BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645425|ref|NP_207599.1| hypothetical protein
[Helicobacter pylori 26695]
(206 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 28 0.99
pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin... 27 1.3
pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein... 27 1.3
pdb|1LLI|B Chain B, Lambda Repressor Mutant With Val 36 Rep... 26 3.8
pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding P... 26 3.8
pdb|1LMB|4 Chain 4, Lambda RepressorOPERATOR COMPLEX >gi|44... 26 3.8
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed Wi... 25 4.9
pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g... 25 4.9
pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n... 25 4.9
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Gl... 25 4.9
pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t... 25 4.9
pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolae... 25 6.4
pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4 25 8.4
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 27.7 bits (60), Expect = 0.99
Identities = 20/72 (27%), Positives = 39/72 (53%), Gaps = 2/72 (2%)
Query: 45 LKEQEAWLKKTFLSMQEKHSLLRTNLEKYQNKILVFDEVKNANDYTLTELKKILK--TYL 102
+++Q L K ++E+ S L TNL + + K ++KN ++ ++EL+ LK
Sbjct: 995 MEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKS 1054
Query: 103 EQKLPLIAQKMQ 114
Q+L I +K++
Sbjct: 1055 RQELEKIKRKLE 1066
>pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWS|B Chain B, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWT|A Chain A, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWT|B Chain B, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWU|A Chain A, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|1MWU|B Chain B, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution
Length = 646
Score = 27.3 bits (59), Expect = 1.3
Identities = 28/118 (23%), Positives = 49/118 (40%), Gaps = 6/118 (5%)
Query: 4 DIPITIQKSKKIKTLSLNITPSLEVILKMPNSCSQTRASAFLKEQEAWL-----KKTFLS 58
DI I +K KK+ + ++ N + + F+KE W
Sbjct: 55 DINIQDRKIKKVSKNKKRVDAQYKIKTNYGNIDRNVQFN-FVKEDGMWKLDWDHSVIIPG 113
Query: 59 MQEKHSLLRTNLEKYQNKILVFDEVKNANDYTLTELKKILKTYLEQKLPLIAQKMQTS 116
MQ+ S+ NL+ + KIL + V+ AN T E+ + K ++ IA+++ S
Sbjct: 114 MQKDQSIHIENLKSERGKILDRNNVELANTGTAYEIGIVPKNVSKKDYKAIAKELSIS 171
>pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1MWX|B Chain B, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution
Length = 646
Score = 27.3 bits (59), Expect = 1.3
Identities = 28/118 (23%), Positives = 49/118 (40%), Gaps = 6/118 (5%)
Query: 4 DIPITIQKSKKIKTLSLNITPSLEVILKMPNSCSQTRASAFLKEQEAWL-----KKTFLS 58
DI I +K KK+ + ++ N + + F+KE W
Sbjct: 55 DINIQDRKIKKVSKNKKRVDAQYKIKTNYGNIDRNVQFN-FVKEDGMWKLDWDHSVIIPG 113
Query: 59 MQEKHSLLRTNLEKYQNKILVFDEVKNANDYTLTELKKILKTYLEQKLPLIAQKMQTS 116
MQ+ S+ NL+ + KIL + V+ AN T E+ + K ++ IA+++ S
Sbjct: 114 MQKDQSIHIENLKSERGKILDRNNVELANTGTAYEIGIVPKNVSKKDYKAIAKELSIS 171
>pdb|1LLI|B Chain B, Lambda Repressor Mutant With Val 36 Replaced By Leu, Met
40 Replaced By Leu, And Val 47 Replaced By Ile
(V36l,M40l,V47i) Complexed With Dna Operator
pdb|1LLI|A Chain A, Lambda Repressor Mutant With Val 36 Replaced By Leu, Met
40 Replaced By Leu, And Val 47 Replaced By Ile
(V36l,M40l,V47i) Complexed With Dna Operator
Length = 92
Score = 25.8 bits (55), Expect = 3.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 79 VFDEVKNANDYTLTELKKILKTYLEQKLPLIAQKMQTSY 117
+F+ + N Y L KILK +E+ P IA+++ Y
Sbjct: 50 LFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMY 88
>pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution.
pdb|1MWR|B Chain B, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution
Length = 646
Score = 25.8 bits (55), Expect = 3.8
Identities = 28/118 (23%), Positives = 50/118 (41%), Gaps = 6/118 (5%)
Query: 4 DIPITIQKSKKIKTLSLNITPSLEVILKMPNSCSQTRASAFLKEQEAWLKKTFLSM---- 59
DI I +K KK+ + ++ N + + F+KE W S+
Sbjct: 55 DINIQDRKIKKVSKNKKRVDAQYKIKTNYGNIDRNVQFN-FVKEDGXWKLDWDHSVIIPG 113
Query: 60 -QEKHSLLRTNLEKYQNKILVFDEVKNANDYTLTELKKILKTYLEQKLPLIAQKMQTS 116
Q+ S+ NL+ + KIL + V+ AN T E+ + K ++ IA+++ S
Sbjct: 114 XQKDQSIHIENLKSERGKILDRNNVELANTGTAYEIGIVPKNVSKKDYKAIAKELSIS 171
>pdb|1LMB|4 Chain 4, Lambda RepressorOPERATOR COMPLEX
pdb|1LMB|3 Chain 3, Lambda RepressorOPERATOR COMPLEX
pdb|1LRP| Lambda Repressor (N-Terminal Domain)
Length = 92
Score = 25.8 bits (55), Expect = 3.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 79 VFDEVKNANDYTLTELKKILKTYLEQKLPLIAQKMQTSY 117
+F+ + N Y L KILK +E+ P IA+++ Y
Sbjct: 50 LFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMY 88
>pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1GTR|A Chain A, Glutaminyl-Trna Synthetase (E.C.6.1.1.18) Complexed With
Trna And Atp (-8 Degrees C)
pdb|1GTS|A Chain A, Glutaminyl-Trna Synthetase (E.C.6.1.1.18) Complexed With
Trna And Amp (8 Degrees C)
pdb|1GSG|P Chain P, Glutaminyl-TRNA Synthetase (GlnRS) Complex With tRNAGln
And ATP
Length = 553
Score = 25.4 bits (54), Expect = 4.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 103 EQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKE 150
+ ++P I+ + YT SIR K +G N + A L C +++
Sbjct: 287 DPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 334
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 25.4 bits (54), Expect = 4.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 103 EQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKE 150
+ ++P I+ + YT SIR K +G N + A L C +++
Sbjct: 287 DPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 334
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 25.4 bits (54), Expect = 4.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 103 EQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKE 150
+ ++P I+ + YT SIR K +G N + A L C +++
Sbjct: 287 DPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 334
>pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna-Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
Length = 548
Score = 25.4 bits (54), Expect = 4.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 103 EQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKE 150
+ ++P I+ + YT SIR K +G N + A L C +++
Sbjct: 288 DPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 335
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 25.4 bits (54), Expect = 4.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 103 EQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKE 150
+ ++P I+ + YT SIR K +G N + A L C +++
Sbjct: 287 DPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 334
>pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid
Length = 342
Score = 25.0 bits (53), Expect = 6.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 127 KVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHT 163
K L C+YH +A+L A+K +D I +HT
Sbjct: 280 KDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHT 316
>pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4
Length = 225
Score = 24.6 bits (52), Expect = 8.4
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 51 WLKKTFLSMQEKHSLLRTNLE-KY-QNKILVFDEVKNANDYTLTELKKILKT-YLEQKLP 107
W KK L+ + K LR+ L KY +NK+LV D++K T LK+IL+ L K
Sbjct: 96 WSKK--LNKKMKKLALRSALSVKYRENKLLVLDDLKLERPKT-KSLKEILQNLQLSDKKT 152
Query: 108 LI 109
LI
Sbjct: 153 LI 154
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,047,608
Number of Sequences: 13198
Number of extensions: 36989
Number of successful extensions: 116
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 13
length of query: 206
length of database: 2,899,336
effective HSP length: 84
effective length of query: 122
effective length of database: 1,790,704
effective search space: 218465888
effective search space used: 218465888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)