BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645428|ref|NP_207602.1| hypothetical protein
[Helicobacter pylori 26695]
(183 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1UKZ| Uridylate Kinase (E.C.2.7.4.-) Complexed With A... 27 1.8
pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococc... 26 2.4
pdb|1SPF| Pulmonary Surfactant-Associated Polypeptide C(S... 26 3.1
pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase >g... 26 3.1
pdb|1FJK|A Chain A, Nmr Solution Structure Of Phospholamban... 25 5.3
pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondri... 25 5.3
pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine >gi|... 25 5.3
pdb|1FLC|B Chain B, X-Ray Structure Of The Haemagglutinin-E... 25 5.3
pdb|1FJP|A Chain A, Nmr Solution Structure Of Phospholamban... 25 5.3
pdb|1TCA| Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase... 25 6.9
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococc... 25 6.9
pdb|1GTX|A Chain A, 4-Aminobutyrate-Aminotransferase From P... 25 6.9
pdb|1CLM| Calmodulin (Paramecium Tetraurelia) (Wild Type) 25 6.9
pdb|1OSA| Calmodulin >gi|10835683|pdb|1EXR|A Chain A, The... 25 6.9
pdb|1CZ4|A Chain A, Nmr Structure Of Vat-N: The N-Terminal ... 24 9.0
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-... 24 9.0
>pdb|1UKZ| Uridylate Kinase (E.C.2.7.4.-) Complexed With Adp And Amp
pdb|1UKY| Uridylate Kinase (E.C.2.7.4.-) Complexed With Two Adp Molecules
Length = 203
Score = 26.6 bits (57), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (63%)
Query: 144 EEVVTNKGKNKLKDEIKSHLNSFLIDGF 171
+E+ +N + D +K++ + FLIDGF
Sbjct: 77 QEITLALLRNAISDNVKANKHKFLIDGF 104
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 26.2 bits (56), Expect = 2.4
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 135 IEILSSKSVEEVVTNKGKNKLKDEIKSHL 163
+++L+ ++EEV+T K + +K +I + L
Sbjct: 288 VDVLAPSAIEEVITKKNADNIKAKIVAEL 316
>pdb|1SPF| Pulmonary Surfactant-Associated Polypeptide C(Sp-C) (Nmr, 20
Structures)
Length = 35
Score = 25.8 bits (55), Expect = 3.1
Identities = 11/27 (40%), Positives = 19/27 (69%)
Query: 13 PKKSKALLFVIIGSVLVMLLLVGVIIM 39
P K LL V++ VLV++++VG ++M
Sbjct: 7 PVNLKRLLVVVVVVVLVVVVIVGALLM 33
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
Length = 419
Score = 25.8 bits (55), Expect = 3.1
Identities = 11/49 (22%), Positives = 27/49 (54%)
Query: 135 IEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDFIIQ 183
+++L+ ++EEV+T K + +K +I + + + + + F I+Q
Sbjct: 289 VDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQ 337
>pdb|1FJK|A Chain A, Nmr Solution Structure Of Phospholamban (C41f)
Length = 52
Score = 25.0 bits (53), Expect = 5.3
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 2 AEEQENTAQQPPKKSKAL--LFVIIGSVLVMLLLVGVIIMLL 41
A + +T + P + + L LF+ +L+ LLL+ +I+MLL
Sbjct: 11 AIRRASTIEMPQQARQNLQNLFINFCLILIFLLLICIIVMLL 52
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 25.0 bits (53), Expect = 5.3
Identities = 12/55 (21%), Positives = 27/55 (48%)
Query: 90 DAPFAVNLVSQNGRRYLKASISLELSNEKLLNEVKVKDTAIKDTIIEILSSKSVE 144
D P AV L++ + +E + +L E++ DT+++D + L + + +
Sbjct: 105 DLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQ 159
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
Length = 446
Score = 25.0 bits (53), Expect = 5.3
Identities = 12/55 (21%), Positives = 27/55 (48%)
Query: 90 DAPFAVNLVSQNGRRYLKASISLELSNEKLLNEVKVKDTAIKDTIIEILSSKSVE 144
D P AV L++ + +E + +L E++ DT+++D + L + + +
Sbjct: 105 DLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQ 159
>pdb|1FLC|B Chain B, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
pdb|1FLC|D Chain D, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
pdb|1FLC|F Chain F, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
Length = 175
Score = 25.0 bits (53), Expect = 5.3
Identities = 14/42 (33%), Positives = 27/42 (63%), Gaps = 2/42 (4%)
Query: 101 NGRRYLKASISLELSNEKLLNEVKVKDTAIKDTIIEILSSKS 142
N + LK+SI++ + EKL + + + AI+D +EI +++S
Sbjct: 50 NDIQILKSSINIAI--EKLNDRISHDEQAIRDLTLEIENARS 89
>pdb|1FJP|A Chain A, Nmr Solution Structure Of Phospholamban (C41f)
Length = 52
Score = 25.0 bits (53), Expect = 5.3
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 2 AEEQENTAQQPPKKSKAL--LFVIIGSVLVMLLLVGVIIMLL 41
A + +T + P + + L LF+ +L+ LLL+ +I+MLL
Sbjct: 11 AIRRASTIEMPQQARQNLQNLFINFCLILIFLLLICIIVMLL 52
>pdb|1TCA| Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1TCB|A Chain A, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1TCB|B Chain B, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1TCC|A Chain A, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1TCC|B Chain B, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBT| Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS| Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
Length = 317
Score = 24.6 bits (52), Expect = 6.9
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 51 NASKNTQEVQANPMANKNQEAK---EGSNIQQYLVLGPLYAIDAPFAVNLVSQ 100
N T E+ ++N ++ G N+Q V GPL+ ID A +L SQ
Sbjct: 181 NLYSATDEIVQPQVSNSPLDSSYLFNGKNVQAQAVCGPLFVID--HAGSLTSQ 231
>pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 24.6 bits (52), Expect = 6.9
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 135 IEILSSKSVEEVVTNKGKNKLKDEI 159
+++L+ ++EEV+T K + +K +I
Sbjct: 289 VDVLAPAAIEEVITEKNADNIKAKI 313
>pdb|1GTX|A Chain A, 4-Aminobutyrate-Aminotransferase From Pig
pdb|1GTX|B Chain B, 4-Aminobutyrate-Aminotransferase From Pig
pdb|1GTX|C Chain C, 4-Aminobutyrate-Aminotransferase From Pig
pdb|1GTX|D Chain D, 4-Aminobutyrate-Aminotransferase From Pig
Length = 472
Score = 24.6 bits (52), Expect = 6.9
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 117 EKLLNEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLID 169
E L+ + + K + I+E + S+ + ++ KL+D + H +FL+D
Sbjct: 246 EDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVD 298
>pdb|1CLM| Calmodulin (Paramecium Tetraurelia) (Wild Type)
Length = 148
Score = 24.6 bits (52), Expect = 6.9
Identities = 16/56 (28%), Positives = 26/56 (45%), Gaps = 4/56 (7%)
Query: 115 SNEKLLNEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDG 170
S E+L+ KV D ++S+ + V+TN G+ DE+ + IDG
Sbjct: 81 SEEELIEAFKVFDRDGNG----LISAAELRHVMTNLGEKLTDDEVDEMIREADIDG 132
>pdb|1OSA| Calmodulin
pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
Length = 148
Score = 24.6 bits (52), Expect = 6.9
Identities = 16/56 (28%), Positives = 26/56 (45%), Gaps = 4/56 (7%)
Query: 115 SNEKLLNEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDG 170
S E+L+ KV D ++S+ + V+TN G+ DE+ + IDG
Sbjct: 81 SEEELIEAFKVFDRDGNG----LISAAELRHVMTNLGEKLTDDEVDEMIREADIDG 132
>pdb|1CZ4|A Chain A, Nmr Structure Of Vat-N: The N-Terminal Domain Of Vat (Vcp-
Like Atpase Of Thermoplasma)
pdb|1CZ5|A Chain A, Nmr Structure Of Vat-N: The N-Terminal Domain Of Vat (Vcp-
Like Atpase Of Thermoplasma)
Length = 185
Score = 24.3 bits (51), Expect = 9.0
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 42 MGNKEESKENASKNTQEVQANPMANKNQEAKEGSNIQQYL 81
+G+K + ++ ++ ++V P+ K+Q K G I++Y+
Sbjct: 81 IGDKVKVRKVRTEIAKKVTLAPIIRKDQRLKFGEGIEEYV 120
>pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
Length = 459
Score = 24.3 bits (51), Expect = 9.0
Identities = 13/41 (31%), Positives = 21/41 (50%)
Query: 132 DTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFI 172
D +EI S +E VT KG+ K+ E ++++D I
Sbjct: 263 DIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTI 303
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.131 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 859,028
Number of Sequences: 13198
Number of extensions: 28731
Number of successful extensions: 74
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 16
length of query: 183
length of database: 2,899,336
effective HSP length: 83
effective length of query: 100
effective length of database: 1,803,902
effective search space: 180390200
effective search space used: 180390200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)