BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645430|ref|NP_207604.1| hypothetical protein
[Helicobacter pylori 26695]
(108 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamm... 26 0.57
pdb|1ONC| P-30 Protein 24 2.1
pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase C... 24 2.1
pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus 24 2.1
pdb|1G10|A Chain A, Toluene-4-Monooxygenase Catalytic Effec... 23 3.7
pdb|1BY1|A Chain A, Dbl Homology Domain From Beta-Pix 23 3.7
pdb|1FQ1|A Chain A, Crystal Structure Of Kinase Associated ... 23 3.7
pdb|1FQK|D Chain D, Crystal Structure Of The Heterodimeric ... 23 4.8
pdb|1FQI|A Chain A, Rgs9 Rgs Domain 23 4.8
pdb|3HAD|A Chain A, Biochemical Characterization And Struct... 23 6.3
pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coor... 23 6.3
pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Cros... 23 6.3
pdb|1HDJ| Human Hsp40 (Hdj-1), Nmr 23 6.3
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Compl... 23 6.3
pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Compl... 23 6.3
pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl C... 22 8.2
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosylt... 22 8.2
pdb|1IRJ|A Chain A, Crystal Structure Of The Mrp14 Complexe... 22 8.2
pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosylt... 22 8.2
pdb|1KRQ|A Chain A, Crystal Structure Analysis Of Campyloba... 22 8.2
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyl... 22 8.2
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 26.2 bits (56), Expect = 0.57
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Query: 82 EIQFSKEQ---KIKQLLEEYTHKLCQIISQ 108
+I+ ++E+ +I Q+ EEY H+LC+ I Q
Sbjct: 47 DIEITREEDFTRILQMEEEYIHQLCEDIIQ 76
>pdb|1ONC| P-30 Protein
Length = 104
Score = 24.3 bits (51), Expect = 2.1
Identities = 15/42 (35%), Positives = 20/42 (46%), Gaps = 8/42 (19%)
Query: 7 CKSLLIQRSL----EFYLSDCLSPMEVCDLVLSDDEKLETNK 44
CK ++ +++ EFYLSDC C L K TNK
Sbjct: 48 CKGIIASKNVLTTSEFYLSDCNVTSRPCKYKL----KKSTNK 85
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 24.3 bits (51), Expect = 2.1
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 31 DLVLSDDEKLETNKPLCFIEER--LRKPFTKQSVKEDIKNFYRALKTSEKPCEEI 83
DLVL DE+ E + + +EER LR P + + + + R LK S K +I
Sbjct: 744 DLVLEHDEE-EFDLTIKLVEEREELRTPLPPYTTETMLSDANRILKFSVKQTMQI 797
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 24.3 bits (51), Expect = 2.1
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 31 DLVLSDDEKLETNKPLCFIEER--LRKPFTKQSVKEDIKNFYRALKTSEKPCEEI 83
DLVL DE+ E + + +EER LR P + + + + R LK S K +I
Sbjct: 744 DLVLEHDEE-EFDLTIKLVEEREELRTPLPPYTTETMLSDANRILKFSVKQTMQI 797
>pdb|1G10|A Chain A, Toluene-4-Monooxygenase Catalytic Effector Protein Nmr
Structure
pdb|1G11|A Chain A, Toluene-4-Monooxygenase Catalytic Effector Protein Nmr
Structure
Length = 102
Score = 23.5 bits (49), Expect = 3.7
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 33 VLSDDEKLETNKPLCFIEERLRKPFTKQSVKEDIKNFYRALKTSEKPCEEIQF 85
+ ++ E + T K L EE+L +PF Q ++ ++ +F ++ E ++I+F
Sbjct: 50 IAAEGELILTRKTL---EEQLGRPFNMQELEINLASFAGQIQADE---DQIRF 96
>pdb|1BY1|A Chain A, Dbl Homology Domain From Beta-Pix
Length = 209
Score = 23.5 bits (49), Expect = 3.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 63 KEDIKNFYRALKTSEKPCEEIQFSKEQKIKQLLE 96
++DI+ A K C+E++ KE +++ L E
Sbjct: 173 RQDIQKSMAAFKNLSAQCQEVRKRKELELQILTE 206
>pdb|1FQ1|A Chain A, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|1FPZ|C Chain C, Crystal Structure Analysis Of Kinase Associated
Phosphatase (Kap) With A Substitution Of The Catalytic
Site Cysteine (Cys140) To A Serine
pdb|1FPZ|D Chain D, Crystal Structure Analysis Of Kinase Associated
Phosphatase (Kap) With A Substitution Of The Catalytic
Site Cysteine (Cys140) To A Serine
pdb|1FPZ|F Chain F, Crystal Structure Analysis Of Kinase Associated
Phosphatase (Kap) With A Substitution Of The Catalytic
Site Cysteine (Cys140) To A Serine
pdb|1FPZ|A Chain A, Crystal Structure Analysis Of Kinase Associated
Phosphatase (Kap) With A Substitution Of The Catalytic
Site Cysteine (Cys140) To A Serine
pdb|1FPZ|B Chain B, Crystal Structure Analysis Of Kinase Associated
Phosphatase (Kap) With A Substitution Of The Catalytic
Site Cysteine (Cys140) To A Serine
pdb|1FPZ|E Chain E, Crystal Structure Analysis Of Kinase Associated
Phosphatase (Kap) With A Substitution Of The Catalytic
Site Cysteine (Cys140) To A Serine
Length = 212
Score = 23.5 bits (49), Expect = 3.7
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Query: 8 KSLLIQRSLEFYLSDCLSPMEVCDLV--LSDDEKLETNKPLCFIEE 51
+S L+ L YLSD +SP + D + L ++T K ++ E
Sbjct: 146 RSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAIQTIKQYNYLHE 191
>pdb|1FQK|D Chain D, Crystal Structure Of The Heterodimeric Complex Of The
Rgs Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(RGS9) (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|E Chain E, Crystal Structure Of The Heterotrimeric Complex Of The
Rgs Domain Of Rgs9, The Gamma Subunit Of
Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT
[(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|B Chain B, Crystal Structure Of The Heterodimeric Complex Of The
Rgs Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(RGS9) (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|B Chain B, Crystal Structure Of The Heterotrimeric Complex Of The
Rgs Domain Of Rgs9, The Gamma Subunit Of
Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT
[(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 147
Score = 23.1 bits (48), Expect = 4.8
Identities = 11/48 (22%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
Query: 51 ERLRKPFTKQSVKEDIKNFYRALKTSE-KPCEEIQFSKEQKIKQLLEE 97
E +R P +QS + ++ + + CE++++ + K+K+ EE
Sbjct: 27 ELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLKYGDQSKVKEKAEE 74
>pdb|1FQI|A Chain A, Rgs9 Rgs Domain
Length = 147
Score = 23.1 bits (48), Expect = 4.8
Identities = 11/48 (22%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
Query: 51 ERLRKPFTKQSVKEDIKNFYRALKTSE-KPCEEIQFSKEQKIKQLLEE 97
E +R P +QS + ++ + + CE++++ + K+K+ EE
Sbjct: 27 ELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLKYGDQSKVKEKAEE 74
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 22.7 bits (47), Expect = 6.3
Identities = 10/38 (26%), Positives = 19/38 (49%)
Query: 45 PLCFIEERLRKPFTKQSVKEDIKNFYRALKTSEKPCEE 82
P+ + E ++ P T Q E + +F +AL C++
Sbjct: 164 PVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD 201
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 22.7 bits (47), Expect = 6.3
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 54 RKPFTKQSVKEDIKNFYRALKTSEKPCEEIQFSKEQKIKQL 94
RK F + + D K YR L S P + SK+ K L
Sbjct: 708 RKGFPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEKLL 748
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 22.7 bits (47), Expect = 6.3
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 54 RKPFTKQSVKEDIKNFYRALKTSEKPCEEIQFSKEQKIKQL 94
RK F + + D K YR L S P + SK+ K L
Sbjct: 705 RKGFPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEKLL 745
>pdb|1HDJ| Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 22.7 bits (47), Expect = 6.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 64 EDIKNFYRALKTSEKPCEEIQFSKEQKIKQLLEEY 98
E+IK YR P + + E+K K++ E Y
Sbjct: 18 EEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAY 52
>pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
Length = 310
Score = 22.7 bits (47), Expect = 6.3
Identities = 10/38 (26%), Positives = 19/38 (49%)
Query: 45 PLCFIEERLRKPFTKQSVKEDIKNFYRALKTSEKPCEE 82
P+ + E ++ P T Q E + +F +AL C++
Sbjct: 164 PVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD 201
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 22.7 bits (47), Expect = 6.3
Identities = 10/38 (26%), Positives = 19/38 (49%)
Query: 45 PLCFIEERLRKPFTKQSVKEDIKNFYRALKTSEKPCEE 82
P+ + E ++ P T Q E + +F +AL C++
Sbjct: 164 PVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD 201
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 22.3 bits (46), Expect = 8.2
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 45 PLCFIEERLRKPFTKQSVKEDIKNFYRALKTSEKPCEE 82
PL + E ++ P T Q E + +F + L C++
Sbjct: 164 PLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKD 201
>pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
Length = 243
Score = 22.3 bits (46), Expect = 8.2
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 73 LKTSEKPCEEIQFSKEQKIKQLLEEYTHKL 102
++ E P EE F ++ I+ L+EE ++L
Sbjct: 51 IRDKETPKEEFVFYADRLIRLLIEEALNEL 80
>pdb|1IRJ|A Chain A, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|H Chain H, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|B Chain B, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|F Chain F, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|G Chain G, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|C Chain C, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|E Chain E, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|D Chain D, Crystal Structure Of The Mrp14 Complexed With Chaps
Length = 113
Score = 22.3 bits (46), Expect = 8.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 59 KQSVKEDIKNFYRALKTSEKPCEEI 83
K+ V++D++NF + +EK E I
Sbjct: 37 KELVRKDLQNFLKKENKNEKVIEHI 61
>pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPU|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
Length = 224
Score = 22.3 bits (46), Expect = 8.2
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 73 LKTSEKPCEEIQFSKEQKIKQLLEEYTHKL 102
++ E P EE F ++ I+ L+EE ++L
Sbjct: 32 IRDKETPKEEFVFYADRLIRLLIEEALNEL 61
>pdb|1KRQ|A Chain A, Crystal Structure Analysis Of Campylobacter Jejuni
Ferritin
Length = 167
Score = 22.3 bits (46), Expect = 8.2
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 60 QSVKEDIKNFYRALKTSEKPCEEIQFSKEQKIKQLLEE-YTHK 101
Q VK+ +NF L EK E QF + I L+E THK
Sbjct: 71 QEVKQPEQNFKSLLDVFEKTYEHEQFI-TKSINTLVEHMLTHK 112
>pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 22.3 bits (46), Expect = 8.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 73 LKTSEKPCEEIQFSKEQKIK 92
+KTSE+ E + +EQK+K
Sbjct: 7 VKTSEEQAEAKRLEREQKLK 26
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.136 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,631
Number of Sequences: 13198
Number of extensions: 18038
Number of successful extensions: 79
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 22
length of query: 108
length of database: 2,899,336
effective HSP length: 84
effective length of query: 24
effective length of database: 1,790,704
effective search space: 42976896
effective search space used: 42976896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)