BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645438|ref|NP_207612.1| osmoprotection protein
(proV) [Helicobacter pylori 26695]
(216 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G29|1 Chain 1, Malk >gi|12084695|pdb|1G29|2 Chain 2, Malk 116 2e-27
pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacteria... 112 3e-26
pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding... 108 4e-25
pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Pe... 102 4e-23
pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atp... 80 2e-16
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 77 2e-15
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 64 1e-11
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 64 2e-11
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 61 9e-11
pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B... 44 2e-05
pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritim... 35 0.009
pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Ra... 28 0.82
pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase >... 28 0.82
pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumiga... 25 5.3
pdb|1LZ7|A Chain A, Glycosyltransferase B >gi|23200405|pdb|... 25 6.9
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved... 25 6.9
pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed Wi... 25 6.9
pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp... 25 6.9
pdb|1LZ0|A Chain A, Glycosyltransferase A >gi|23200404|pdb|... 25 6.9
pdb|1PFO| Perfringolysin O 25 9.0
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 116 bits (290), Expect = 2e-27
Identities = 64/191 (33%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 21 KDFNLSIQEGDFLCVLGESGSGKSTLLGLILGLLKPSLGSVKIFNETLSN---NAFLRQK 77
++ +L +++G+F+ +LG SG GK+T L +I GL +PS G + I ++ +++ F+ K
Sbjct: 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79
Query: 78 ---IGYIAQGNSLFSHLNAMQNMTFCLNLQGINKQAAQKEAKALALKMGLDESLMDKFPN 134
I + Q +L+ H+ N+ F L L+ + +Q + + +A +GL E L+++ P
Sbjct: 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-LLNRKPR 138
Query: 135 ELSGGQAQRVGIIRGIIHRPELILLDEPFSALDSFNRKNLQDLIKEIHQNSHATFIMVTH 194
ELSGGQ QRV + R I+ +P++ L+DEP S LD+ R ++ +K++ + T I VTH
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 195 DESEAQKLATK 205
D+ EA + +
Sbjct: 199 DQVEAMTMGDR 209
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 112 bits (280), Expect = 3e-26
Identities = 69/189 (36%), Positives = 109/189 (57%), Gaps = 9/189 (4%)
Query: 21 KDFNLSIQEGDFLCVLGESGSGKSTLLGLILGLLKPSLGSVKIFNETLSN------NAFL 74
K+ NL+I+EG+F+ ++G SGSGKST+L +I L KP+ G V I N ++
Sbjct: 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81
Query: 75 RQKIGYIAQGNSLFSHLNAMQNMTFCLNLQGINKQAAQKEAKAL--ALKMG-LDESLMDK 131
R KIG++ Q +L L A++N+ L + + ++ K LKM L+E +
Sbjct: 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH 141
Query: 132 FPNELSGGQAQRVGIIRGIIHRPELILLDEPFSALDSFNRKNLQDLIKEIHQNSHATFIM 191
PN+LSGGQ QRV I R + + P +IL D+P ALDS + + L+K++++ T ++
Sbjct: 142 KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV 201
Query: 192 VTHDESEAQ 200
VTHD + A+
Sbjct: 202 VTHDINVAR 210
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 108 bits (271), Expect = 4e-25
Identities = 68/189 (35%), Positives = 105/189 (54%), Gaps = 9/189 (4%)
Query: 21 KDFNLSIQEGDFLCVLGESGSGKSTLLGLILGLLKPSLGSVKIFNETLSN------NAFL 74
K+ NL+I+EG+F+ + G SGSGKST L +I L KP+ G V I N ++
Sbjct: 22 KNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81
Query: 75 RQKIGYIAQGNSLFSHLNAMQNMTFCLNLQ---GINKQAAQKEAKALALKMGLDESLMDK 131
R KIG++ Q +L L A++N+ L + + + +K A L+E +
Sbjct: 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFANH 141
Query: 132 FPNELSGGQAQRVGIIRGIIHRPELILLDEPFSALDSFNRKNLQDLIKEIHQNSHATFIM 191
PN+LSGGQ QRV I R + + P +IL DEP ALDS + + L+K++++ T ++
Sbjct: 142 KPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVV 201
Query: 192 VTHDESEAQ 200
VTHD + A+
Sbjct: 202 VTHDINVAR 210
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 102 bits (253), Expect = 4e-23
Identities = 65/219 (29%), Positives = 114/219 (51%), Gaps = 17/219 (7%)
Query: 14 YHNRAVFKDFNLSIQEGDFLCVLGESGSGKSTLLGLILGLLKPSLGSVKIFNETLS---- 69
Y V K +L + GD + ++G SGSGKST L I L KPS G++ + + ++
Sbjct: 16 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRD 75
Query: 70 -----------NNAFLRQKIGYIAQGNSLFSHLNAMQN-MTFCLNLQGINKQAAQKEAKA 117
LR ++ + Q +L+SH+ ++N M + + G++K A++ A
Sbjct: 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALK 135
Query: 118 LALKMGLDESLMDKFPNELSGGQAQRVGIIRGIIHRPELILLDEPFSALDSFNRKNLQDL 177
K+G+DE K+P LSGGQ QRV I R + P+++L DEP SALD + +
Sbjct: 136 YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 195
Query: 178 IKEIHQNSHATFIMVTHDESEAQKLATKTLEIKALKQEQ 216
++++ + T ++VTH+ A+ +++ + + K E+
Sbjct: 196 MQQLAEEG-KTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 80.1 bits (196), Expect = 2e-16
Identities = 51/208 (24%), Positives = 110/208 (52%), Gaps = 21/208 (10%)
Query: 1 MKEIVTIENVSFNYHNRA---VFKDFNLSIQEGDFLCVLGESGSGKSTLLGLILGLLKPS 57
++ +V ++VSF Y NR V + +++ G+ ++G +GSGKST+ L+ L +P+
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 58 LGSVKIFNETLSN--NAFLRQKIGYIAQGNSLFSHLNAMQNMTFCLNLQGINKQAAQKEA 115
G + + + L + +L +++ + Q +F + +N+ + G+ ++ +E
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAY-----GLTQKPTMEEI 124
Query: 116 KALALKMGLDESL----------MDKFPNELSGGQAQRVGIIRGIIHRPELILLDEPFSA 165
A A+K G + +D+ ++LSGGQ Q V + R +I +P +++LD+ SA
Sbjct: 125 TAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSA 184
Query: 166 LDSFNRKNLQDLIKEIHQNSHATFIMVT 193
LD+ ++ ++ L+ E + + +++T
Sbjct: 185 LDANSQLQVEQLLYESPERYSRSVLLIT 212
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 76.6 bits (187), Expect = 2e-15
Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 14/207 (6%)
Query: 5 VTIENVSFNYHNRAV--FKDFNLSIQEGDFLCVLGESGSGKSTLLGLILGLLKPSLGSVK 62
V NV+F Y R V ++ NL I G + ++G SGSGKST+ LI G +
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEIL 401
Query: 63 IFNETLSNN--AFLRQKIGYIAQGNSLFSHLNAMQNMTFCLNLQGINKQAAQKEAKALAL 120
+ L A LR ++ ++Q LF+ A N+ + Q +Q + A A+
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVA-NNIAYARTEQYSREQIEEAARMAYAM 460
Query: 121 KM------GLDESLMDKFPNELSGGQAQRVGIIRGIIHRPELILLDEPFSALDSFNRKNL 174
GLD +++ + LSGGQ QR+ I R ++ +++LDE SALD+ + + +
Sbjct: 461 DFINKMDNGLD-TVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 175 QDLIKEIHQNSHATFIMVTHDESEAQK 201
Q + E+ +N T +++ H S +K
Sbjct: 520 QAALDELQKN--RTSLVIAHRLSTIEK 544
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 64.3 bits (155), Expect = 1e-11
Identities = 45/204 (22%), Positives = 97/204 (47%), Gaps = 7/204 (3%)
Query: 4 IVTIENVSFNYHNRAVFKDFNLSIQEGDFLCVLGESGSGKSTLLGLILGLLKPSLGSVKI 63
++ ++++ Y K +L + G + ++G +G+GK+T L I GL++ G +
Sbjct: 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 64 FNETLSN---NAFLRQKIGYIAQGNSLFSHLNAMQNMTF-CLNLQGINKQAAQKEAKALA 119
+ ++N + R I + +G +F L +N+ N + +K+ +++ + +
Sbjct: 66 NGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRK--DKEGIKRDLEWIF 123
Query: 120 LKMGLDESLMDKFPNELSGGQAQRVGIIRGIIHRPELILLDEPFSALDSFNRKNLQDLIK 179
+ + + LSGG+ Q + I R + RP+L+ DEP L + ++I+
Sbjct: 124 SLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQ 183
Query: 180 EIHQNSHATFIMVTHDESEAQKLA 203
+I+Q T ++V + A K+A
Sbjct: 184 KINQEG-TTILLVEQNALGALKVA 206
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 63.5 bits (153), Expect = 2e-11
Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 16/207 (7%)
Query: 3 EIVTIENVSFNYHNRAVFKDFNLSIQEGDFLCVLGESGSGKSTLLGLILGLLKPSLGSVK 62
EI+ EN+ + ++S+ +GD ++G +GSGKSTL+ +I G LK G V
Sbjct: 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 65
Query: 63 IFNETLSNN---AFLRQKIGYIAQGNSLFSHLNAMQNM---TFCLNLQGIN----KQAAQ 112
N+ ++N I Q + ++N+ C +N K+
Sbjct: 66 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 125
Query: 113 KEAKALALKMGLDE-----SLMDKFPNELSGGQAQRVGIIRGIIHRPELILLDEPFSALD 167
KE + + + E L D+ ELSGGQ + V I R ++ P++I++DEP + +
Sbjct: 126 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 185
Query: 168 SFNRKNLQDLIKEIHQNSHATFIMVTH 194
++ + + E+ TF+++ H
Sbjct: 186 PGLAHDIFNHVLELKAKG-ITFLIIEH 211
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 61.2 bits (147), Expect = 9e-11
Identities = 49/207 (23%), Positives = 90/207 (42%), Gaps = 16/207 (7%)
Query: 3 EIVTIENVSFNYHNRAVFKDFNLSIQEGDFLCVLGESGSGKSTLLGLILGLLKPSLGSVK 62
EI+ EN+ + ++S+ +GD ++G +GSGKSTL+ +I G LK G V
Sbjct: 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 65
Query: 63 IFNETLSNN---AFLRQKIGYIAQGNSLFSHLNAMQNMTF------------CLNLQGIN 107
N+ ++N I Q + ++N+ + I
Sbjct: 66 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIP 125
Query: 108 KQAAQKEAKALALKMGLDESLMDKFPNELSGGQAQRVGIIRGIIHRPELILLDEPFSALD 167
K+ E L+ L D+ ELSGGQ + V I R ++ P++I++D+P + +
Sbjct: 126 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVA 185
Query: 168 SFNRKNLQDLIKEIHQNSHATFIMVTH 194
++ + + E+ TF+++ H
Sbjct: 186 PGLAHDIFNHVLELKAKG-ITFLIIEH 211
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 43.5 bits (101), Expect = 2e-05
Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 25/200 (12%)
Query: 27 IQEGDFLCVLGESGSGKSTLLGLILGLLKPSLGSVKIFNETLSNNAFLRQKIGYIAQGNS 86
++ G+ L ++G +G+GKSTLL G GS++ + L A+ K+
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARXAGXTS-GKGSIQFAGQPL--EAWSATKLALHR---- 75
Query: 87 LFSHLNAMQNMTFC------LNLQGINKQAAQKEAKALALKMGLDESLMDKFPNELSGGQ 140
++L+ Q F L L +K + +A + LD+ L + N+LSGG+
Sbjct: 76 --AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-LNDVAGALALDDKL-GRSTNQLSGGE 131
Query: 141 AQRVGIIRGIIH-------RPELILLDEPFSALDSFNRKNLQDLIKEIHQNSHATFIMVT 193
QRV + ++ +L+LLDEP ++LD + L ++ + Q A + +
Sbjct: 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLA-IVXSS 190
Query: 194 HDESEAQKLATKTLEIKALK 213
HD + + A + +K K
Sbjct: 191 HDLNHTLRHAHRAWLLKGGK 210
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 34.7 bits (78), Expect = 0.009
Identities = 22/65 (33%), Positives = 34/65 (51%), Gaps = 6/65 (9%)
Query: 136 LSGGQAQRVGIIRGI----IHRPELILLDEPFSALDSFNRKNLQDLIKEIHQNSHATFIM 191
LSGG+ VG+ I +LDE S LD +N + + L+KE + H FI+
Sbjct: 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKE--NSKHTQFIV 277
Query: 192 VTHDE 196
+TH++
Sbjct: 278 ITHNK 282
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 28.1 bits (61), Expect = 0.82
Identities = 23/55 (41%), Positives = 33/55 (59%), Gaps = 9/55 (16%)
Query: 3 EIVTIENVSFNYHNRAVFKDFNLSIQEGDFLCVLGESGSGKSTLLGLIL-GLLKP 56
E VT++N F H+ V + +EG L ++G++GSGKS+LL IL GL P
Sbjct: 4 ERVTVKN--FRSHSDTV-----VEFKEGINL-IIGQNGSGKSSLLDAILVGLYWP 50
>pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2T|A Chain A, Crystal Structure Of Atp-Free Rad50 Abc-Atpase
Length = 149
Score = 28.1 bits (61), Expect = 0.82
Identities = 23/55 (41%), Positives = 33/55 (59%), Gaps = 9/55 (16%)
Query: 3 EIVTIENVSFNYHNRAVFKDFNLSIQEGDFLCVLGESGSGKSTLLGLIL-GLLKP 56
E VT++N F H+ V + +EG L ++G++GSGKS+LL IL GL P
Sbjct: 4 ERVTVKN--FRSHSDTV-----VEFKEGINL-IIGQNGSGKSSLLDAILVGLYWP 50
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
Length = 221
Score = 25.4 bits (54), Expect = 5.3
Identities = 15/58 (25%), Positives = 27/58 (45%), Gaps = 3/58 (5%)
Query: 159 LDEPFSALDSFNRKNLQDLIKEIHQNSHATFIMVTHDESEAQKLATKTLEIKALKQEQ 216
L P+ AL + + + +L H+ H T++ + EAQK A + ++ L Q
Sbjct: 21 LPYPYDALQPYISQQIMELH---HKKHHQTYVNGLNAALEAQKKAAEATDVPKLVSVQ 75
>pdb|1LZ7|A Chain A, Glycosyltransferase B
pdb|1LZJ|A Chain A, Glycosyltransferase B + Udp + H Antigen Acceptor
Length = 292
Score = 25.0 bits (53), Expect = 6.9
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 27 IQEGDF-LCVLGESGSGKSTLLGLILGLLKPSLGSVKIFNETLSNNAFLRQKIGY 80
+ EG F + +L E ++T +GL + +K + +K+F ET + + ++ Y
Sbjct: 33 VWEGTFNIDILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHY 87
>pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
Length = 301
Score = 25.0 bits (53), Expect = 6.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 32 FLCVLGESGSGKSTLLGLILG 52
F+ ++G GKSTLL +LG
Sbjct: 10 FIAIVGRPNVGKSTLLNKLLG 30
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 25.0 bits (53), Expect = 6.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 17 RAVFKDFNLSIQEGDFLCVLGESGSGKSTLLGLIL 51
R + D+ L Q GDF GE + LGL+L
Sbjct: 24 RDQYPDYLLLFQVGDFYECFGEDAERLARALGLVL 58
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 25.0 bits (53), Expect = 6.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 17 RAVFKDFNLSIQEGDFLCVLGESGSGKSTLLGLIL 51
R + D+ L Q GDF GE + LGL+L
Sbjct: 24 RDQYPDYLLLFQVGDFYECFGEDAERLARALGLVL 58
>pdb|1LZ0|A Chain A, Glycosyltransferase A
pdb|1LZI|A Chain A, Glycosyltransferase A + Udp + H Antigen Acceptor
Length = 292
Score = 25.0 bits (53), Expect = 6.9
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 27 IQEGDF-LCVLGESGSGKSTLLGLILGLLKPSLGSVKIFNETLSNNAFLRQKIGY 80
+ EG F + +L E ++T +GL + +K + +K+F ET + + ++ Y
Sbjct: 33 VWEGTFNIDILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHY 87
>pdb|1PFO| Perfringolysin O
Length = 500
Score = 24.6 bits (52), Expect = 9.0
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 172 KNLQDLIKEIHQNSHATFIMVTHDESEAQKLATKTLE 208
KN Q K+I++NS T +++ D E K+ TK +
Sbjct: 304 KNSQQY-KDIYENSSFTAVVLGGDAQEHNKVVTKDFD 339
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.135 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,111,359
Number of Sequences: 13198
Number of extensions: 42744
Number of successful extensions: 226
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 23
length of query: 216
length of database: 2,899,336
effective HSP length: 84
effective length of query: 132
effective length of database: 1,790,704
effective search space: 236372928
effective search space used: 236372928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)