BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645431|ref|NP_207605.1| hypothetical protein
[Helicobacter pylori 26695]
(336 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IJB|A Chain A, The Von Willebrand Factor Mutant (I546v... 27 3.3
pdb|1FNS|A Chain A, Crystal Structure Of The Von Willebrand... 27 3.3
pdb|1OAK|A Chain A, Crystal Structure Of The Von Willebrand... 27 4.3
pdb|1AUQ| A1 Domain Of Von Willebrand Factor 27 4.3
pdb|1IGL| Insulin-Like Growth Factor Ii (Igf-Ii, Igf-2) (... 26 5.6
pdb|1M10|A Chain A, Crystal Structure Of The Complex Of Gly... 26 5.6
>pdb|1IJB|A Chain A, The Von Willebrand Factor Mutant (I546v) A1 Domain
pdb|1IJK|A Chain A, The Von Willebrand Factor Mutant (I546v) A1 Domain-
Botrocetin Complex
Length = 202
Score = 26.9 bits (58), Expect = 3.3
Identities = 32/150 (21%), Positives = 63/150 (41%), Gaps = 23/150 (15%)
Query: 192 LEAFIKDLLEKLNEASSWVFLS-FDYGDETERKDMHLRAFKNHQALDFKD-----ILNNL 245
L+AF+ D++E+L + WV ++ +Y D +H + KD L +
Sbjct: 34 LKAFVVDMMERLRVSQKWVRVAVVEYHD------------GSHAYIGLKDRKRPSELRRI 81
Query: 246 ASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKTQANALLDMGLMGLLETFSKSVGYERY 305
AS + + ++++ + ++ + ALL LM E S + RY
Sbjct: 82 ASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALL---LMASQEPQRMSRNFVRY 138
Query: 306 LKEAAKIKPLISPGGLG--ERFKALEFVKK 333
++ K K ++ P G+G K + ++K
Sbjct: 139 VQGLKKKKVIVIPVGIGPHANLKQIRLIEK 168
>pdb|1FNS|A Chain A, Crystal Structure Of The Von Willebrand Factor (Vwf) A1
Domain I546v Mutant In Complex With The Function
Blocking Fab Nmc4
Length = 196
Score = 26.9 bits (58), Expect = 3.3
Identities = 32/150 (21%), Positives = 63/150 (41%), Gaps = 23/150 (15%)
Query: 192 LEAFIKDLLEKLNEASSWVFLS-FDYGDETERKDMHLRAFKNHQALDFKD-----ILNNL 245
L+AF+ D++E+L + WV ++ +Y D +H + KD L +
Sbjct: 27 LKAFVVDMMERLRVSQKWVRVAVVEYHD------------GSHAYIGLKDRKRPSELRRI 74
Query: 246 ASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKTQANALLDMGLMGLLETFSKSVGYERY 305
AS + + ++++ + ++ + ALL LM E S + RY
Sbjct: 75 ASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALL---LMASQEPQRMSRNFVRY 131
Query: 306 LKEAAKIKPLISPGGLG--ERFKALEFVKK 333
++ K K ++ P G+G K + ++K
Sbjct: 132 VQGLKKKKVIVIPVGIGPHANLKQIRLIEK 161
>pdb|1OAK|A Chain A, Crystal Structure Of The Von Willebrand Factor (Vwf) A1
Domain In Complex With The Function Blocking Nmc-4 Fab
Length = 196
Score = 26.6 bits (57), Expect = 4.3
Identities = 32/150 (21%), Positives = 63/150 (41%), Gaps = 23/150 (15%)
Query: 192 LEAFIKDLLEKLNEASSWVFLS-FDYGDETERKDMHLRAFKNHQALDFKD-----ILNNL 245
L+AF+ D++E+L + WV ++ +Y D +H + KD L +
Sbjct: 27 LKAFVVDMMERLRISQKWVRVAVVEYHD------------GSHAYIGLKDRKRPSELRRI 74
Query: 246 ASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKTQANALLDMGLMGLLETFSKSVGYERY 305
AS + + ++++ + ++ + ALL LM E S + RY
Sbjct: 75 ASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALL---LMASQEPQRMSRNFVRY 131
Query: 306 LKEAAKIKPLISPGGLG--ERFKALEFVKK 333
++ K K ++ P G+G K + ++K
Sbjct: 132 VQGLKKKKVIVIPVGIGPHANLKQIRLIEK 161
>pdb|1AUQ| A1 Domain Of Von Willebrand Factor
Length = 208
Score = 26.6 bits (57), Expect = 4.3
Identities = 32/150 (21%), Positives = 63/150 (41%), Gaps = 23/150 (15%)
Query: 192 LEAFIKDLLEKLNEASSWVFLS-FDYGDETERKDMHLRAFKNHQALDFKD-----ILNNL 245
L+AF+ D++E+L + WV ++ +Y D +H + KD L +
Sbjct: 36 LKAFVVDMMERLRISQKWVRVAVVEYHD------------GSHAYIGLKDRKRPSELRRI 83
Query: 246 ASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKTQANALLDMGLMGLLETFSKSVGYERY 305
AS + + ++++ + ++ + ALL LM E S + RY
Sbjct: 84 ASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALL---LMASQEPQRMSRNFVRY 140
Query: 306 LKEAAKIKPLISPGGLG--ERFKALEFVKK 333
++ K K ++ P G+G K + ++K
Sbjct: 141 VQGLKKKKVIVIPVGIGPHANLKQIRLIEK 170
>pdb|1IGL| Insulin-Like Growth Factor Ii (Igf-Ii, Igf-2) (Nmr, 20
Structures)
Length = 67
Score = 26.2 bits (56), Expect = 5.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 71 GHFLSDIASFLNALSVGVMEQCAFVSCE 98
G + S AS ++ S G++E+C F SC+
Sbjct: 25 GFYFSRPASRVSRRSRGIVEECCFRSCD 52
>pdb|1M10|A Chain A, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 208
Score = 26.2 bits (56), Expect = 5.6
Identities = 32/150 (21%), Positives = 63/150 (41%), Gaps = 23/150 (15%)
Query: 192 LEAFIKDLLEKLNEASSWVFLS-FDYGDETERKDMHLRAFKNHQALDFKD-----ILNNL 245
L+AF+ D++E+L + WV ++ +Y D +H + KD L +
Sbjct: 36 LKAFVVDMMEQLRISQKWVRVAVVEYHD------------GSHAYIGLKDRKRPSELRRI 83
Query: 246 ASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKTQANALLDMGLMGLLETFSKSVGYERY 305
AS + + ++++ + ++ + ALL LM E S + RY
Sbjct: 84 ASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALL---LMASQEPQRMSRNFVRY 140
Query: 306 LKEAAKIKPLISPGGLG--ERFKALEFVKK 333
++ K K ++ P G+G K + ++K
Sbjct: 141 VQGLKKKKVIVIPVGIGPHANLKQIRLIEK 170
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.140 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,896,208
Number of Sequences: 13198
Number of extensions: 73627
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 6
length of query: 336
length of database: 2,899,336
effective HSP length: 89
effective length of query: 247
effective length of database: 1,724,714
effective search space: 426004358
effective search space used: 426004358
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)