BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645429|ref|NP_207603.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(200 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E3O|C Chain C, Crystal Structure Of Oct-1 Pou Dimer Bo... 30 0.14
pdb|1A8D| Tetanus Toxin C Fragment >gi|3212428|pdb|1AF9| ... 26 2.7
pdb|1DLL|A Chain A, The Hc Fragement Of Tetanus Toxin Compl... 26 2.7
pdb|1FV3|A Chain A, The Hc Fragment Of Tetanus Toxin Comple... 26 2.7
pdb|1D0H|A Chain A, The Hc Fragment Of Tetanus Toxin Comple... 26 2.7
pdb|1DFQ|A Chain A, The Hc Fragment Of Tetanus Toxin Comple... 26 2.7
pdb|1DIW|A Chain A, The Hc Fragment Of Tetanus Toxin Comple... 26 2.7
pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin... 26 3.6
pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein... 26 3.6
pdb|1BY1|A Chain A, Dbl Homology Domain From Beta-Pix 25 4.7
pdb|1FPS| Avian Farnesyl Diphosphate Synthase (Fps) (E.C.... 25 8.0
pdb|1UBX| Structure Of Farnesyl Pyrophosphate Synthetase 25 8.0
pdb|1UBY| Structure Of Farnesyl Pyrophosphate Synthetase ... 25 8.0
pdb|1SMP|A Chain A, Mol_id: 1; Molecule: Serratia Metallo P... 25 8.0
>pdb|1E3O|C Chain C, Crystal Structure Of Oct-1 Pou Dimer Bound To More
Length = 160
Score = 30.4 bits (67), Expect = 0.14
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 18 KGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALSRGAKSAV 77
+ L L+ N+S +P + E + N +A ++ + S S G+E LSR K
Sbjct: 51 EALNLSFKNMSKLKP----LLEKWLNDAEANLSSDSSLSSPSALNSPGIEGLSRRRKKRT 106
Query: 78 FFEQN--KSAYKTLLEN-------ISLFKNRLKKEMEI 106
E N + K+ +EN I+L +L E E+
Sbjct: 107 SIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEV 144
>pdb|1A8D| Tetanus Toxin C Fragment
pdb|1AF9| Tetanus Neurotoxin C Fragment
Length = 452
Score = 26.2 bits (56), Expect = 2.7
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 122 LKNGVLNIIYL-DPPFETSGFLGIY-EKCFQALERLLKRFNPKN 163
LKN + + +YL + P T+G L IY + + L+ ++KR+ P N
Sbjct: 279 LKN-ITDYMYLTNAPSYTNGKLNIYYRRLYNGLKFIIKRYTPNN 321
>pdb|1DLL|A Chain A, The Hc Fragement Of Tetanus Toxin Complexed With Lactose
Length = 441
Score = 26.2 bits (56), Expect = 2.7
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 122 LKNGVLNIIYL-DPPFETSGFLGIY-EKCFQALERLLKRFNPKN 163
LKN + + +YL + P T+G L IY + + L+ ++KR+ P N
Sbjct: 268 LKN-ITDYMYLTNAPSYTNGKLNIYYRRLYNGLKFIIKRYTPNN 310
>pdb|1FV3|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV3|B Chain B, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV2|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
Length = 472
Score = 26.2 bits (56), Expect = 2.7
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 122 LKNGVLNIIYL-DPPFETSGFLGIY-EKCFQALERLLKRFNPKN 163
LKN + + +YL + P T+G L IY + + L+ ++KR+ P N
Sbjct: 299 LKN-ITDYMYLTNAPSYTNGKLNIYYRRLYNGLKFIIKRYTPNN 341
>pdb|1D0H|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With N-Acetyl-
Galactosamine
Length = 469
Score = 26.2 bits (56), Expect = 2.7
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 122 LKNGVLNIIYL-DPPFETSGFLGIY-EKCFQALERLLKRFNPKN 163
LKN + + +YL + P T+G L IY + + L+ ++KR+ P N
Sbjct: 296 LKN-ITDYMYLTNAPSYTNGKLNIYYRRLYNGLKFIIKRYTPNN 338
>pdb|1DFQ|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With Sialic
Acid
Length = 444
Score = 26.2 bits (56), Expect = 2.7
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 122 LKNGVLNIIYL-DPPFETSGFLGIY-EKCFQALERLLKRFNPKN 163
LKN + + +YL + P T+G L IY + + L+ ++KR+ P N
Sbjct: 271 LKN-ITDYMYLTNAPSYTNGKLNIYYRRLYNGLKFIIKRYTPNN 313
>pdb|1DIW|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With Galactose
Length = 441
Score = 26.2 bits (56), Expect = 2.7
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 122 LKNGVLNIIYL-DPPFETSGFLGIY-EKCFQALERLLKRFNPKN 163
LKN + + +YL + P T+G L IY + + L+ ++KR+ P N
Sbjct: 268 LKN-ITDYMYLTNAPSYTNGKLNIYYRRLYNGLKFIIKRYTPNN 310
>pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWS|B Chain B, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWT|A Chain A, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWT|B Chain B, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWU|A Chain A, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|1MWU|B Chain B, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution
Length = 646
Score = 25.8 bits (55), Expect = 3.6
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 82 NKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTL 120
+K YK + + +S+ ++ +K++M+ DD F L T+
Sbjct: 157 SKKDYKAIAKELSISEDYIKQQMDQNWVQDDTFVPLKTV 195
>pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1MWX|B Chain B, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution
Length = 646
Score = 25.8 bits (55), Expect = 3.6
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 82 NKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTL 120
+K YK + + +S+ ++ +K++M+ DD F L T+
Sbjct: 157 SKKDYKAIAKELSISEDYIKQQMDQNWVQDDTFVPLKTV 195
>pdb|1BY1|A Chain A, Dbl Homology Domain From Beta-Pix
Length = 209
Score = 25.4 bits (54), Expect = 4.7
Identities = 20/51 (39%), Positives = 25/51 (48%), Gaps = 3/51 (5%)
Query: 82 NKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNIIYL 132
NKS Y +L+NI +N K E+QT L + L T K NI YL
Sbjct: 10 NKSYYNVVLQNILETENEYSK--ELQTVLSTYLRPLQT-SEKLSSANISYL 57
>pdb|1FPS| Avian Farnesyl Diphosphate Synthase (Fps) (E.C.2.5.1.10)
Length = 348
Score = 24.6 bits (52), Expect = 8.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 76 AVFFEQNKSAYKTLLENISLFKNRLKKEM 104
A F + +S+Y+ L E I NRL KE+
Sbjct: 307 AAFQQYEESSYRRLQELIEKHSNRLPKEI 335
>pdb|1UBX| Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 24.6 bits (52), Expect = 8.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 76 AVFFEQNKSAYKTLLENISLFKNRLKKEM 104
A F + +S+Y+ L E I NRL KE+
Sbjct: 326 AAFQQYEESSYRRLQELIEKHSNRLPKEI 354
>pdb|1UBY| Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBW| Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBV| Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 24.6 bits (52), Expect = 8.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 76 AVFFEQNKSAYKTLLENISLFKNRLKKEM 104
A F + +S+Y+ L E I NRL KE+
Sbjct: 326 AAFQQYEESSYRRLQELIEKHSNRLPKEI 354
>pdb|1SMP|A Chain A, Mol_id: 1; Molecule: Serratia Metallo Proteinase; Chain:
A; Ec: 3.4.24.40; Mol_id: 2; Molecule: Erwinia
Chrysanthemi Inhibitor; Chain: I; Engineered: Yes
Length = 471
Score = 24.6 bits (52), Expect = 8.0
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 40 SFFNTLQAEINGAHFIEVFSGSASMGLEALSRGAKSAV 77
SFFN + HF++ FSG+A L LS A S V
Sbjct: 405 SFFNKEANSSDFIHFVDHFSGTAGEAL--LSYNASSNV 440
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.138 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,058,146
Number of Sequences: 13198
Number of extensions: 37349
Number of successful extensions: 77
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 14
length of query: 200
length of database: 2,899,336
effective HSP length: 84
effective length of query: 116
effective length of database: 1,790,704
effective search space: 207721664
effective search space used: 207721664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)