BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645434|ref|NP_207608.1| flagellar motor rotation
protein (motA) [Helicobacter pylori 26695]
(257 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1CGT| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19) 29 0.61
pdb|6CGT| Hoxa Complex Of Cyclodextrin Glycosyltransferas... 29 0.61
pdb|5CGT| Maltotriose Complex Of Preconditioned Cyclodext... 29 0.61
pdb|3CGT| Structure Of Cyclodextrin Glycosyltransferase C... 29 0.61
pdb|4CGT| Deletion Mutant Delta(145-150), F151d Of Cyclod... 29 0.61
pdb|1GK4|A Chain A, Human Vimentin Coil 2b Fragment (Cys2) ... 26 4.0
pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum... 26 5.2
>pdb|1CGT| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19)
Length = 684
Score = 28.9 bits (63), Expect = 0.61
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 141 GAAHYWE-TAGETAPTMGLVGAVMG 164
GA W+ T ET PT+G VG VMG
Sbjct: 484 GATAVWQYTTAETTPTIGHVGPVMG 508
>pdb|6CGT| Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 28.9 bits (63), Expect = 0.61
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 141 GAAHYWE-TAGETAPTMGLVGAVMG 164
GA W+ T ET PT+G VG VMG
Sbjct: 484 GATAVWQYTTAETTPTIGHVGPVMG 508
>pdb|5CGT| Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|1CGU| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19) Mutant With Asp
229 Replaced By Ala (D229a)
pdb|7CGT| Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 28.9 bits (63), Expect = 0.61
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 141 GAAHYWE-TAGETAPTMGLVGAVMG 164
GA W+ T ET PT+G VG VMG
Sbjct: 484 GATAVWQYTTAETTPTIGHVGPVMG 508
>pdb|3CGT| Structure Of Cyclodextrin Glycosyltransferase Complexed With Its
Main Product Beta-Cyclodextrin
pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
Length = 684
Score = 28.9 bits (63), Expect = 0.61
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 141 GAAHYWE-TAGETAPTMGLVGAVMG 164
GA W+ T ET PT+G VG VMG
Sbjct: 484 GATAVWQYTTAETTPTIGHVGPVMG 508
>pdb|4CGT| Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 28.9 bits (63), Expect = 0.61
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 141 GAAHYWE-TAGETAPTMGLVGAVMG 164
GA W+ T ET PT+G VG VMG
Sbjct: 478 GATAVWQYTTAETTPTIGHVGPVMG 502
>pdb|1GK4|A Chain A, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|B Chain B, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|D Chain D, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|F Chain F, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|C Chain C, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|E Chain E, Human Vimentin Coil 2b Fragment (Cys2)
Length = 84
Score = 26.2 bits (56), Expect = 4.0
Identities = 15/31 (48%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 121 LKSVKESLEISIEEMEEYYH-GAAHYWETAG 150
LK ESLE + EMEE + AA+Y +T G
Sbjct: 6 LKGTNESLERQMREMEENFAVEAANYQDTIG 36
>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
Length = 329
Score = 25.8 bits (55), Expect = 5.2
Identities = 14/52 (26%), Positives = 25/52 (47%), Gaps = 2/52 (3%)
Query: 115 IIDGKDLKSVKESLEISIEEMEEYYHGAAHYWETAGETAPTMGLVGAVMGLM 166
IID + + S + +I+ + ++ G A W T G P+ G G G++
Sbjct: 233 IIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMG--IPSDGSYGIPEGVI 282
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.136 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,417,471
Number of Sequences: 13198
Number of extensions: 55273
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 7
length of query: 257
length of database: 2,899,336
effective HSP length: 86
effective length of query: 171
effective length of database: 1,764,308
effective search space: 301696668
effective search space used: 301696668
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)