BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645433|ref|NP_207607.1| thiamin biosynthesis
protein (thiF) [Helicobacter pylori 26695]
(255 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylat... 135 4e-33
pdb|1EBF|A Chain A, Homoserine Dehydrogenase From S. Cerevi... 28 1.3
pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense >gi|... 27 2.3
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Prote... 27 3.0
pdb|1O75|A Chain A, Tp47, The 47-Kilodalton Lipoprotein Of ... 27 3.0
pdb|7ADH| Isonicotinimidylated Liver Alcohol Dehydrogenas... 27 3.0
pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mu... 26 3.9
pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Compl... 26 3.9
pdb|1HET|A Chain A, Atomic X-Ray Structure Of Liver Alcohol... 26 3.9
pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee... 26 3.9
pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol... 26 3.9
pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val29... 26 3.9
pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol... 26 3.9
pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1... 26 5.1
pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol ... 25 6.7
pdb|1M6H|A Chain A, Human Glutathione-Dependent Formaldehyd... 25 6.7
pdb|1DEH|A Chain A, Crystallization Of Human Beta1 Alcohol ... 25 6.7
pdb|1HDY|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Be... 25 6.7
pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Compl... 25 6.7
pdb|1A71|A Chain A, Ternary Complex Of An Active Site Doubl... 25 6.7
pdb|1D1S|A Chain A, Wild-Type Human Sigma (Class Iv) Alcoho... 25 6.7
pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mu... 25 6.7
pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydroge... 25 6.7
pdb|1HDZ|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Be... 25 6.7
pdb|4PGM|B Chain B, Saccharomyces Cerevisiae Phosphoglycera... 25 8.7
pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna... 25 8.7
pdb|3PGM| Phosphoglycerate Mutase (E.C.2.7.5.3) De-Phosph... 25 8.7
pdb|1QHF|A Chain A, Yeast Phosphoglycerate Mutase-3pg Compl... 25 8.7
pdb|1F8V|D Chain D, The Structure Of Pariacoto Virus Reveal... 25 8.7
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The Moeb-
Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
Length = 249
Score = 135 bits (341), Expect = 4e-33
Identities = 81/246 (32%), Positives = 124/246 (49%), Gaps = 5/246 (2%)
Query: 2 LSRLEKERYLRHIMLEDVGEEGQLKLLKSSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDF 61
LS E RY R I+L +GQ L S VL++G GGLG A YL +AG+G + ++DF
Sbjct: 4 LSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF 63
Query: 62 DVVDMSNLQRQIIHSQDFLNQSKASSAKARLKQLNAGIEIEAFEERFKAHNALSLIEPYD 121
D V +SNLQRQ +HS + Q K SA+ L ++N I I +LI +D
Sbjct: 64 DTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHD 123
Query: 122 FIIDATDNFNAKFLINDACVLAQKPYSHAGVLEYRGQSMSVLPH---SACLACVFDKPPK 178
++D TDN + +N C A+ P + GQ ++V + C C+ +
Sbjct: 124 LVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQ-ITVFTYQDGEPCYRCLSRLFGE 182
Query: 179 KGLNPI-SGLFGVLPGVLGCIQASECLKYFLGFETLLINTLLIADIKTMDFKKIQAPKNP 237
L + +G+ L GV+G +QA E +K G+ +++ D T F++++ +NP
Sbjct: 183 NALTCVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLMRNP 242
Query: 238 ECRVCG 243
C VCG
Sbjct: 243 GCEVCG 248
>pdb|1EBF|A Chain A, Homoserine Dehydrogenase From S. Cerevisiae Complex With
Nad+
pdb|1EBF|B Chain B, Homoserine Dehydrogenase From S. Cerevisiae Complex With
Nad+
pdb|1EBU|A Chain A, Homoserine Dehydrogenase Complex With Nad Analogue And
L- Homoserine
pdb|1EBU|B Chain B, Homoserine Dehydrogenase Complex With Nad Analogue And
L- Homoserine
pdb|1EBU|C Chain C, Homoserine Dehydrogenase Complex With Nad Analogue And
L- Homoserine
pdb|1EBU|D Chain D, Homoserine Dehydrogenase Complex With Nad Analogue And
L- Homoserine
Length = 358
Score = 27.7 bits (60), Expect = 1.3
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 31 SVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFDVVDMSNLQRQIIHSQDFLNQSKASSAKA 90
+V VIGAG +GSA L L A + +++V ++ +R +I S+DF + S KA
Sbjct: 6 NVAVIGAGVVGSAFLDQLLAMK----STITYNLVLLAEAERSLI-SKDFSPLNVGSDWKA 60
Query: 91 RL 92
L
Sbjct: 61 AL 62
>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense
pdb|1HT0|B Chain B, Human Gamma-2 Alcohol Dehydrogense
Length = 374
Score = 26.9 bits (58), Expect = 2.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG+G +V+M AAG +I VD +
Sbjct: 193 STCAVFGLGGVGLSVVMGCKAAGAARIIAVDIN 225
>pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 309
Score = 26.6 bits (57), Expect = 3.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 28 LKSSVLVIGAGGLGSAVLMYLCAAGIGKIGIVD 60
++ + +IGAG +GS +L A +G I ++D
Sbjct: 1 MRKKISIIGAGFVGSTTAHWLAAKELGDIVLLD 33
>pdb|1O75|A Chain A, Tp47, The 47-Kilodalton Lipoprotein Of Treponema Pallidum
pdb|1O75|B Chain B, Tp47, The 47-Kilodalton Lipoprotein Of Treponema Pallidum
Length = 415
Score = 26.6 bits (57), Expect = 3.0
Identities = 24/110 (21%), Positives = 48/110 (42%), Gaps = 7/110 (6%)
Query: 17 EDVGEEGQLKLLKSSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFDVVDMSNLQRQIIHS 76
+D+GE+G++K V GA L ++ + KI + V M + + H
Sbjct: 112 QDLGEDGEIKF----EAVEGAVALADRASSFMVDSEEYKI--TNVKVHGMKFVPVAVPHE 165
Query: 77 QDFLNQSKASSAK-ARLKQLNAGIEIEAFEERFKAHNALSLIEPYDFIID 125
+ + K + +R+ + G++ E+ F A S+ P+D ++D
Sbjct: 166 LKGIAKEKFHFVEDSRVTENTNGLKTMLTEDSFSARKVSSMESPHDLVVD 215
>pdb|7ADH| Isonicotinimidylated Liver Alcohol Dehydrogenase (E.C.1.1.1.1)
Length = 374
Score = 26.6 bits (57), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG+G +V+M AAG +I VD +
Sbjct: 193 STCAVFGLGGVGLSVIMGCXAAGAARIIGVDIN 225
>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of
Horse Liver Alcohol Dehydrogenase In Complex With Nad
And Inhibitor Trifluoroethanol
pdb|1AXE|B Chain B, Crystal Structure Of The Active-Site Mutant Phe93->trp Of
Horse Liver Alcohol Dehydrogenase In Complex With Nad
And Inhibitor Trifluoroethanol
Length = 374
Score = 26.2 bits (56), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG+G +V+M AAG +I VD +
Sbjct: 193 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN 225
>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double
Mutant Of Gly 293 Ala And Pro 295 Thr
pdb|1QLJ|A Chain A, Horse Liver Alcohol Dehydrogenase Apo Enzyme Double Mutant
Of Gly 293 Ala And Pro 295 Thr
Length = 374
Score = 26.2 bits (56), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG+G +V+M AAG +I VD +
Sbjct: 193 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN 225
>pdb|1HET|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing A Hydroxide Adduct To Nadh
pdb|1HET|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing A Hydroxide Adduct To Nadh
pdb|1HEU|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1HEU|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|3BTO|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s,3s)3-Butylthiolane 1-Oxide
pdb|3BTO|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s,3s)3-Butylthiolane 1-Oxide
pdb|3BTO|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s,3s)3-Butylthiolane 1-Oxide
pdb|3BTO|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s,3s)3-Butylthiolane 1-Oxide
pdb|2OHX|A Chain A, Alcohol Dehydrogenase (Holo Form) (E.C.1.1.1.1) Complex
With Nadh And Dmso
pdb|2OHX|B Chain B, Alcohol Dehydrogenase (Holo Form) (E.C.1.1.1.1) Complex
With Nadh And Dmso
pdb|1HF3|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1HF3|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1BTO|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s,3r)3-Butylthiolane 1-Oxide
pdb|1BTO|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s,3r)3-Butylthiolane 1-Oxide
pdb|1BTO|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s,3r)3-Butylthiolane 1-Oxide
pdb|1BTO|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s,3r)3-Butylthiolane 1-Oxide
pdb|1HLD|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad),
2,3,4,5,6-Penta-Fluorobenzyl Alcohol, P-Bromobenzyl
Alcohol And Zinc
pdb|1HLD|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad),
2,3,4,5,6-Penta-Fluorobenzyl Alcohol, P-Bromobenzyl
Alcohol And Zinc
pdb|2OXI|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Holo, Liver)
Complexed With Nadh And Dmso
pdb|2OXI|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Holo, Liver)
Complexed With Nadh And Dmso
pdb|1ADB|A Chain A, Alcohol Dehydrogenase (Adh) (E.C.1.1.1.1) Complexed With
5-Beta-D-Ribofuranosylnicotinamide Adenine Dinucleotide
(Cnad)
pdb|1ADB|B Chain B, Alcohol Dehydrogenase (Adh) (E.C.1.1.1.1) Complexed With
5-Beta-D-Ribofuranosylnicotinamide Adenine Dinucleotide
(Cnad)
pdb|8ADH| Apo-Liver Alcohol Dehydrogenase (E.C.1.1.99.8)
pdb|1LDE|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDY|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1ADC|A Chain A, Alcohol Dehydrogenase (Adh) (E.C.1.1.1.1) Complexed With
5-Beta-D-Ribofuranosylpicolinamide Adenine Dinucleotide
(Cpad)
pdb|1ADC|B Chain B, Alcohol Dehydrogenase (Adh) (E.C.1.1.1.1) Complexed With
5-Beta-D-Ribofuranosylpicolinamide Adenine Dinucleotide
(Cpad)
pdb|1ADG| Alcohol Dehydrogenase (E.C.1.1.1.1) Complexed With Inhibitor:
Beta-Methylene Selenazole-4-Carboxamide Adenine
Dinucleotide (Beta-Sad)
pdb|6ADH|A Chain A, Holo-Liver Alcohol Dehydrogenase (E.C.1.1.1.1) Complex
With Nad And Dmso
pdb|6ADH|B Chain B, Holo-Liver Alcohol Dehydrogenase (E.C.1.1.1.1) Complex
With Nad And Dmso
pdb|5ADH| Apo-Liver Alcohol Dehydrogenase (E.C.1.1.1.1) Complex With
Adp-Ribose
pdb|1ADF| Alcohol Dehydrogenase (E.C.1.1.1.1) Complexed With Inhibitor:
Beta-Methylene Thiazole-4-Carboxamide Adenine
Dinucleotide (Beta-Tad)
Length = 374
Score = 26.2 bits (56), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG+G +V+M AAG +I VD +
Sbjct: 193 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN 225
>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
pdb|1CDO|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
Length = 374
Score = 26.2 bits (56), Expect = 3.9
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFDVVDMSNLQRQIIHSQDFLNQSKASSAK 89
S+ V G G +G A +M +AG +I VD + + ++ + DF+N + S
Sbjct: 194 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFE--KAKVFGATDFVNPNDHSEPI 251
Query: 90 ARL--KQLNAGIE 100
+++ K N G++
Sbjct: 252 SQVLSKMTNGGVD 264
>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At
1.54 A Resolution
Length = 373
Score = 26.2 bits (56), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG+G +V+M AAG +I VD +
Sbjct: 192 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN 224
>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant
pdb|1JU9|B Chain B, Horse Liver Alcohol Dehydrogenase Val292ser Mutant
Length = 374
Score = 26.2 bits (56), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG+G +V+M AAG +I VD +
Sbjct: 193 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN 225
>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At
1.54 A Resolution
Length = 373
Score = 26.2 bits (56), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG+G +V+M AAG +I VD +
Sbjct: 192 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN 224
>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a)
pdb|1HSO|B Chain B, Human Alpha Alcohol Dehydrogenase (Adh1a)
Length = 374
Score = 25.8 bits (55), Expect = 5.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG+G + +M AAG +I VD +
Sbjct: 193 STCAVFGLGGVGLSAIMGCKAAGAARIIAVDIN 225
>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10
MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM Nad+
And 1 Mm 4-Iodopyrazole At 25 C
pdb|1HTB|B Chain B, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10
MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM Nad+
And 1 Mm 4-Iodopyrazole At 25 C
Length = 374
Score = 25.4 bits (54), Expect = 6.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG+G + +M AAG +I VD +
Sbjct: 193 STCAVFGLGGVGLSAVMGCKAAGAARIIAVDIN 225
>pdb|1M6H|A Chain A, Human Glutathione-Dependent Formaldehyde Dehydrogenase
pdb|1M6H|B Chain B, Human Glutathione-Dependent Formaldehyde Dehydrogenase
pdb|1M6W|A Chain A, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase And 12-Hydroxydodecanoic Acid
pdb|1M6W|B Chain B, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase And 12-Hydroxydodecanoic Acid
pdb|1MA0|A Chain A, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With Nad+ And Dodecanoic Acid
pdb|1MA0|B Chain B, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With Nad+ And Dodecanoic Acid
pdb|1MP0|A Chain A, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase With Nad(H)
pdb|1MP0|B Chain B, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase With Nad(H)
pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A
Glutathione-Dependent Formaldehyde Dehydrogenase)
pdb|1TEH|B Chain B, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A
Glutathione-Dependent Formaldehyde Dehydrogenase)
Length = 373
Score = 25.4 bits (54), Expect = 6.7
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 34 VIGAGGLGSAVLMYLCAAGIGKIGIVDFDVVDMSNLQR----QIIHSQDF 79
V G GG+G AV+M AG +I VD + + + + I+ QDF
Sbjct: 196 VFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDF 245
>pdb|1DEH|A Chain A, Crystallization Of Human Beta1 Alcohol Dehydrogenase (15
MgML) IN 50 MM SODIUM PHOSPHATE (PH 7.5), 2.0 MM NAD+
And 1 Mm 4-Iodopyrazole At 25 Oc, 13% (WV) PEG 8000
pdb|1DEH|B Chain B, Crystallization Of Human Beta1 Alcohol Dehydrogenase (15
MgML) IN 50 MM SODIUM PHOSPHATE (PH 7.5), 2.0 MM NAD+
And 1 Mm 4-Iodopyrazole At 25 Oc, 13% (WV) PEG 8000
pdb|1HSZ|A Chain A, Human Beta-1 Alcohol Dehydrogenase (Adh1b1)
pdb|1HSZ|B Chain B, Human Beta-1 Alcohol Dehydrogenase (Adh1b1)
pdb|1HDX|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Beta-1 Isoenzyme,
Human) Complexed With Nad(H) And Cyclohexanol
pdb|1HDX|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Beta-1 Isoenzyme,
Human) Complexed With Nad(H) And Cyclohexanol
pdb|3HUD|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Beta-1 Isoenzyme)
pdb|3HUD|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Beta-1 Isoenzyme)
Length = 374
Score = 25.4 bits (54), Expect = 6.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG+G + +M AAG +I VD +
Sbjct: 193 STCAVFGLGGVGLSAVMGCKAAGAARIIAVDIN 225
>pdb|1HDY|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Beta-2 Isoenzyme,
Human) Complexed With Nad+ And 4-Iodopyrazole
pdb|1HDY|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Beta-2 Isoenzyme,
Human) Complexed With Nad+ And 4-Iodopyrazole
Length = 374
Score = 25.4 bits (54), Expect = 6.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG+G + +M AAG +I VD +
Sbjct: 193 STCAVFGLGGVGLSAVMGCKAAGAARIIAVDIN 225
>pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2-Deoxy-Glucitol-6-Phosphate
pdb|1JKI|B Chain B, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2-Deoxy-Glucitol-6-Phosphate
pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKF|B Chain B, Holo 1l-Myo-Inositol-1-Phosphate Synthase
Length = 533
Score = 25.4 bits (54), Expect = 6.7
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 29 KSSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFDVVDMSNLQRQIIHSQDFLNQSKASSA 88
K +++IG GG + L+ A + ++N +++ + Q +
Sbjct: 65 KLGIMLIGLGGNNGSTLV----ASV------------LANKHNVEFQTKEGVKQPNYFGS 108
Query: 89 KARLKQLNAGIEIEAFEERFKAHNALSLIEPYDFIIDATDNFNA 132
+ L GI+ E + ++ L ++ P DF++ D NA
Sbjct: 109 MTQCSTLKLGIDAEGNDVYAPFNSLLPMVSPNDFVVSGWDINNA 152
>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse
Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With
Nad And Trifluoroethanol
pdb|1A71|B Chain B, Ternary Complex Of An Active Site Double Mutant Of Horse
Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With
Nad And Trifluoroethanol
pdb|1A72| An Active-Site Double Mutant (Phe93->trp, Val203->ala) Of Horse
Liver Alcohol Dehydrogenase In Complex With The
Isosteric Nad Analog Cpad
Length = 374
Score = 25.4 bits (54), Expect = 6.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG G +V+M AAG +I VD +
Sbjct: 193 STCAVFGLGGAGLSVIMGCKAAGAARIIGVDIN 225
>pdb|1D1S|A Chain A, Wild-Type Human Sigma (Class Iv) Alcohol Dehydrogenase
pdb|1D1S|B Chain B, Wild-Type Human Sigma (Class Iv) Alcohol Dehydrogenase
pdb|1D1S|C Chain C, Wild-Type Human Sigma (Class Iv) Alcohol Dehydrogenase
pdb|1D1S|D Chain D, Wild-Type Human Sigma (Class Iv) Alcohol Dehydrogenase
pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|B Chain B, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|C Chain C, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|D Chain D, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
Length = 373
Score = 25.4 bits (54), Expect = 6.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ +V G GG+G +V+M +AG +I +D +
Sbjct: 192 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLN 224
>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|B Chain B, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|C Chain C, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|D Chain D, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
Length = 374
Score = 25.4 bits (54), Expect = 6.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG G +V+M AAG +I VD +
Sbjct: 193 STCAVFGLGGAGLSVIMGCKAAGAARIIGVDIN 225
>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|B Chain B, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|C Chain C, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|D Chain D, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
Length = 373
Score = 25.4 bits (54), Expect = 6.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ +V G GG+G +V+M +AG +I +D +
Sbjct: 192 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLN 224
>pdb|1HDZ|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Beta-1 Isoenzyme,
Human) Mutant With Arg 47 Replaced By Gly (R47g)
Complexed With Nad+
pdb|1HDZ|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Beta-1 Isoenzyme,
Human) Mutant With Arg 47 Replaced By Gly (R47g)
Complexed With Nad+
Length = 374
Score = 25.4 bits (54), Expect = 6.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 30 SSVLVIGAGGLGSAVLMYLCAAGIGKIGIVDFD 62
S+ V G GG+G + +M AAG +I VD +
Sbjct: 193 STCAVFGLGGVGLSAVMGCKAAGAARIIAVDIN 225
>pdb|4PGM|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|E Chain E, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|F Chain F, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|H Chain H, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|1BQ4|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ3|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|5PGM|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|G Chain G, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|1BQ4|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ3|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
Length = 246
Score = 25.0 bits (53), Expect = 8.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 143 AQKPYSHAGVLEYRGQSMSVLPHSACLACVFDK 175
A P+S G Y+ +VLP + LA V D+
Sbjct: 125 ASSPFSQKGDERYKYVDPNVLPETESLALVIDR 157
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 25.0 bits (53), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 226 MDFKKIQ-APKNPECRVCGTHKI 247
MDF I AP+ P+C CG K+
Sbjct: 190 MDFSAIICAPRKPKCEKCGMSKL 212
>pdb|3PGM| Phosphoglycerate Mutase (E.C.2.7.5.3) De-Phospho Enzyme
Length = 241
Score = 25.0 bits (53), Expect = 8.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 143 AQKPYSHAGVLEYRGQSMSVLPHSACLACVFDK 175
A P+S G Y+ +VLP + LA V D+
Sbjct: 125 ASSPFSQKGDERYKYVDPNVLPETESLALVIDR 157
>pdb|1QHF|A Chain A, Yeast Phosphoglycerate Mutase-3pg Complex Structure To 1.7
A
pdb|1QHF|B Chain B, Yeast Phosphoglycerate Mutase-3pg Complex Structure To 1.7
A
Length = 240
Score = 25.0 bits (53), Expect = 8.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 143 AQKPYSHAGVLEYRGQSMSVLPHSACLACVFDK 175
A P+S G Y+ +VLP + LA V D+
Sbjct: 125 ASSPFSQKGDERYKYVDPNVLPETESLALVIDR 157
>pdb|1F8V|D Chain D, The Structure Of Pariacoto Virus Reveals A Dodecahedral
Cage Of Duplex Rna
pdb|1F8V|E Chain E, The Structure Of Pariacoto Virus Reveals A Dodecahedral
Cage Of Duplex Rna
pdb|1F8V|F Chain F, The Structure Of Pariacoto Virus Reveals A Dodecahedral
Cage Of Duplex Rna
Length = 40
Score = 25.0 bits (53), Expect = 8.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 181 LNPISGLFGVLPGVLGCIQA 200
LN ISG V+PG +G I A
Sbjct: 11 LNQISGTLSVIPGPVGTISA 30
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.140 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,406,624
Number of Sequences: 13198
Number of extensions: 52710
Number of successful extensions: 182
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 29
length of query: 255
length of database: 2,899,336
effective HSP length: 86
effective length of query: 169
effective length of database: 1,764,308
effective search space: 298168052
effective search space used: 298168052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)