BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645442|ref|NP_207616.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(114 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HH1|A Chain A, The Structure Of Hjc, A Holliday Juncti... 29 0.15
pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial... 28 0.25
pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protea... 28 0.33
pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Redu... 27 0.56
pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Redu... 27 0.56
pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From... 26 1.2
pdb|1CK4|B Chain B, Crystal Structure Of Rat A1b1 Integrin ... 25 2.1
pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial... 25 2.8
pdb|1GCX|A Chain A, Crystal Structure Of Family B Dna Polym... 24 3.6
pdb|1IE9|A Chain A, Crystal Structure Of The Nuclear Recept... 23 6.1
pdb|1LFG| Lactoferrin (Diferric) 23 8.0
pdb|1LFH| Lactoferrin (Apo Form) 23 8.0
pdb|1B0L|A Chain A, Recombinant Human Diferric Lactoferrin 23 8.0
pdb|1LFI| Lactoferrin (Copper Form) 23 8.0
pdb|1LCF| Lactoferrin (Copper And Oxalate Form) 23 8.0
pdb|1QC5|B Chain B, I Domain From Integrin Alpha1-Beta1 23 8.0
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna S... 23 8.0
pdb|1VFE| Human Lactoferrin, N-Terminal Lobe Mutant With ... 23 8.0
pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution O... 23 8.0
pdb|1L5T|A Chain A, Crystal Structure Of A Domain-Opened Mu... 23 8.0
pdb|1LCT| Lactoferrin (N-Terminal Half-Molecule) 23 8.0
pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Pol... 23 8.0
pdb|1DSN| D60s N-Terminal Lobe Human Lactoferrin 23 8.0
pdb|1VFD| Human Lactoferrin, N-Terminal Lobe Mutant With ... 23 8.0
pdb|1QC5|A Chain A, I Domain From Integrin Alpha1-Beta1 23 8.0
pdb|1EH3|A Chain A, R210k N-Terminal Lobe Human Lactoferrin 23 8.0
pdb|1HSE| H253m N Terminal Lobe Of Human Lactoferrin 23 8.0
pdb|1FCK|A Chain A, Structure Of Diceric Human Lactoferrin 23 8.0
pdb|1CB6|A Chain A, Structure Of Human Apolactoferrin At 2.... 23 8.0
>pdb|1HH1|A Chain A, The Structure Of Hjc, A Holliday Junction Resolving
Enzyme From Sulfolobus Solfataricus
Length = 143
Score = 28.9 bits (63), Expect = 0.15
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 6 NKHREKGLKAEEEACGFLKSLGFEMVERNFFSQFGEI---DIIALKKGVLHFIEVKSGEN 62
N + KG E L+ GF +V + DIIALK GV+ IE+KS ++
Sbjct: 2 NAKKRKGSAVERNIVSRLRDKGFAVVRAPASGSKRKDPIPDIIALKNGVIILIEMKSRKD 61
Query: 63 FD 64
+
Sbjct: 62 IE 63
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok
Length = 773
Score = 28.1 bits (61), Expect = 0.25
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 38 QFGEIDIIALKKGVLHFIEVKSGENFDPIYAITPSKLKKMIKTIRCYLSQKDPNSDFCID 97
+FGE I+ + V + +N D Y + S K+MIK + +KDP D
Sbjct: 151 EFGEGPILMISYADEEGARVITWKNIDLPYVESVSTEKEMIKRFLKVIQEKDP------D 204
Query: 98 ALIVKNG 104
LI NG
Sbjct: 205 VLITYNG 211
>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
Length = 1045
Score = 27.7 bits (60), Expect = 0.33
Identities = 12/17 (70%), Positives = 13/17 (75%)
Query: 84 YLSQKDPNSDFCIDALI 100
YLS KDP D+ IDALI
Sbjct: 1014 YLSGKDPQIDYAIDALI 1030
>pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
pdb|1YBV|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
Length = 283
Score = 26.9 bits (58), Expect = 0.56
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 39 FGEIDIIALKKGVLHFIEVK--SGENFDPIYAI 69
FG++DI+ GV+ F VK + E FD ++ I
Sbjct: 105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTI 137
>pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|D Chain D, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0N|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-Nitro-Inden-1-One
pdb|1G0O|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1DOH|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-Nitro-Inden-1-One
pdb|1G0N|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
Length = 283
Score = 26.9 bits (58), Expect = 0.56
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 39 FGEIDIIALKKGVLHFIEVK--SGENFDPIYAI 69
FG++DI+ GV+ F VK + E FD ++ I
Sbjct: 105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTI 137
>pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus
Gorgonarius
Length = 773
Score = 25.8 bits (55), Expect = 1.2
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
Query: 10 EKGL---KAEEEACGFLKSLGFEMVERNFFS--QFGEIDIIALKKGVLHFIEVKSGENFD 64
+KGL + +EE LK L F+ +E + +F E I+ + V + +N D
Sbjct: 123 DKGLIPMEGDEE----LKMLAFD-IETLYHEGEEFAEGPILMISYADEEGARVITWKNID 177
Query: 65 PIYAITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNG 104
Y S K+MIK + +KDP D LI NG
Sbjct: 178 LPYVDVVSTEKEMIKRFLKVVKEKDP------DVLITYNG 211
>pdb|1CK4|B Chain B, Crystal Structure Of Rat A1b1 Integrin I-Domain.
pdb|1CK4|A Chain A, Crystal Structure Of Rat A1b1 Integrin I-Domain
Length = 198
Score = 25.0 bits (53), Expect = 2.1
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 8 HREKGLKAEEEACGFLKSLGFEMVERNFFSQFGEIDIIALKKGV 51
H +G + E+ +KS+ E E++FF+ E+ ++ + K +
Sbjct: 146 HYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKAL 189
>pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok. Deposition Of Second Native Structure At 2.4
Angstro
Length = 733
Score = 24.6 bits (52), Expect = 2.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 61 ENFDPIYAITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNG 104
+N D Y + S K+MIK + +KDP D LI NG
Sbjct: 174 KNIDLPYVESVSTEKEMIKRFLKVIQEKDP------DVLITYNG 211
>pdb|1GCX|A Chain A, Crystal Structure Of Family B Dna Polymerase From
Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1
Length = 774
Score = 24.3 bits (51), Expect = 3.6
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
Query: 10 EKGL---KAEEEACGFLKSLGFEMVERNFFS--QFGEIDIIALKKGVLHFIEVKSGENFD 64
+KGL + +EE LK L F+ +E + +F E I+ + V + +N D
Sbjct: 123 DKGLVPMEGDEE----LKMLAFD-IETLYHEGEEFAEGPILMISYADEEGARVITWKNVD 177
Query: 65 PIYAITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNG 104
Y S ++MIK + +KDP D LI NG
Sbjct: 178 LPYVDVVSTEREMIKRFLRVVKEKDP------DVLITYNG 211
>pdb|1IE9|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Ligand Binding Domain Bound To Mc1288
pdb|1IE8|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Ligand Binding Domain Bound To Kh1060
pdb|1DB1|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Complexed To Vitamin D
Length = 259
Score = 23.5 bits (49), Expect = 6.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 24 KSLGFEMVERNFFSQFGEIDIIALKKGVLHFIEVKSGENF 63
K +GF + F E I+ LK + I ++S E+F
Sbjct: 72 KVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESF 111
>pdb|1LFG| Lactoferrin (Diferric)
Length = 691
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 ITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLE 110
+ P KL+ + + Y +++ P + + A++ K G F+L E
Sbjct: 69 LAPYKLRPVAAEV--YGTERQPRTHYYAVAVVKKGGSFQLNE 108
>pdb|1LFH| Lactoferrin (Apo Form)
Length = 691
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 ITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLE 110
+ P KL+ + + Y +++ P + + A++ K G F+L E
Sbjct: 69 LAPYKLRPVAAEV--YGTERQPRTHYYAVAVVKKGGSFQLNE 108
>pdb|1B0L|A Chain A, Recombinant Human Diferric Lactoferrin
Length = 691
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 ITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLE 110
+ P KL+ + + Y +++ P + + A++ K G F+L E
Sbjct: 69 LAPYKLRPVAAEV--YGTERQPRTHYYAVAVVKKGGSFQLNE 108
>pdb|1LFI| Lactoferrin (Copper Form)
Length = 691
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 ITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLE 110
+ P KL+ + + Y +++ P + + A++ K G F+L E
Sbjct: 69 LAPYKLRPVAAEV--YGTERQPRTHYYAVAVVKKGGSFQLNE 108
>pdb|1LCF| Lactoferrin (Copper And Oxalate Form)
Length = 691
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 ITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLE 110
+ P KL+ + + Y +++ P + + A++ K G F+L E
Sbjct: 69 LAPYKLRPVAAEV--YGTERQPRTHYYAVAVVKKGGSFQLNE 108
>pdb|1QC5|B Chain B, I Domain From Integrin Alpha1-Beta1
Length = 192
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 11 KGLKAEEEACGFLKSLGFEMVERNFFSQFGEIDIIALKK 49
+G + E+ +KS+ E E++FF+ EI ++ + K
Sbjct: 148 RGNLSTEKFVEEIKSIASEPTEKHFFNVSDEIALVTIVK 186
>pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna Synthetase Complexed
With The Trna(Arg) And L-Arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
Length = 607
Score = 23.1 bits (48), Expect = 8.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 23 LKSLGFEMVERNFFSQFGEIDIIALKKGVLHFIE 56
LK +GFE + FG + ++ +KG + F++
Sbjct: 386 LKQMGFEWAKDLQHVNFGMVQGMSTRKGTVVFLD 419
>pdb|1VFE| Human Lactoferrin, N-Terminal Lobe Mutant With Arg 121 Replaced By
Ser (R121s)
Length = 333
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 ITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLE 110
+ P KL+ + + Y +++ P + + A++ K G F+L E
Sbjct: 69 LAPYKLRPVAAEV--YGTERQPRTHYYAVAVVKKGGSFQLNE 108
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 23.1 bits (48), Expect = 8.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 53 HFIEVKSGENFDPIYAITPSKLKKMI 78
HF G + P YA+T S+ K+ +
Sbjct: 631 HFFTENPGLDIQPSYAMTTSEAKRAV 656
>pdb|1L5T|A Chain A, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The
Human Lactoferrin N-Lobe Refined From A Merohedrally-
Twinned Crystal Form.
pdb|1L5T|B Chain B, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The
Human Lactoferrin N-Lobe Refined From A Merohedrally-
Twinned Crystal Form
Length = 332
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 ITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLE 110
+ P KL+ + + Y +++ P + + A++ K G F+L E
Sbjct: 69 LAPYKLRPVAAEV--YGTERQPRTHYYAVAVVKKGGSFQLNE 108
>pdb|1LCT| Lactoferrin (N-Terminal Half-Molecule)
Length = 333
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 ITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLE 110
+ P KL+ + + Y +++ P + + A++ K G F+L E
Sbjct: 69 LAPYKLRPVAAEV--YGTERQPRTHYYAVAVVKKGGSFQLNE 108
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 23.1 bits (48), Expect = 8.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 53 HFIEVKSGENFDPIYAITPSKLKKMI 78
HF G + P YA+T S+ K+ +
Sbjct: 630 HFFTENPGLDIQPSYAMTTSEAKRAV 655
>pdb|1DSN| D60s N-Terminal Lobe Human Lactoferrin
Length = 333
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 ITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLE 110
+ P KL+ + + Y +++ P + + A++ K G F+L E
Sbjct: 69 LAPYKLRPVAAEV--YGTERQPRTHYYAVAVVKKGGSFQLNE 108
>pdb|1VFD| Human Lactoferrin, N-Terminal Lobe Mutant With Arg 121 Replaced By
Glu (R121e)
Length = 330
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 ITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLE 110
+ P KL+ + + Y +++ P + + A++ K G F+L E
Sbjct: 69 LAPYKLRPVAAEV--YGTERQPRTHYYAVAVVKKGGSFQLNE 108
>pdb|1QC5|A Chain A, I Domain From Integrin Alpha1-Beta1
Length = 192
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 11 KGLKAEEEACGFLKSLGFEMVERNFFSQFGEIDIIALKK 49
+G + E+ +KS+ E E++FF+ EI ++ + K
Sbjct: 148 RGNLSTEKFVEEIKSIASEPTEKHFFNVSDEIALVTIVK 186
>pdb|1EH3|A Chain A, R210k N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 ITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLE 110
+ P KL+ + + Y +++ P + + A++ K G F+L E
Sbjct: 70 LAPYKLRPVAAEV--YGTERQPRTHYYAVAVVKKGGSFQLNE 109
>pdb|1HSE| H253m N Terminal Lobe Of Human Lactoferrin
Length = 333
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 ITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLE 110
+ P KL+ + + Y +++ P + + A++ K G F+L E
Sbjct: 69 LAPYKLRPVAAEV--YGTERQPRTHYYAVAVVKKGGSFQLNE 108
>pdb|1FCK|A Chain A, Structure Of Diceric Human Lactoferrin
Length = 692
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 ITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLE 110
+ P KL+ + + Y +++ P + + A++ K G F+L E
Sbjct: 70 LAPYKLRPVAAEV--YGTERQPRTHYYAVAVVKKGGSFQLNE 109
>pdb|1CB6|A Chain A, Structure Of Human Apolactoferrin At 2.0 A Resolution.
pdb|1BKA| Oxalate-Substituted Diferric Lactoferrin
Length = 691
Score = 23.1 bits (48), Expect = 8.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 ITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLE 110
+ P KL+ + + Y +++ P + + A++ K G F+L E
Sbjct: 69 LAPYKLRPVAAEV--YGTERQPRTHYYAVAVVKKGGSFQLNE 108
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.142 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 649,284
Number of Sequences: 13198
Number of extensions: 24112
Number of successful extensions: 67
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 29
length of query: 114
length of database: 2,899,336
effective HSP length: 76
effective length of query: 38
effective length of database: 1,896,288
effective search space: 72058944
effective search space used: 72058944
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)