BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645436|ref|NP_207610.1| hypothetical protein
[Helicobacter pylori 26695]
         (148 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1D7M|A  Chain A, Coiled-Coil Dimerization Domain From Co...    24  8.2

>pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Cortexillin I
 pdb|1D7M|B Chain B, Coiled-Coil Dimerization Domain From Cortexillin I
          Length = 101

 Score = 23.9 bits (50), Expect = 8.2
 Identities = 18/73 (24%), Positives = 32/73 (43%)

Query: 18 LVAREKDASSNLFDLIDKGINREQELKEQEQKTRLKLAQSPLVALEIVPQETPYLEWQGA 77
          L+ ++   +S L  L  +G  RE+ L+E E K    L    L  L  +  E    + +  
Sbjct: 23 LIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKD 82

Query: 78 RESYYLKVSAVVE 90
          R    LK++  ++
Sbjct: 83 RAILELKLAEAID 95



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 733,147
Number of Sequences: 13198
Number of extensions: 25823
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 1
length of query: 148
length of database: 2,899,336
effective HSP length: 80
effective length of query: 68
effective length of database: 1,843,496
effective search space: 125357728
effective search space used: 125357728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)