BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645432|ref|NP_207606.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(205 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QH5|A Chain A, Human Glyoxalase Ii With S-(N-Hydroxy-N... 47 1e-06
pdb|1DBZ|B Chain B, C153s Mutant Of Pea Fructose-1,6-Bispho... 30 0.26
pdb|1DCU|A Chain A, Redox Signaling In The Chloroplast: Str... 30 0.26
pdb|1TML| Crystal Structure Of The Catalytic Domain Of A ... 28 0.98
pdb|1GEH|A Chain A, Crystal Structure Of Archaeal Rubisco (... 27 2.2
pdb|1SPI|A Chain A, Fructose-1,6-Bisphosphatase (D-Fructose... 25 6.4
pdb|1SML|A Chain A, Metallo Beta Lactamase L1 From Stenotro... 25 8.3
>pdb|1QH5|A Chain A, Human Glyoxalase Ii With S-(N-Hydroxy-N-
Bromophenylcarbamoyl)glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With S-(N-Hydroxy-N-
Bromophenylcarbamoyl)glutathione
pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
Length = 260
Score = 47.4 bits (111), Expect = 1e-06
Identities = 38/144 (26%), Positives = 58/144 (39%), Gaps = 27/144 (18%)
Query: 48 ILITHGHYDHVWDGAQLSKLLKNTPIYAPKDDVFMLENDIFHLGMPVFSPNFSVPCNKGC 107
+L TH H+DH +L KL +Y D + L + I HL
Sbjct: 50 VLTTHHHWDHAGGNEKLVKLESGLKVYGGDDRIGALTHKITHL----------------- 92
Query: 108 TTLEIANTTIKYWHFPGHTPG--CSIIEIEG-----VIFSGDFIFYRSIGRYDFPYSNEK 160
+TL++ + +K P HT G C + G +F+GD +F G+ F
Sbjct: 93 STLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGK--FYEGTAD 150
Query: 161 DMKESLLRFQNLDFPKDIEIYPGH 184
+M ++LL P D +Y GH
Sbjct: 151 EMCKALLEVLG-RLPPDTRVYCGH 173
>pdb|1DBZ|B Chain B, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|C Chain C, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|A Chain A, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|D Chain D, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
Length = 357
Score = 29.6 bits (65), Expect = 0.26
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 127 PGCSIIEIEGVIFSGDFIFYRSIGRYDFPYSNEKDMKESLLRFQNLDFPKDIEIY 181
PG +++ ++S IF +IG+ F ++ + E +L +NL PK +IY
Sbjct: 180 PGSNLLAAGYCMYSSSVIFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGKIY 234
>pdb|1DCU|A Chain A, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1D9Q|B Chain B, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1DCU|C Chain C, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1D9Q|C Chain C, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|A Chain A, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1DCU|D Chain D, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|B Chain B, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1D9Q|D Chain D, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
Length = 357
Score = 29.6 bits (65), Expect = 0.26
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 127 PGCSIIEIEGVIFSGDFIFYRSIGRYDFPYSNEKDMKESLLRFQNLDFPKDIEIY 181
PG +++ ++S IF +IG+ F ++ + E +L +NL PK +IY
Sbjct: 180 PGSNLLAAGYCMYSSSVIFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGKIY 234
>pdb|1TML| Crystal Structure Of The Catalytic Domain Of A Thermophilic
Endocellulase
Length = 286
Score = 27.7 bits (60), Expect = 0.98
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 26 FIIDPGFSSSEWVLENAKNPKAILI 50
F ++P SS+EWV N +P+ +I
Sbjct: 5 FYVNPNMSSAEWVRNNPNDPRTPVI 29
>pdb|1GEH|A Chain A, Crystal Structure Of Archaeal Rubisco (Ribulose 1,5-
Bisphosphate CarboxylaseOXYGENASE)
pdb|1GEH|B Chain B, Crystal Structure Of Archaeal Rubisco (Ribulose 1,5-
Bisphosphate CarboxylaseOXYGENASE)
pdb|1GEH|C Chain C, Crystal Structure Of Archaeal Rubisco (Ribulose 1,5-
Bisphosphate CarboxylaseOXYGENASE)
pdb|1GEH|D Chain D, Crystal Structure Of Archaeal Rubisco (Ribulose 1,5-
Bisphosphate CarboxylaseOXYGENASE)
pdb|1GEH|E Chain E, Crystal Structure Of Archaeal Rubisco (Ribulose 1,5-
Bisphosphate CarboxylaseOXYGENASE)
Length = 444
Score = 26.6 bits (57), Expect = 2.2
Identities = 15/48 (31%), Positives = 24/48 (49%), Gaps = 7/48 (14%)
Query: 59 WDGAQLSKLLKNTPIYAPKDDVFMLENDIFHLGMPVFSPNFSVPCNKG 106
WD Q +++L+ + Y P END+FHL +S + P + G
Sbjct: 328 WDVIQNARILRESH-YKPD------ENDVFHLEQKFYSIKAAFPTSSG 368
>pdb|1SPI|A Chain A, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1-Phosphohydrolase) (E.C.3.1.3.11)
pdb|1SPI|D Chain D, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1-Phosphohydrolase) (E.C.3.1.3.11)
pdb|1SPI|B Chain B, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1-Phosphohydrolase) (E.C.3.1.3.11)
pdb|1SPI|C Chain C, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1-Phosphohydrolase) (E.C.3.1.3.11)
Length = 358
Score = 25.0 bits (53), Expect = 6.4
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 127 PGCSIIEIEGVIFSGDFIFYRSIGRYDFPYSNEKDMKESLLRFQNLDFPKDIEIY 181
PG +++ ++S IF +IG+ + ++ + E +L + + PK +IY
Sbjct: 181 PGDNLLAAGYCMYSSSVIFVLTIGKGVYAFTLDPMYGEFVLTSEKIQIPKAGKIY 235
>pdb|1SML|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia
Length = 269
Score = 24.6 bits (52), Expect = 8.3
Identities = 31/138 (22%), Positives = 53/138 (37%), Gaps = 22/138 (15%)
Query: 7 ECGAVEENAYIVKLSSGIDFIIDPGFSS-SEWVLENAK-------NPKAILITHGHYDHV 58
+ G + A +V+ G ++D G + +L+N K + + IL++H H DH
Sbjct: 32 QIGTEDLTALLVQTPDGA-VLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHA 90
Query: 59 WDGAQLSKLLKNTPIYAPKDDVFMLE---NDIFHLGMPVFSPNFSVPCNKGCTTLE---- 111
A+L K + A + +L +D H G + P P N ++
Sbjct: 91 GPVAEL-KRRTGAKVAANAESAVLLARGGSDDLHFGDGITYP----PANADRIVMDGEVI 145
Query: 112 -IANTTIKYWHFPGHTPG 128
+ GHTPG
Sbjct: 146 TVGGIVFTAHFMAGHTPG 163
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.141 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,348,668
Number of Sequences: 13198
Number of extensions: 58322
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 7
length of query: 205
length of database: 2,899,336
effective HSP length: 84
effective length of query: 121
effective length of database: 1,790,704
effective search space: 216675184
effective search space used: 216675184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)