA+ TGISA +R L +L +PS F RP
Sbjct: 75 TALDLPQMVTHNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRP 134
Query: 124 GHIFPLIAKDGGVLARTGHTEASVDLCKLAGLKPVSVICEIMKE----DGSMAR------ 173
GH+FPL A GGV AR GHTEA V+LC+LAG +PV+VI EI+ + +G R
Sbjct: 135 GHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAAPGML 194
Query: 174 RGDKFLSDFALKHNLKTLYVSDLISYRLENESLLK 208
RGD+ ++ FA + LK + D+I++ + E L+
Sbjct: 195 RGDECVA-FARRWGLKVCTIEDMIAHVEKTEGKLE 228
>pdb|1A3Y|B Chain B, Odorant Binding Protein From Nasal Mucosa Of Pig
Length = 149
Score = 27.3 bits (59), Expect = 2.6
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 269 FEVFFKALEYLKHEGGYLIFMNTHSKENNVVKDFGI 304
F+VF +++E+ E +++N SKEN + ++F +
Sbjct: 27 FQVFMRSIEFDDKESK--VYLNFFSKENGICEEFSL 60
>pdb|1DZP|A Chain A, Porcine Odorant Binding Protein Complexed With
Diphenylmethanone
pdb|1E00|A Chain A, Porcine Odorant Binding Protein Complexed With
2,6-Dimethyl-7-Octen-2-Ol
pdb|1DZM|A Chain A, Porcine Odorant Binding Protein Complexed With Benzoic
Acid Phenylmethylester
pdb|1E06|A Chain A, Porcine Odorant Binding Protein Complexed With
5-Methyl-2-(1-Methylethyl)phenol
pdb|1E02|A Chain A, Porcine Odorant Binding Protein Complexed With Undecanal
pdb|1HQP|A Chain A, Crystal Structure Of A Truncated Form Of Porcine Odorant-
Binding Protein
pdb|1DZK|A Chain A, Porcine Odorant Binding Protein Complexed With Pyrazine
(2-Isobutyl-3-Metoxypyrazine)
pdb|1DZK|B Chain B, Porcine Odorant Binding Protein Complexed With Pyrazine
(2-Isobutyl-3-Metoxypyrazine)
pdb|1E00|B Chain B, Porcine Odorant Binding Protein Complexed With
2,6-Dimethyl-7-Octen-2-Ol
pdb|1DZJ|A Chain A, Porcine Odorant Binding Protein Complexed With
2-Amino-4-Butyl-5-Propylselenazole
pdb|1DZJ|B Chain B, Porcine Odorant Binding Protein Complexed With
2-Amino-4-Butyl-5-Propylselenazole
pdb|1DZP|B Chain B, Porcine Odorant Binding Protein Complexed With
Diphenylmethanone
pdb|1DZM|B Chain B, Porcine Odorant Binding Protein Complexed With Benzoic
Acid Phenylmethylester
pdb|1E06|B Chain B, Porcine Odorant Binding Protein Complexed With
5-Methyl-2-(1-Methylethyl)phenol
pdb|1E02|B Chain B, Porcine Odorant Binding Protein Complexed With Undecanal
Length = 157
Score = 27.3 bits (59), Expect = 2.6
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 269 FEVFFKALEYLKHEGGYLIFMNTHSKENNVVKDFGI 304
F+VF +++E+ E +++N SKEN + ++F +
Sbjct: 35 FQVFMRSIEFDDKESK--VYLNFFSKENGICEEFSL 68
>pdb|1A3Y|A Chain A, Odorant Binding Protein From Nasal Mucosa Of Pig
Length = 149
Score = 27.3 bits (59), Expect = 2.6
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 269 FEVFFKALEYLKHEGGYLIFMNTHSKENNVVKDFGI 304
F+VF +++E+ E +++N SKEN + ++F +
Sbjct: 27 FQVFMRSIEFDDKESK--VYLNFFSKENGICEEFSL 60
>pdb|1HQ8|A Chain A, Crystal Structure Of The Murine Nk Cell-Activating
Receptor Nkg2d At 1.95 A
pdb|1JSK|A Chain A, Crystal Structure Of Murine Nk Cell Ligand Rae-1 Beta In
Complex With Nkg2d
pdb|1JSK|B Chain B, Crystal Structure Of Murine Nk Cell Ligand Rae-1 Beta In
Complex With Nkg2d
Length = 123
Score = 26.6 bits (57), Expect = 4.4
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 202 ENESLLKMFCQEEREFLK 219
+N SLLK++ +EE++FLK
Sbjct: 37 QNSSLLKIYSKEEQDFLK 54
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 26.2 bits (56), Expect = 5.8
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 234 NHYAFKFKGAKTHDLAPLVRFHPIKEDFDFLTTDAFEVFFKALEYLKHE 282
NH F G T + V H ++ F DA++V +A+EYLK E
Sbjct: 430 NHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKRE 478
>pdb|1IJK|B Chain B, The Von Willebrand Factor Mutant (I546v) A1 Domain-
Botrocetin Complex
pdb|1FVU|C Chain C, Crystal Structure Of Botrocetin
pdb|1FVU|A Chain A, Crystal Structure Of Botrocetin
Length = 133
Score = 25.8 bits (55), Expect = 7.6
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 282 EGGYLIFMNTHSKENNVVKDFGIGALVLKNLGIKD 316
+GG+L+ + +SKE KDF +G LV KN+ D
Sbjct: 35 KGGHLVSIKIYSKE----KDF-VGDLVTKNIQSSD 64
>pdb|1HZU|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 25.4 bits (54), Expect = 9.9
Identities = 16/61 (26%), Positives = 33/61 (53%), Gaps = 6/61 (9%)
Query: 273 FKALEYLKHEGGYLIFMNTHSKENNVVKD--FGIGALVLKNLGIKDFRLLSSCEDRQYKA 330
+K + L+ +GG +F+ TH K +++ D F A + +++ + D + L D +Y+
Sbjct: 410 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL----DAKYQV 465
Query: 331 L 331
L
Sbjct: 466 L 466
>pdb|1HZV|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 25.4 bits (54), Expect = 9.9
Identities = 16/61 (26%), Positives = 33/61 (53%), Gaps = 6/61 (9%)
Query: 273 FKALEYLKHEGGYLIFMNTHSKENNVVKD--FGIGALVLKNLGIKDFRLLSSCEDRQYKA 330
+K + L+ +GG +F+ TH K +++ D F A + +++ + D + L D +Y+
Sbjct: 410 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL----DAKYQV 465
Query: 331 L 331
L
Sbjct: 466 L 466
>pdb|1GJQ|A Chain A, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
pdb|1GJQ|B Chain B, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
pdb|1NIR|B Chain B, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NNO|A Chain A, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NNO|B Chain B, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1N15|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1NIR|A Chain A, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1N15|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1BL9|A Chain A, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1BL9|B Chain B, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
Length = 543
Score = 25.4 bits (54), Expect = 9.9
Identities = 16/61 (26%), Positives = 33/61 (53%), Gaps = 6/61 (9%)
Query: 273 FKALEYLKHEGGYLIFMNTHSKENNVVKD--FGIGALVLKNLGIKDFRLLSSCEDRQYKA 330
+K + L+ +GG +F+ TH K +++ D F A + +++ + D + L D +Y+
Sbjct: 410 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL----DAKYQV 465
Query: 331 L 331
L
Sbjct: 466 L 466
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.139 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,915,967
Number of Sequences: 13198
Number of extensions: 76745
Number of successful extensions: 218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 12
length of query: 344
length of database: 2,899,336
effective HSP length: 89
effective length of query: 255
effective length of database: 1,724,714
effective search space: 439802070
effective search space used: 439802070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)