BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644713|ref|NP_206883.1| ribosomal protein S9 (rps9)
[Helicobacter pylori 26695]
(129 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FJG|I Chain I, Structure Of The Thermus Thermophilus 3... 116 7e-28
pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX 25 2.8
pdb|1ATN|A Chain A, Deoxyribonuclease I Complex With Actin 24 4.8
pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Act... 24 4.8
pdb|1LCU|B Chain B, Polylysine Induces An Antiparallel Acti... 24 4.8
pdb|1IJJ|B Chain B, The X-Ray Crystal Structure Of The Comp... 24 4.8
pdb|1LOT|B Chain B, Crystal Structure Of The Complex Of Act... 24 4.8
pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-Bi... 24 4.8
pdb|1DB0|A Chain A, Carboxy-Terminal Half Of Gelsolin (G4-G... 24 4.8
pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase >gi|1865554... 24 6.2
pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Diki... 24 6.2
pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces A... 24 6.2
pdb|1DIK| Pyruvate Phosphate Dikinase 24 6.2
pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces G... 24 6.2
pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces H... 24 6.2
pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Diki... 24 6.2
pdb|1GK3|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant D1... 24 6.2
pdb|1GKM|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseu... 24 6.2
pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces 24 6.2
pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dik... 24 6.2
pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces H... 24 6.2
pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F3... 24 6.2
pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F3... 24 6.2
pdb|1GKJ|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant Y2... 24 6.2
pdb|1FAI|H Chain H, Fab Fragment From A Monoclonal Anti-Ars... 24 6.2
pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts B... 23 8.1
pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase... 23 8.1
pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl C... 23 8.1
>pdb|1FJG|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
pdb|1J5E|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1IBL|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1HR0|I Chain I, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNZ|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1IBM|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1IBK|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1HNW|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1I94|I Chain I, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I96|I Chain I, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|I Chain I, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1I95|I Chain I, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
pdb|1JGQ|L Chain L, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1GIX|L Chain L, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1JGO|L Chain L, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|L Chain L, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
Length = 128
Score = 116 bits (291), Expect = 7e-28
Identities = 61/129 (47%), Positives = 85/129 (65%), Gaps = 1/129 (0%)
Query: 1 MRKIYATGKRKTAIAKVWLTPGKGELSINEQSLNQWLGGHEAIKMKVMQPLLLTKQEQSV 60
M + Y TG+RK A+A+V+L PG G++++N Q N++ G + ++PL
Sbjct: 1 MEQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRA-VAALEPLRAVDALGRF 59
Query: 61 DIKAVVFGGGYSAQAEALRHGISKALNAYDIAFRAILKPKGLLTRDSRVVERKKYGKRKA 120
D V GGG S Q +A++ GI++AL Y+ +RA LKP G LTRD+RVVERKKYGK KA
Sbjct: 60 DAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKA 119
Query: 121 RRSPQFSKR 129
RR+PQ+SKR
Sbjct: 120 RRAPQYSKR 128
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
Length = 372
Score = 25.0 bits (53), Expect = 2.8
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 3/37 (8%)
Query: 5 YATGKRKTAIAKVWLTPGKGELSINEQSLNQWLGGHE 41
+A K +T IA + P E+ I E+S N+W+ HE
Sbjct: 14 HAWNKDRTQIA---ICPNNHEVHIYEKSGNKWVQVHE 47
>pdb|1ATN|A Chain A, Deoxyribonuclease I Complex With Actin
Length = 373
Score = 24.3 bits (51), Expect = 4.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 30 EQSLNQWLGGHEAIKMKVMQPLLLTKQE 57
E+ + W+GG + Q + +TKQE
Sbjct: 335 ERKYSVWIGGSILASLSTFQQMWITKQE 362
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin
Domain 1
pdb|1ESV|A Chain A, Complex Between Latrunculin A:rabbit Muscle Alpha
Actin:human Gelsolin Domain 1
Length = 377
Score = 24.3 bits (51), Expect = 4.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 30 EQSLNQWLGGHEAIKMKVMQPLLLTKQE 57
E+ + W+GG + Q + +TKQE
Sbjct: 336 ERKYSVWIGGSILASLSTFQQMWITKQE 363
>pdb|1LCU|B Chain B, Polylysine Induces An Antiparallel Actin Dimer That
Nucleates Filament Assembly: Crystal Structure At 3.5 A
Resolution
pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That
Nucleates Filament Assembly: Crystal Structure At 3.5 A
Resolution
Length = 371
Score = 24.3 bits (51), Expect = 4.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 30 EQSLNQWLGGHEAIKMKVMQPLLLTKQE 57
E+ + W+GG + Q + +TKQE
Sbjct: 330 ERKYSVWIGGSILASLSTFQQMWITKQE 357
>pdb|1IJJ|B Chain B, The X-Ray Crystal Structure Of The Complex Between Rabbit
Skeletal Muscle Actin And Latrunculin A At 2.85 A
Resolution
pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit
Skeletal Muscle Actin And Latrunculin A At 2.85 A
Resolution
Length = 377
Score = 24.3 bits (51), Expect = 4.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 30 EQSLNQWLGGHEAIKMKVMQPLLLTKQE 57
E+ + W+GG + Q + +TKQE
Sbjct: 336 ERKYSVWIGGSILASLSTFQQMWITKQE 363
>pdb|1LOT|B Chain B, Crystal Structure Of The Complex Of Actin With Vitamin D-
Binding Protein
pdb|1J6Z|A Chain A, Uncomplexed Actin
Length = 376
Score = 24.3 bits (51), Expect = 4.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 30 EQSLNQWLGGHEAIKMKVMQPLLLTKQE 57
E+ + W+GG + Q + +TKQE
Sbjct: 335 ERKYSVWIGGSILASLSTFQQMWITKQE 362
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-Binding Protein In
Complex With Skeletal Actin
pdb|1M8Q|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|0 Chain 0, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 375
Score = 24.3 bits (51), Expect = 4.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 30 EQSLNQWLGGHEAIKMKVMQPLLLTKQE 57
E+ + W+GG + Q + +TKQE
Sbjct: 334 ERKYSVWIGGSILASLSTFQQMWITKQE 361
>pdb|1DB0|A Chain A, Carboxy-Terminal Half Of Gelsolin (G4-G6) Bound To Actin
Length = 371
Score = 24.3 bits (51), Expect = 4.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 30 EQSLNQWLGGHEAIKMKVMQPLLLTKQE 57
E+ + W+GG + Q + +TKQE
Sbjct: 330 ERKYSVWIGGSILASLSTFQQMWITKQE 357
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 23.9 bits (50), Expect = 6.2
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 22 GKGELSINEQSLNQWLGGH 40
G GE+ INE++ LGGH
Sbjct: 469 GCGEIKINEEAKTFELGGH 487
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 23.9 bits (50), Expect = 6.2
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 22 GKGELSINEQSLNQWLGGH 40
G GE+ INE++ LGGH
Sbjct: 469 GCGEIKINEEAKTFELGGH 487
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
Length = 504
Score = 23.9 bits (50), Expect = 6.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 62 IKAVVFGGGYSAQAEALRHG 81
+ AVV G GY A ALR G
Sbjct: 6 VPAVVIGTGYGAAVSALRLG 25
>pdb|1DIK| Pyruvate Phosphate Dikinase
Length = 874
Score = 23.9 bits (50), Expect = 6.2
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 22 GKGELSINEQSLNQWLGGH 40
G GE+ INE++ LGGH
Sbjct: 470 GCGEIKINEEAKTFELGGH 488
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 23.9 bits (50), Expect = 6.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 62 IKAVVFGGGYSAQAEALRHG 81
+ AVV G GY A ALR G
Sbjct: 6 VPAVVIGTGYGAAVSALRLG 25
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 23.9 bits (50), Expect = 6.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 62 IKAVVFGGGYSAQAEALRHG 81
+ AVV G GY A ALR G
Sbjct: 6 VPAVVIGTGYGAAVSALRLG 25
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 23.9 bits (50), Expect = 6.2
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 22 GKGELSINEQSLNQWLGGH 40
G GE+ INE++ LGGH
Sbjct: 469 GCGEIKINEEAKTFELGGH 487
>pdb|1GK3|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant D145a From
Pseudomonas Putida
Length = 509
Score = 23.9 bits (50), Expect = 6.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 35 QWLGGHEAIKMKVMQPLLLTKQEQSVDIKAVVFGGGYSAQAEALRHGISKALNAYDIA 92
QWL EA+ + ++PL L +E + G ++ A ALR G+ A + Y A
Sbjct: 167 QWLSATEALAVAGLEPLTLAAKE-----GLALLNGTQASTAYALR-GLFYAEDLYAAA 218
>pdb|1GKM|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Inhibited With L-Cysteine
pdb|1B8F|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Length = 509
Score = 23.9 bits (50), Expect = 6.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 35 QWLGGHEAIKMKVMQPLLLTKQEQSVDIKAVVFGGGYSAQAEALRHGISKALNAYDIA 92
QWL EA+ + ++PL L +E + G ++ A ALR G+ A + Y A
Sbjct: 167 QWLSATEALAVAGLEPLTLAAKE-----GLALLNGTQASTAYALR-GLFYAEDLYAAA 218
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
Length = 504
Score = 23.9 bits (50), Expect = 6.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 62 IKAVVFGGGYSAQAEALRHG 81
+ AVV G GY A ALR G
Sbjct: 6 VPAVVIGTGYGAAVSALRLG 25
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 23.9 bits (50), Expect = 6.2
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 22 GKGELSINEQSLNQWLGGH 40
G GE+ INE++ LGGH
Sbjct: 469 GCGEIKINEEAKTFELGGH 487
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 23.9 bits (50), Expect = 6.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 62 IKAVVFGGGYSAQAEALRHG 81
+ AVV G GY A ALR G
Sbjct: 6 VPAVVIGTGYGAAVSALRLG 25
>pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|B Chain B, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|C Chain C, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|D Chain D, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
Length = 509
Score = 23.9 bits (50), Expect = 6.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 35 QWLGGHEAIKMKVMQPLLLTKQEQSVDIKAVVFGGGYSAQAEALRHGISKALNAYDIA 92
QWL EA+ + ++PL L +E + G ++ A ALR G+ A + Y A
Sbjct: 167 QWLSATEALAVAGLEPLTLAAKE-----GLALLNGTQASTAYALR-GLFYAEDLYAAA 218
>pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329a From
Pseudomonas Putida
Length = 509
Score = 23.9 bits (50), Expect = 6.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 35 QWLGGHEAIKMKVMQPLLLTKQEQSVDIKAVVFGGGYSAQAEALRHGISKALNAYDIA 92
QWL EA+ + ++PL L +E + G ++ A ALR G+ A + Y A
Sbjct: 167 QWLSATEALAVAGLEPLTLAAKE-----GLALLNGTQASTAYALR-GLFYAEDLYAAA 218
>pdb|1GKJ|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant Y280f From
Pseudomonas Putida
Length = 509
Score = 23.9 bits (50), Expect = 6.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 35 QWLGGHEAIKMKVMQPLLLTKQEQSVDIKAVVFGGGYSAQAEALRHGISKALNAYDIA 92
QWL EA+ + ++PL L +E + G ++ A ALR G+ A + Y A
Sbjct: 167 QWLSATEALAVAGLEPLTLAAKE-----GLALLNGTQASTAYALR-GLFYAEDLYAAA 218
>pdb|1FAI|H Chain H, Fab Fragment From A Monoclonal Anti-Arsonate Antibody,
R19.9 (Igg2b,Kappa)
pdb|2F19|H Chain H, Fab Fragment From A Monoclonal Anti-Arsonate Antibody,
R19.9 (Igg2b,Kappa)
Length = 221
Score = 23.9 bits (50), Expect = 6.2
Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 1/54 (1%)
Query: 18 WLTPGKGELSINEQSLNQ-WLGGHEAIKMKVMQPLLLTKQEQSVDIKAVVFGGG 70
++ PGKG LS NE+ + L + MQ LT ++ +V A F GG
Sbjct: 50 YINPGKGYLSYNEKFKGKTTLTVDRSSSTAYMQLRSLTSEDAAVYFCARSFYGG 103
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
Length = 800
Score = 23.5 bits (49), Expect = 8.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 72 SAQAEALRHGISKALNAYDIAFRAILKPKGLLTRDSRVV 110
SA +ALR + D+ RAI+ +L RD V+
Sbjct: 387 SAPVQALREKXGEFAELRDLLERAIIDTPPVLVRDGGVI 425
>pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
Maltose
pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
Length = 637
Score = 23.5 bits (49), Expect = 8.1
Identities = 25/88 (28%), Positives = 37/88 (41%), Gaps = 15/88 (17%)
Query: 6 ATGKRKTAIAKVWLTPG--------KGELSINEQSL----NQWLGGHEAIKMKVMQPLLL 53
ATGKR A+ K+W+ PG G ++ L W+ +++ + QPL
Sbjct: 14 ATGKRIYAVPKLWI-PGFFKKFDEKSGRCFVDPYELGAEITDWI-LNQSREWDYSQPLSF 71
Query: 54 TKQEQSVD-IKAVVFGGGYSAQAEALRH 80
K E++ D IK V G A H
Sbjct: 72 LKGEKTPDWIKRSVVYGSLPRTTAAYNH 99
>pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl Carrier Protein
Reductase From Brassica Napus Complexed With Nadp+
Length = 244
Score = 23.5 bits (49), Expect = 8.1
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 53 LTKQEQSVDIKAVVFGGGYSAQA--EALRHGISKALNAYDIAFRAILKPKGLLTRDSRVV 110
++KQ ++ +A+ FGG S +A EA+ A D+ ++ G +TRD+ ++
Sbjct: 42 VSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDV----VVNNAG-ITRDTLLI 96
Query: 111 ERKK 114
KK
Sbjct: 97 RMKK 100
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.133 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 689,143
Number of Sequences: 13198
Number of extensions: 22945
Number of successful extensions: 79
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 28
length of query: 129
length of database: 2,899,336
effective HSP length: 78
effective length of query: 51
effective length of database: 1,869,892
effective search space: 95364492
effective search space used: 95364492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)