BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645444|ref|NP_207618.1| thioredoxin reductase
(trxB) [Helicobacter pylori 26695]
(311 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1TDE| Thioredoxin Reductase (E.C.1.6.4.5) (Wild Type) 196 4e-51
pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxi... 196 4e-51
pdb|1TRB| Thioredoxin Reductase (E.C.1.6.4.5) Mutant With... 192 5e-50
pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between ... 192 5e-50
pdb|1TDF| Thioredoxin Reductase (E.C.1.6.4.5) Mutant With... 192 5e-50
pdb|1VDC| Structure Of Nadph Dependent Thioredoxin Reductase 179 3e-46
pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhy... 147 2e-36
pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf 145 6e-36
pdb|1GER|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Com... 52 7e-08
pdb|1GSN| Human Glutathione Reductase Modified By Dinitro... 52 7e-08
pdb|1DNC| Human Glutathione Reductase Modified By Digluta... 52 7e-08
pdb|1GRT| Human Glutathione Reductase A34eR37W MUTANT 51 1e-07
pdb|5GRT| Human Glutathione Reductase A34e, R37w Mutant, ... 51 1e-07
pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated... 51 1e-07
pdb|3GRS| Glutathione Reductase (E.C.1.6.4.2), Oxidized F... 51 1e-07
pdb|1XAN| Human Glutathione Reductase In Complex With A X... 51 1e-07
pdb|1GES|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad... 49 7e-07
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase >gi|158... 49 1e-06
pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexe... 44 2e-05
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamid... 42 1e-04
pdb|1TYP|A Chain A, Trypanothione Reductase (E.C.1.6.4.8) C... 40 3e-04
pdb|1TYT|A Chain A, Trypanothione Reductase (E.C.1.6.4.8) (... 37 0.002
pdb|1TYT|B Chain B, Trypanothione Reductase (E.C.1.6.4.8) (... 37 0.002
pdb|2TPR|A Chain A, Trypanothione Reductase (E.C.1.6.4.8) >... 36 0.006
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypan... 36 0.006
pdb|1OJT| Structure Of Dihydrolipoamide Dehydrogenase 34 0.019
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) F... 34 0.019
pdb|1BHY| Low Temperature Middle Resolution Structure Of ... 34 0.019
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) F... 34 0.019
pdb|1LPF|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8... 33 0.032
pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glyci... 32 0.071
pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Comp... 32 0.093
pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Fo... 32 0.093
pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant F... 30 0.35
pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavo... 30 0.35
pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant F... 30 0.35
pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant F... 30 0.35
pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frig... 30 0.35
pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant F... 30 0.35
pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant F... 30 0.35
pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frig... 30 0.35
pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT ... 30 0.35
pdb|1NDA|A Chain A, Trypanothione Oxidoreductase (E.C.1.6.4... 29 0.60
pdb|1PHH| p-Hydroxybenzoate Hydroxylase (PHBH) (E.C.1.14.... 28 1.0
pdb|1JOA| Nadh Peroxidase With Cysteine-Sulfenic Acid 28 1.0
pdb|1NHP| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 28 1.0
pdb|1CJ4|A Chain A, Mutant Q34t Of Para-Hydroxybenzoate Hyd... 28 1.0
pdb|1NHS| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 28 1.0
pdb|1DOB| P-Hydroxybenzoate Hydroxylase Mutant With Tyr 2... 28 1.0
pdb|1PBD| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.... 28 1.0
pdb|1BKW|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mu... 28 1.0
pdb|1PBF| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.... 28 1.0
pdb|1BGJ| P-Hydroxybenzoate Hydroxylase (Phbh) Mutant Wit... 28 1.0
pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxy... 28 1.0
pdb|1BF3| P-Hydroxybenzoate Hydroxylase (Phbh) Mutant Wit... 28 1.0
pdb|1NHQ| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 28 1.0
pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Co... 28 1.0
pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi ... 28 1.0
pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate... 28 1.0
pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxy... 28 1.0
pdb|1NHR| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 28 1.0
pdb|1BGN| P-Hydroxybenzoate Hydroxylase (Phbh) Mutant Wit... 28 1.0
pdb|1PXA| P-Hydroxybenzoate Hydroxylase (E.C.1.14.13.2) M... 28 1.0
pdb|1PXC| P-Hydroxybenzoate Hydroxylase (E.C.1.14.13.2) M... 28 1.0
pdb|1PXB| P-Hydroxybenzoate Hydroxylase (E.C.1.14.13.2) M... 28 1.0
pdb|1DOC| P-Hydroxybenzoate Hydroxylase Complexed With 4-... 28 1.0
pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mu... 28 1.0
pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate... 28 1.0
pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reducta... 28 1.0
pdb|1NPX| Nadh Peroxidase (E.C.1.11.1.1) Non-Active Form ... 28 1.0
pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Fer... 28 1.3
pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught ... 28 1.8
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small S... 28 1.8
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthe... 28 1.8
pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydroge... 27 2.3
pdb|1B26|A Chain A, Glutamate Dehydrogenase >gi|6730076|pdb... 27 2.3
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxida... 27 2.3
pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydroge... 27 2.3
pdb|3LAD|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8... 27 3.0
pdb|1KRE|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mann... 27 3.9
pdb|1QO8|A Chain A, The Structure Of The Open Conformation ... 26 5.1
pdb|1GOS|A Chain A, Human Monoamine Oxidase B >gi|17942912|... 25 8.7
pdb|1QLA|A Chain A, Respiratory Complex Ii-Like Fumarate Re... 25 8.7
pdb|1KNR|A Chain A, L-Aspartate Oxidase: R386l Mutant >gi|2... 25 8.7
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinell... 25 8.7
pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinell... 25 8.7
pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Impli... 25 8.7
>pdb|1TDE| Thioredoxin Reductase (E.C.1.6.4.5) (Wild Type)
Length = 316
Score = 196 bits (497), Expect = 4e-51
Identities = 113/312 (36%), Positives = 184/312 (58%), Gaps = 15/312 (4%)
Query: 6 IIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPW 65
I+G GPAG +A +YA R ++ VL GGQ+T ++E+EN+PG ++G M+
Sbjct: 10 ILGSGPAGYTAAVYAARANLQ-PVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERM 68
Query: 66 QEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEY 125
E +F + + +V ++ F + ++G+ + ++IIATG S + G+ E +
Sbjct: 69 HEHATKFETEIIFDHINKVDLQNRPFRLNGDNGE-YTCDALIIATGASARYLGLPSEEAF 127
Query: 126 WGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITL 185
G+GVS CATCDGFFY+N++VAV+GGG+TAVEEA+YL+NI +V+LIHRRDGFR I +
Sbjct: 128 KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILI 187
Query: 186 EHAKN---NDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRE-LVVPGFFIFVGYDV 241
+ + N I T +EE+ GD GV+ + +++T ++ E L V G F+ +G+
Sbjct: 188 KRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 247
Query: 242 NNAV----LKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVCAASDG 297
N A+ L+ E+ + + +G+ + +T++ G+FAAGD+ +Q + +A G
Sbjct: 248 NTAIFEGQLELENGYIKVQSGIHGN-----ATQTSIPGVFAAGDVMDHIYRQAITSAGTG 302
Query: 298 ATAALSVISYLE 309
AAL YL+
Sbjct: 303 CMAALDAERYLD 314
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 196 bits (497), Expect = 4e-51
Identities = 113/312 (36%), Positives = 184/312 (58%), Gaps = 15/312 (4%)
Query: 6 IIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPW 65
I+G GPAG +A +YA R ++ VL GGQ+T ++E+EN+PG ++G M+
Sbjct: 10 ILGSGPAGYTAAVYAARANLQ-PVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERM 68
Query: 66 QEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEY 125
E +F + + +V ++ F + ++G+ + ++IIATG S + G+ E +
Sbjct: 69 HEHATKFETEIIFDHINKVDLQNRPFRLNGDNGE-YTCDALIIATGASARYLGLPSEEAF 127
Query: 126 WGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITL 185
G+GVS CATCDGFFY+N++VAV+GGG+TAVEEA+YL+NI +V+LIHRRDGFR I +
Sbjct: 128 KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILI 187
Query: 186 EHAKN---NDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRE-LVVPGFFIFVGYDV 241
+ + N I T +EE+ GD GV+ + +++T ++ E L V G F+ +G+
Sbjct: 188 KRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 247
Query: 242 NNAV----LKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVCAASDG 297
N A+ L+ E+ + + +G+ + +T++ G+FAAGD+ +Q + +A G
Sbjct: 248 NTAIFEGQLELENGYIKVQSGIHGN-----ATQTSIPGVFAAGDVMDHIYRQAITSAGTG 302
Query: 298 ATAALSVISYLE 309
AAL YL+
Sbjct: 303 CMAALDAERYLD 314
>pdb|1TRB| Thioredoxin Reductase (E.C.1.6.4.5) Mutant With Cys 138 Replaced
By Ser (C138s)
Length = 320
Score = 192 bits (487), Expect = 5e-50
Identities = 112/312 (35%), Positives = 183/312 (57%), Gaps = 15/312 (4%)
Query: 6 IIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPW 65
I+G GPAG +A +YA R ++ VL GGQ+T ++E+EN+PG ++G M+
Sbjct: 10 ILGSGPAGYTAAVYAARANLQ-PVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERM 68
Query: 66 QEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEY 125
E +F + + +V ++ F + ++G+ + ++IIATG S + G+ E +
Sbjct: 69 HEHATKFETEIIFDHINKVDLQNRPFRLNGDNGE-YTCDALIIATGASARYLGLPSEEAF 127
Query: 126 WGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITL 185
G+GVS CAT DGFFY+N++VAV+GGG+TAVEEA+YL+NI +V+LIHRRDGFR I +
Sbjct: 128 KGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILI 187
Query: 186 EHAKN---NDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRE-LVVPGFFIFVGYDV 241
+ + N I T +EE+ GD GV+ + +++T ++ E L V G F+ +G+
Sbjct: 188 KRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 247
Query: 242 NNAV----LKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVCAASDG 297
N A+ L+ E+ + + +G+ + +T++ G+FAAGD+ +Q + +A G
Sbjct: 248 NTAIFEGQLELENGYIKVQSGIHGN-----ATQTSIPGVFAAGDVMDHIYRQAITSAGTG 302
Query: 298 ATAALSVISYLE 309
AAL YL+
Sbjct: 303 CMAALDAERYLD 314
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 192 bits (487), Expect = 5e-50
Identities = 112/312 (35%), Positives = 183/312 (57%), Gaps = 15/312 (4%)
Query: 6 IIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPW 65
I+G GPAG +A +YA R ++ VL GGQ+T ++E+EN+PG ++G M+
Sbjct: 10 ILGSGPAGYTAAVYAARANLQ-PVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERM 68
Query: 66 QEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEY 125
E +F + + +V ++ F + ++G+ + ++IIATG S + G+ E +
Sbjct: 69 HEHATKFETEIIFDHINKVDLQNRPFRLNGDNGE-YTCDALIIATGASARYLGLPSEEAF 127
Query: 126 WGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITL 185
G+GVS ATCDGFFY+N++VAV+GGG+TAVEEA+YL+NI +V+LIHRRDGFR I +
Sbjct: 128 KGRGVSASATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILI 187
Query: 186 EHAKN---NDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRE-LVVPGFFIFVGYDV 241
+ + N I T +EE+ GD GV+ + +++T ++ E L V G F+ +G+
Sbjct: 188 KRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 247
Query: 242 NNAV----LKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVCAASDG 297
N A+ L+ E+ + + +G+ + +T++ G+FAAGD+ +Q + +A G
Sbjct: 248 NTAIFEGQLELENGYIKVQSGIHGN-----ATQTSIPGVFAAGDVMDHIYRQAITSAGTG 302
Query: 298 ATAALSVISYLE 309
AAL YL+
Sbjct: 303 CMAALDAERYLD 314
>pdb|1TDF| Thioredoxin Reductase (E.C.1.6.4.5) Mutant With Cys 138 Replaced
By Ser (C138s)
Length = 316
Score = 192 bits (487), Expect = 5e-50
Identities = 112/312 (35%), Positives = 183/312 (57%), Gaps = 15/312 (4%)
Query: 6 IIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPW 65
I+G GPAG +A +YA R ++ VL GGQ+T ++E+EN+PG ++G M+
Sbjct: 10 ILGSGPAGYTAAVYAARANLQ-PVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERM 68
Query: 66 QEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEY 125
E +F + + +V ++ F + ++G+ + ++IIATG S + G+ E +
Sbjct: 69 HEHATKFETEIIFDHINKVDLQNRPFRLNGDNGE-YTCDALIIATGASARYLGLPSEEAF 127
Query: 126 WGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITL 185
G+GVS CAT DGFFY+N++VAV+GGG+TAVEEA+YL+NI +V+LIHRRDGFR I +
Sbjct: 128 KGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILI 187
Query: 186 EHAKN---NDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRE-LVVPGFFIFVGYDV 241
+ + N I T +EE+ GD GV+ + +++T ++ E L V G F+ +G+
Sbjct: 188 KRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 247
Query: 242 NNAV----LKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVCAASDG 297
N A+ L+ E+ + + +G+ + +T++ G+FAAGD+ +Q + +A G
Sbjct: 248 NTAIFEGQLELENGYIKVQSGIHGN-----ATQTSIPGVFAAGDVMDHIYRQAITSAGTG 302
Query: 298 ATAALSVISYLE 309
AAL YL+
Sbjct: 303 CMAALDAERYLD 314
>pdb|1VDC| Structure Of Nadph Dependent Thioredoxin Reductase
Length = 333
Score = 179 bits (455), Expect = 3e-46
Identities = 113/317 (35%), Positives = 168/317 (52%), Gaps = 19/317 (5%)
Query: 6 IIGGGPAGLSAGLYATRGGVKNAVLFEKGM-----PGGQITGSSEIENYPGVKEVVSGLD 60
I+G GPA +A +YA R +K +LFE M PGGQ+T ++++EN+PG E + G++
Sbjct: 13 IVGSGPAAHTAAIYAARAELK-PLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVE 71
Query: 61 FMQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIK 120
+++Q RFG V +V F + D K A +VI+A G KR
Sbjct: 72 LTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFV 130
Query: 121 GESE----YWGKGVSTCATCDGF--FYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHR 174
G E +W +G+S CA CDG ++NK +AV+GGGD+A+EEA +L KVY+IHR
Sbjct: 131 GSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 190
Query: 175 RDGFRCAPITLEHAKNNDKIEFLTPYVVEEIKGDASG--VSSLSIKNTATNEKRELVVPG 232
RD FR + I + A +N KI+ + V E GD + L +KN T + +L V G
Sbjct: 191 RDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSG 250
Query: 233 FFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVC 292
F +G++ L D + D Y + + +T+V G+FAAGD++ +Q +
Sbjct: 251 LFFAIGHEPATKFL---DGGVELDSDGY-VVTKPGTTQTSVPGVFAAGDVQDKKYRQAIT 306
Query: 293 AASDGATAALSVISYLE 309
AA G AAL YL+
Sbjct: 307 AAGTGCMAALDAEHYLQ 323
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 147 bits (370), Expect = 2e-36
Identities = 98/314 (31%), Positives = 156/314 (49%), Gaps = 20/314 (6%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFM 62
D I+G GPAG +A +Y+ R G++ ++ E+ GGQI + +IENY V + G
Sbjct: 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERF--GGQILDTVDIENYISVPKT-EGQKLA 59
Query: 63 QPWQEQCFRFGLKHEMTAVQRVSKKDSHFV------ILAEDGKTFEAKSVIIATGGSPKR 116
+ + + ++ Q SK V I G +A+S+I+ATG +
Sbjct: 60 GALKVHVDEYDV--DVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN 117
Query: 117 TGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRD 176
+ GE +Y KGV+ C CDG +K K VAV+GGG++ VE AI LA I + V L+
Sbjct: 118 MNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 177
Query: 177 GFRCAPITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIF 236
+ + + ++ ++ + E+KGD S V L ++ + + + + G F+
Sbjct: 178 EMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQ 237
Query: 237 VGYDVNNAVLK--QEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVCAA 294
+G N L+ E N M G I++D +TNV+G+FAAGD KQ++ A
Sbjct: 238 IGLLPNTNWLEGAVERNRM-------GEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIAT 290
Query: 295 SDGATAALSVISYL 308
+GA A+LS YL
Sbjct: 291 GEGAKASLSAFDYL 304
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 145 bits (366), Expect = 6e-36
Identities = 96/314 (30%), Positives = 156/314 (49%), Gaps = 20/314 (6%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFM 62
D I+G GPAG +A +Y+ R G++ ++ E+ GGQ+ + +IENY V + G
Sbjct: 214 DVLIVGSGPAGAAAAVYSARKGIRTGLMGERF--GGQVLDTVDIENYISVPKT-EGQKLA 270
Query: 63 QPWQEQCFRFGLKHEMTAVQRVSK------KDSHFVILAEDGKTFEAKSVIIATGGSPKR 116
+ + + ++ Q SK + I G +A+S+IIATG +
Sbjct: 271 GALKAHVSDYDV--DVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN 328
Query: 117 TGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRD 176
+ GE +Y KGV+ C CDG +K K VAV+GGG++ VE AI LA I + V L+
Sbjct: 329 MNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 388
Query: 177 GFRCAPITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIF 236
+ + + ++ ++ + E+KGD S V L ++ + + + + G F+
Sbjct: 389 EMKADQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQ 448
Query: 237 VGYDVNNAVLK--QEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVCAA 294
+G N L+ E N M G I++D +T+V+G+FAAGD KQ++ A
Sbjct: 449 IGLLPNTHWLEGALERNRM-------GEIIIDAKCETSVKGVFAAGDCTTVPYKQIIIAT 501
Query: 295 SDGATAALSVISYL 308
+GA A+LS YL
Sbjct: 502 GEGAKASLSAFDYL 515
>pdb|1GER|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Complexed With Fad
pdb|1GET|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Wild-Type Complexed
With Nadp And Fad
pdb|1GER|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Complexed With Fad
pdb|1GET|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Wild-Type Complexed
With Nadp And Fad
Length = 450
Score = 52.4 bits (124), Expect = 7e-08
Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 31/200 (15%)
Query: 94 LAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKN---KEVAVLG 150
L +G+T A ++IATGG P I G EY G+ + DGFF + VAV+G
Sbjct: 123 LEVNGETITADHILIATGGRPSHPDIPGV-EY---GIDS----DGFFALPALPERVAVVG 174
Query: 151 GGDTAVEEAIYLANICKKVYLIHRRDGFRCAPI---------TLEHAKNNDKIEFLTPYV 201
G AVE A + + K +L R+ AP+ TL N + + T +
Sbjct: 175 AGYIAVELAGVINGLGAKTHLFVRKH----APLRSFDPMISETLVEVMNAEGPQLHTNAI 230
Query: 202 VEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYG 261
+ + + G +L ++ + R V +G + N + E + K +E G
Sbjct: 231 PKAVVKNTDGSLTLELE-----DGRSETVDCLIWAIGREPANDNINLEAAGV--KTNEKG 283
Query: 262 SIVVDFSMKTNVQGLFAAGD 281
IVVD TN++G++A GD
Sbjct: 284 YIVVDKYQNTNIEGIYAVGD 303
>pdb|1GSN| Human Glutathione Reductase Modified By Dinitrosoglutathione
Length = 478
Score = 52.4 bits (124), Expect = 7e-08
Identities = 78/319 (24%), Positives = 118/319 (36%), Gaps = 47/319 (14%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSG---- 58
D +IGGG GL++ A G + AV+ E GG + V
Sbjct: 22 DYLVIGGGSGGLASARRAAELGARAAVV-ESHKLGGTCVNVGXVPKKVMWNTAVHSEFMH 80
Query: 59 --LDFMQPWQEQCFRFGLKHE--------MTAVQRVSKKDSHFVILAE------------ 96
D+ P E F + + E + A+ + + SH I+
Sbjct: 81 DHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTI 140
Query: 97 --DGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNK---EVAVLGG 151
GK + A ++IATGG P ES+ G S T DGFF + ++G
Sbjct: 141 EVSGKKYTAPHILIATGGMPSTPH---ESQI--PGASLGITSDGFFQLEELPGRSVIVGA 195
Query: 152 GDTAVEEAIYLANICKKVYLIHRRDGF-----RCAPITLEHAKNNDKIEFLTPYVVEEIK 206
G AVE A L+ + K L+ R D N +E L V+E+K
Sbjct: 196 GYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNXTEELENAGVEVLKFSQVKEVK 255
Query: 207 GDASGVSSLSIKNTATNEKRELVVPGFFIF---VGYDVNNAVLKQEDNSMLCKCDEYGSI 263
SG+ + ++P +G N L N + + D+ G I
Sbjct: 256 KTLSGLEVSMVTAVPGRLPVMTMIPDVDXLLWAIGRVPNTKDLSL--NKLGIQTDDKGHI 313
Query: 264 VVDFSMKTNVQGLFAAGDI 282
+VD TNV+G++A GD+
Sbjct: 314 IVDEFQNTNVKGIYAVGDV 332
>pdb|1DNC| Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 52.4 bits (124), Expect = 7e-08
Identities = 78/319 (24%), Positives = 118/319 (36%), Gaps = 47/319 (14%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSG---- 58
D +IGGG GL++ A G + AV+ E GG + V
Sbjct: 22 DYLVIGGGSGGLASARRAAELGARAAVV-ESHKLGGTCVNVGXVPKKVMWNTAVHSEFMH 80
Query: 59 --LDFMQPWQEQCFRFGLKHE--------MTAVQRVSKKDSHFVILAE------------ 96
D+ P E F + + E + A+ + + SH I+
Sbjct: 81 DHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTI 140
Query: 97 --DGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNK---EVAVLGG 151
GK + A ++IATGG P ES+ G S T DGFF + ++G
Sbjct: 141 EVSGKKYTAPHILIATGGMPSTPH---ESQI--PGASLGITSDGFFQLEELPGRSVIVGA 195
Query: 152 GDTAVEEAIYLANICKKVYLIHRRDGF-----RCAPITLEHAKNNDKIEFLTPYVVEEIK 206
G AVE A L+ + K L+ R D N +E L V+E+K
Sbjct: 196 GYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVK 255
Query: 207 GDASGVSSLSIKNTATNEKRELVVPGFFIF---VGYDVNNAVLKQEDNSMLCKCDEYGSI 263
SG+ + ++P +G N L N + + D+ G I
Sbjct: 256 KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSL--NKLGIQTDDKGHI 313
Query: 264 VVDFSMKTNVQGLFAAGDI 282
+VD TNV+G++A GD+
Sbjct: 314 IVDEFQNTNVKGIYAVGDV 332
>pdb|1GRT| Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 51.2 bits (121), Expect = 1e-07
Identities = 54/196 (27%), Positives = 80/196 (40%), Gaps = 18/196 (9%)
Query: 98 GKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNK---EVAVLGGGDT 154
GK + A ++IATGG P ES+ G S T DGFF + ++G G
Sbjct: 144 GKKYTAPHILIATGGMPSTPH---ESQI--PGASLGITSDGFFQLEELPGRSVIVGAGYI 198
Query: 155 AVEEAIYLANICKKVYLIHRRDGF-----RCAPITLEHAKNNDKIEFLTPYVVEEIKGDA 209
AVE A L+ + K L+ R D N +E L V+E+K
Sbjct: 199 AVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTL 258
Query: 210 SGVSSLSIKNTATNEKRELVVPGFFIF---VGYDVNNAVLKQEDNSMLCKCDEYGSIVVD 266
SG+ + ++P +G N L N + + D+ G I+VD
Sbjct: 259 SGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSL--NKLGIQTDDKGHIIVD 316
Query: 267 FSMKTNVQGLFAAGDI 282
TNV+G++A GD+
Sbjct: 317 EFQNTNVKGIYAVGDV 332
>pdb|5GRT| Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
pdb|3GRT| Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|2GRT| Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|4GRT| Human Glutathione Reductase A34e, R37w Mutant, Mixed Disulfide
Between Trypanothione And The Enzyme
Length = 461
Score = 51.2 bits (121), Expect = 1e-07
Identities = 54/196 (27%), Positives = 80/196 (40%), Gaps = 18/196 (9%)
Query: 98 GKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNK---EVAVLGGGDT 154
GK + A ++IATGG P ES+ G S T DGFF + ++G G
Sbjct: 127 GKKYTAPHILIATGGMPSTPH---ESQI--PGASLGITSDGFFQLEELPGRSVIVGAGYI 181
Query: 155 AVEEAIYLANICKKVYLIHRRDGF-----RCAPITLEHAKNNDKIEFLTPYVVEEIKGDA 209
AVE A L+ + K L+ R D N +E L V+E+K
Sbjct: 182 AVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTL 241
Query: 210 SGVSSLSIKNTATNEKRELVVPGFFIF---VGYDVNNAVLKQEDNSMLCKCDEYGSIVVD 266
SG+ + ++P +G N L N + + D+ G I+VD
Sbjct: 242 SGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSL--NKLGIQTDDKGHIIVD 299
Query: 267 FSMKTNVQGLFAAGDI 282
TNV+G++A GD+
Sbjct: 300 EFQNTNVKGIYAVGDV 315
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 51.2 bits (121), Expect = 1e-07
Identities = 54/196 (27%), Positives = 80/196 (40%), Gaps = 18/196 (9%)
Query: 98 GKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNK---EVAVLGGGDT 154
GK + A ++IATGG P ES+ G S T DGFF + ++G G
Sbjct: 129 GKKYTAPHILIATGGMPSTPH---ESQI--PGASLGITSDGFFQLEELPGRSVIVGAGYI 183
Query: 155 AVEEAIYLANICKKVYLIHRRDGF-----RCAPITLEHAKNNDKIEFLTPYVVEEIKGDA 209
AVE A L+ + K L+ R D N +E L V+E+K
Sbjct: 184 AVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTL 243
Query: 210 SGVSSLSIKNTATNEKRELVVPGFFIF---VGYDVNNAVLKQEDNSMLCKCDEYGSIVVD 266
SG+ + ++P +G N L N + + D+ G I+VD
Sbjct: 244 SGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSL--NKLGIQTDDKGHIIVD 301
Query: 267 FSMKTNVQGLFAAGDI 282
TNV+G++A GD+
Sbjct: 302 EFQNTNVKGIYAVGDV 317
>pdb|3GRS| Glutathione Reductase (E.C.1.6.4.2), Oxidized Form (E)
pdb|1GRB| Glutathione Reductase (E.C.1.6.4.2) (Oxidized) Complex With Nadh
And Phosphate
pdb|1GRA| Glutathione Reductase (E.C.1.6.4.2) (Oxidized) Complex With
Glutathione Disulfide And Nadp+
pdb|1GRE| Glutathione Reductase (E.C.1.6.4.2) Complex With Covalently Bound
Glutathione And Phosphate
pdb|1GRF| Glutathione Reductase (E.C.1.6.4.2) Carboxymethylated At Cys 58
Complex With Phosphate
pdb|1GRG| Glutathione Reductase (E.C.1.6.4.2) Modified By Bcnu
(1,3-Bis(2-Chloroethyl)-1-Nitrosourea) At Cys 58
Complexed With Phosphate
pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|4GR1| Glutathione Reductase (E.C.1.6.4.2) Oxidized Form Complexed With
Retro-Gssg
pdb|1GRH| Glutathione Reductase (E.C.1.6.4.2) Modified By Hecnu
(1-(2-Chloroethyl)-3-(2-Hydroxyethyl)-1-Nitrosourea) At
Cys 58 Complexed With Phosphate
Length = 478
Score = 51.2 bits (121), Expect = 1e-07
Identities = 54/196 (27%), Positives = 80/196 (40%), Gaps = 18/196 (9%)
Query: 98 GKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNK---EVAVLGGGDT 154
GK + A ++IATGG P ES+ G S T DGFF + ++G G
Sbjct: 144 GKKYTAPHILIATGGMPSTPH---ESQI--PGASLGITSDGFFQLEELPGRSVIVGAGYI 198
Query: 155 AVEEAIYLANICKKVYLIHRRDGF-----RCAPITLEHAKNNDKIEFLTPYVVEEIKGDA 209
AVE A L+ + K L+ R D N +E L V+E+K
Sbjct: 199 AVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTL 258
Query: 210 SGVSSLSIKNTATNEKRELVVPGFFIF---VGYDVNNAVLKQEDNSMLCKCDEYGSIVVD 266
SG+ + ++P +G N L N + + D+ G I+VD
Sbjct: 259 SGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSL--NKLGIQTDDKGHIIVD 316
Query: 267 FSMKTNVQGLFAAGDI 282
TNV+G++A GD+
Sbjct: 317 EFQNTNVKGIYAVGDV 332
>pdb|1XAN| Human Glutathione Reductase In Complex With A Xanthene Inhibitor
Length = 461
Score = 51.2 bits (121), Expect = 1e-07
Identities = 54/196 (27%), Positives = 80/196 (40%), Gaps = 18/196 (9%)
Query: 98 GKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNK---EVAVLGGGDT 154
GK + A ++IATGG P ES+ G S T DGFF + ++G G
Sbjct: 127 GKKYTAPHILIATGGMPSTPH---ESQI--PGASLGITSDGFFQLEELPGRSVIVGAGYI 181
Query: 155 AVEEAIYLANICKKVYLIHRRDGF-----RCAPITLEHAKNNDKIEFLTPYVVEEIKGDA 209
AVE A L+ + K L+ R D N +E L V+E+K
Sbjct: 182 AVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTL 241
Query: 210 SGVSSLSIKNTATNEKRELVVPGFFIF---VGYDVNNAVLKQEDNSMLCKCDEYGSIVVD 266
SG+ + ++P +G N L N + + D+ G I+VD
Sbjct: 242 SGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSL--NKLGIQTDDKGHIIVD 299
Query: 267 FSMKTNVQGLFAAGDI 282
TNV+G++A GD+
Sbjct: 300 EFQNTNVKGIYAVGDV 315
>pdb|1GES|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad
pdb|1GEU|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad And Fad
pdb|1GES|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad
pdb|1GEU|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad And Fad
Length = 450
Score = 48.9 bits (115), Expect = 7e-07
Identities = 55/200 (27%), Positives = 86/200 (42%), Gaps = 31/200 (15%)
Query: 94 LAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKN---KEVAVLG 150
L +G+T A ++IATGG P I G EY G+ + DGFF + VAV+G
Sbjct: 123 LEVNGETITADHILIATGGRPSHPDIPGV-EY---GIDS----DGFFALPALPERVAVVG 174
Query: 151 GGDTAVEEAIYLANICKKVYLIHRRDGFRCAPI---------TLEHAKNNDKIEFLTPYV 201
G VE + + K +L D AP+ TL N + + T +
Sbjct: 175 AGYIGVELGGVINGLGAKTHLFEMFD----APLPSFDPMISETLVEVMNAEGPQLHTNAI 230
Query: 202 VEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYG 261
+ + + G +L ++ + R V +G + N + E + K +E G
Sbjct: 231 PKAVVKNTDGSLTLELE-----DGRSETVDCLIWAIGREPANDNINLEAAGV--KTNEKG 283
Query: 262 SIVVDFSMKTNVQGLFAAGD 281
IVVD TN++G++A GD
Sbjct: 284 YIVVDKYQNTNIEGIYAVGD 303
>pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
Length = 499
Score = 48.5 bits (114), Expect = 1e-06
Identities = 54/195 (27%), Positives = 86/195 (43%), Gaps = 20/195 (10%)
Query: 99 KTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFF---YKNKEVAVLGGGDTA 155
K + A+ +IATG P+ GI G+ EY C + D F Y + V+G A
Sbjct: 150 KVYSAERFLIATGERPRYLGIPGDKEY-------CISSDDLFSLPYCPGKTLVVGASYVA 202
Query: 156 VEEAIYLANICKKVYLIHRRDGFR-----CAPITLEHAKNNDKIEFLTPYV---VEEIKG 207
+E A +LA I V ++ R R A EH + + I+F+ +V +E+I+
Sbjct: 203 LECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHG-IKFIRQFVPTKIEQIEA 261
Query: 208 DASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDF 267
G ++ K+T + E E + VG D + E + ++ G I V
Sbjct: 262 GTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKIN-EKTGKIPVTD 320
Query: 268 SMKTNVQGLFAAGDI 282
+TNV ++A GDI
Sbjct: 321 EEQTNVPYIYAIGDI 335
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 43.9 bits (102), Expect = 2e-05
Identities = 78/338 (23%), Positives = 132/338 (38%), Gaps = 48/338 (14%)
Query: 6 IIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG------------QITGSSEIENYP--- 50
++G GP G A + A + G K + EKG GG I+ S E
Sbjct: 8 VVGAGPGGYVAAIRAAQLGQK-VTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSE 66
Query: 51 --GVKEVVSGLDF--MQPWQEQCFR---FGLKHEMTAVQ-RVSKKDSHF-------VILA 95
G+K +DF +Q W+ + G++ + + + K +++F V+
Sbjct: 67 EMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNG 126
Query: 96 EDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTA 155
+ +T+ K+ IIATG P I+ + + + K + V+GGG
Sbjct: 127 DSAQTYTFKNAIIATGSRP----IELPNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIG 182
Query: 156 VEEAIYLANICKKVYLIHRR----DGF--RCAPITLEHAKNNDKIEFLTPYVVEEIKGDA 209
+E AN KV ++ GF + A I + K +E +T + KG
Sbjct: 183 IELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKG-VEVVTNALA---KGAE 238
Query: 210 SGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSM 269
+++ A E + + + VG N L E + K G I VD
Sbjct: 239 EREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGI--KMTNRGLIEVDQQC 296
Query: 270 KTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISY 307
+T+V +FA GDI + P A+ +G AA ++ +
Sbjct: 297 RTSVPNIFAIGDI-VPGPALAHKASYEGKVAAEAIAGH 333
>pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
Length = 478
Score = 41.6 bits (96), Expect = 1e-04
Identities = 76/346 (21%), Positives = 128/346 (36%), Gaps = 57/346 (16%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG------------------------ 38
D IIGGGPAG A + A + G A + ++G GG
Sbjct: 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMH 66
Query: 39 --------QITGSSEIE--NY-----PGVKEVVSGLDFMQPWQEQCFRFGL-KHEMTAVQ 82
+ G +I N+ VK++ G++ + + + G E
Sbjct: 67 TEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKI 126
Query: 83 RVSKKDSHFVILAEDGKTFEAKSVIIATGGS-PKRTGIKGESEYWGKGVSTCATCDGFFY 141
RV+ D + ED + K++I+ATG GI+ + E K VS+
Sbjct: 127 RVTPVDGLEGTVKED-HILDVKNIIVATGSEVTPFPGIEIDEE---KIVSSTGAL-SLKE 181
Query: 142 KNKEVAVLGGGDTAVEEAIYLANICKKVYLIH-------RRDGFRCAPITLEHAKNNDKI 194
K + ++GGG +E + + KV ++ DG A T + K
Sbjct: 182 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDG-EVAKATQKFLKKQGLD 240
Query: 195 EFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSML 254
L+ V+ + D V + +++T TN++ L + VG A L E +
Sbjct: 241 FKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGL- 299
Query: 255 CKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVCAASDGATA 300
+ D+ G +V+D + + GD+ F P A +G A
Sbjct: 300 -EVDKRGRLVIDDQFNSKFPHIKVVGDV-TFGPMLAHKAEEEGIAA 343
>pdb|1TYP|A Chain A, Trypanothione Reductase (E.C.1.6.4.8) Complex With
N1-Glutathionylspermidine Disulfide And Nadp+
pdb|1TYP|B Chain B, Trypanothione Reductase (E.C.1.6.4.8) Complex With
N1-Glutathionylspermidine Disulfide And Nadp+
Length = 487
Score = 40.4 bits (93), Expect = 3e-04
Identities = 63/257 (24%), Positives = 105/257 (40%), Gaps = 57/257 (22%)
Query: 47 ENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSV 106
++Y G+ GL F Q W L+ T + R S + V+ +T + + +
Sbjct: 108 DSYEGMFADTEGLTFHQGWG------ALQDNHTVLVRESADPNSAVL-----ETLDTEYI 156
Query: 107 IIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKN---KEVAVLGGGDTAVEEA-IYL 162
++ATG P+ GI+G+ C T + FY + K +GGG ++E A I+
Sbjct: 157 LLATGSWPQHLGIEGD--------DLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFN 208
Query: 163 ANICK--KVYLIHRRD----GFRCAPITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLS 216
A + +V L +R D GF L + E+++ A+G++ +
Sbjct: 209 AYKARGGQVDLAYRGDMILRGFDSE---------------LRKQLTEQLR--ANGINVRT 251
Query: 217 IKNTATNEKR----ELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCD-------EYGSIVV 265
+N A K VV YDV + + S + D + G+I V
Sbjct: 252 HENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKV 311
Query: 266 DFSMKTNVQGLFAAGDI 282
D KTNV ++A GD+
Sbjct: 312 DAYSKTNVDNIYAIGDV 328
>pdb|1TYT|A Chain A, Trypanothione Reductase (E.C.1.6.4.8) (Oxidized Form (E))
Length = 487
Score = 37.4 bits (85), Expect = 0.002
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 53/224 (23%)
Query: 87 KDSHFVILAEDG-------KTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGF 139
+D+H V++ E +T + + +++ATG P+ GI+G+ C T +
Sbjct: 130 QDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGD--------DLCITSNEA 181
Query: 140 FYKN---KEVAVLGGGDTAVEEA-IYLANICK--KVYLIHRRD----GFRCAPITLEHAK 189
FY + K +GGG ++E A I+ A + +V L +R D GF
Sbjct: 182 FYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSE-------- 233
Query: 190 NNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKR----ELVVPGFFIFVGYDVNNAV 245
L + E+++ A+G++ + +N A K VV YDV
Sbjct: 234 -------LRKQLTEQLR--ANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLA 284
Query: 246 LKQEDNSMLCKCD-------EYGSIVVDFSMKTNVQGLFAAGDI 282
+ + S + D + G+I VD KTNV ++A GD+
Sbjct: 285 IGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 328
>pdb|1TYT|B Chain B, Trypanothione Reductase (E.C.1.6.4.8) (Oxidized Form (E))
Length = 486
Score = 37.4 bits (85), Expect = 0.002
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 53/224 (23%)
Query: 87 KDSHFVILAEDG-------KTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGF 139
+D+H V++ E +T + + +++ATG P+ GI+G+ C T +
Sbjct: 129 QDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGD--------DLCITSNEA 180
Query: 140 FYKN---KEVAVLGGGDTAVEEA-IYLANICK--KVYLIHRRD----GFRCAPITLEHAK 189
FY + K +GGG ++E A I+ A + +V L +R D GF
Sbjct: 181 FYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSE-------- 232
Query: 190 NNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKR----ELVVPGFFIFVGYDVNNAV 245
L + E+++ A+G++ + +N A K VV YDV
Sbjct: 233 -------LRKQLTEQLR--ANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLA 283
Query: 246 LKQEDNSMLCKCD-------EYGSIVVDFSMKTNVQGLFAAGDI 282
+ + S + D + G+I VD KTNV ++A GD+
Sbjct: 284 IGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
>pdb|2TPR|A Chain A, Trypanothione Reductase (E.C.1.6.4.8)
pdb|2TPR|B Chain B, Trypanothione Reductase (E.C.1.6.4.8)
Length = 490
Score = 35.8 bits (81), Expect = 0.006
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 53/224 (23%)
Query: 87 KDSHFVILAEDG-------KTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGF 139
+D+H V++ E +T + + +++ATG P+ GI+G+ C T +
Sbjct: 129 QDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGD--------DLCITSNEA 180
Query: 140 FYKN---KEVAVLGGGDTAVEEA-IYLANICK--KVYLIHRRD----GFRCAPITLEHAK 189
FY + K +GGG ++E A I+ A + +V L +R D GF
Sbjct: 181 FYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSE-------- 232
Query: 190 NNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKR----ELVVPGFFIFVGYDVNNAV 245
L + E+++ A+G++ + +N A K VV YDV
Sbjct: 233 -------LRKQLTEQLR--ANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLA 283
Query: 246 LKQEDNSMLCKCD-------EYGSIVVDFSMKTNVQGLFAAGDI 282
+ + S + + + G+I VD KTNV ++A GD+
Sbjct: 284 IGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
>pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
Length = 490
Score = 35.8 bits (81), Expect = 0.006
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 53/224 (23%)
Query: 87 KDSHFVILAEDG-------KTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGF 139
+D+H V++ E +T + + +++ATG P+ GI+G+ C T +
Sbjct: 129 QDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGD--------DLCITSNEA 180
Query: 140 FYKN---KEVAVLGGGDTAVEEA-IYLANICK--KVYLIHRRD----GFRCAPITLEHAK 189
FY + K +GGG ++E A I+ A + +V L +R D GF
Sbjct: 181 FYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSE-------- 232
Query: 190 NNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKR----ELVVPGFFIFVGYDVNNAV 245
L + E+++ A+G++ + +N A K VV YDV
Sbjct: 233 -------LRKQLTEQLR--ANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLA 283
Query: 246 LKQEDNSMLCKCD-------EYGSIVVDFSMKTNVQGLFAAGDI 282
+ + S + + + G+I VD KTNV ++A GD+
Sbjct: 284 IGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
>pdb|1OJT| Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 34.3 bits (77), Expect = 0.019
Identities = 72/345 (20%), Positives = 126/345 (35%), Gaps = 55/345 (15%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQ------ITGSSEIENYPGVKEV- 55
D ++GGGP G SA A G+K A++ GG I + + N + EV
Sbjct: 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVR 67
Query: 56 ---VSGLDFMQPWQE----QCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAK--SV 106
+G+ + +P + + ++ G+ +T K ++ DG+ + V
Sbjct: 68 HLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEV 127
Query: 107 IIATGGSPKRTGIKGESEYWGKGVSTCATCDG-------FFYKN------------KEV- 146
+ G + ++ GE + C G F ++ KEV
Sbjct: 128 SLTAGDAYEQAAPTGEKKI--VAFKNCIIAAGSRVTKLPFIPEDPRIIDSSGALALKEVP 185
Query: 147 ---AVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCA---PITLEHAKNN----DKIEF 196
++GGG +E + + ++ ++ DG + K N D I
Sbjct: 186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMV 245
Query: 197 LTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCK 256
T V E K D V+ ++ + V+ + G N ++ E +
Sbjct: 246 NTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVL----VAAGRAPNGKLISAEKAGV--A 299
Query: 257 CDEYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVCAASDGATAA 301
+ G I VD M+TNV ++A GDI + P A +G AA
Sbjct: 300 VTDRGFIEVDKQMRTNVPHIYAIGDI-VGQPMLAHKAVHEGHVAA 343
>pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
Length = 1025
Score = 34.3 bits (77), Expect = 0.019
Identities = 75/339 (22%), Positives = 138/339 (40%), Gaps = 55/339 (16%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVS-GLDFMQ 63
A++G GPA +S + R G + +FEK G ++ +SEI + +VV+ ++ M+
Sbjct: 191 ALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS-TSEIPQFRLPYDVVNFEIELMK 249
Query: 64 PWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRT-----G 118
G+K + + +S+ + L E+G K+ I G +T G
Sbjct: 250 D-------LGVK--IICGKSLSENEITLNTLKEEG----YKAAFIGIGLPEPKTDDIFQG 296
Query: 119 IKGESEYW-----------GKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANI-C 166
+ + ++ CA V VLG GDTA + A
Sbjct: 297 LTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGA 356
Query: 167 KKVYLIHRRD--GFRCAPITLEHAKNN--DKIEFLTPYVVEEIKGDASGVSSLSIKNTAT 222
++V+L+ R+ R P +E AK + + FL+P V G V + + T
Sbjct: 357 RRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDET 416
Query: 223 NE-----------KRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVD-FSMK 270
+ K ++V+ F G + + +K+ + + K + + VD +M+
Sbjct: 417 GKWNEDEDQIVHLKADVVISAF----GSVLRDPKVKEALSPI--KFNRWDLPEVDPETMQ 470
Query: 271 TNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYLE 309
T+ +FA GDI + V + +DG A+ + Y++
Sbjct: 471 TSEPWVFAGGDI-VGMANTTVESVNDGKQASWYIHKYIQ 508
>pdb|1BHY| Low Temperature Middle Resolution Structure Of P64k From Masc Data
Length = 482
Score = 34.3 bits (77), Expect = 0.019
Identities = 72/345 (20%), Positives = 126/345 (35%), Gaps = 55/345 (15%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQ------ITGSSEIENYPGVKEV- 55
D ++GGGP G SA A G+K A++ GG I + + N + EV
Sbjct: 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVR 67
Query: 56 ---VSGLDFMQPWQE----QCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAK--SV 106
+G+ + +P + + ++ G+ +T K ++ DG+ + V
Sbjct: 68 HLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEV 127
Query: 107 IIATGGSPKRTGIKGESEYWGKGVSTCATCDG-------FFYKN------------KEV- 146
+ G + ++ GE + C G F ++ KEV
Sbjct: 128 SLTAGDAYEQAAPTGEKKI--VAFKNCIIAAGSRVTKLPFIPEDPRIIDSSGALALKEVP 185
Query: 147 ---AVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCA---PITLEHAKNN----DKIEF 196
++GGG +E + + ++ ++ DG + K N D I
Sbjct: 186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMV 245
Query: 197 LTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCK 256
T V E K D V+ ++ + V+ + G N ++ E +
Sbjct: 246 NTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVL----VAAGRAPNGKLISAEKAGV--A 299
Query: 257 CDEYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVCAASDGATAA 301
+ G I VD M+TNV ++A GDI + P A +G AA
Sbjct: 300 VTDRGFIEVDKQMRTNVPHIYAIGDI-VGQPMLAHKAVHEGHVAA 343
>pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
Length = 1025
Score = 34.3 bits (77), Expect = 0.019
Identities = 75/339 (22%), Positives = 138/339 (40%), Gaps = 55/339 (16%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVS-GLDFMQ 63
A++G GPA +S + R G + +FEK G ++ +SEI + +VV+ ++ M+
Sbjct: 191 ALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS-TSEIPQFRLPYDVVNFEIELMK 249
Query: 64 PWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRT-----G 118
G+K + + +S+ + L E+G K+ I G +T G
Sbjct: 250 D-------LGVK--IICGKSLSENEITLNTLKEEG----YKAAFIGIGLPEPKTDDIFQG 296
Query: 119 IKGESEYW-----------GKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANI-C 166
+ + ++ CA V VLG GDTA + A
Sbjct: 297 LTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGA 356
Query: 167 KKVYLIHRRD--GFRCAPITLEHAKNN--DKIEFLTPYVVEEIKGDASGVSSLSIKNTAT 222
++V+L+ R+ R P +E AK + + FL+P V G V + + T
Sbjct: 357 RRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDET 416
Query: 223 NE-----------KRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVD-FSMK 270
+ K ++V+ F G + + +K+ + + K + + VD +M+
Sbjct: 417 GKWNEDEDQIVHLKADVVISAF----GSVLRDPKVKEALSPI--KFNRWDLPEVDPETMQ 470
Query: 271 TNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYLE 309
T+ +FA GDI + V + +DG A+ + Y++
Sbjct: 471 TSEPWVFAGGDI-VGMANTTVESVNDGKQASWYIHKYIQ 508
>pdb|1LPF|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex With
Flavin-Adenine-Dinucleotide (Fad)
pdb|1LPF|B Chain B, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex With
Flavin-Adenine-Dinucleotide (Fad)
Length = 477
Score = 33.5 bits (75), Expect = 0.032
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 15/193 (7%)
Query: 97 DGKT--FEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDT 154
DGKT EA++VIIA+G P S+ + F K++ V+G G
Sbjct: 135 DGKTQVLEAENVIIASGSRPVEIPPAPLSD---DIIVDSTGALEFQAVPKKLGVIGAGVI 191
Query: 155 AVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNDKIEFLTPYVVEEIKGDASGVSS 214
+E A + +V ++ D F A + + ++ LT + G S
Sbjct: 192 GLELGSVWARLGAEVTVLEALDKFLPAA---DEQIAKEALKVLTKQGLNIRLGARVTASE 248
Query: 215 LSIKN-----TATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSM 269
+ K T N +++ + VG L D+ + DE G I VD
Sbjct: 249 VKKKQVTVTFTDANGEQKETFDKLIVAVGRRPVTTDLLAADSGVTL--DERGFIYVDDHC 306
Query: 270 KTNVQGLFAAGDI 282
KT+V G+FA GD+
Sbjct: 307 KTSVPGVFAIGDV 319
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 32.3 bits (72), Expect = 0.071
Identities = 77/334 (23%), Positives = 124/334 (37%), Gaps = 48/334 (14%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYP------------ 50
D IIGGGP G A + A + G K + ++G GG I +
Sbjct: 8 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAK 67
Query: 51 ------GVK--EVVSGLDFMQPWQEQCFR------FGL--KHEMTAVQR----VSKKDSH 90
GVK V L M +++ GL K+++T V+ VS +
Sbjct: 68 HSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEIS 127
Query: 91 FVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLG 150
+ + + K +IIATG K + G + K VS+ K++ V+G
Sbjct: 128 VDTIEGENTVVKGKHIIIATGSDVK--SLPGVTIDEKKIVSSTGAL-ALSEIPKKLVVIG 184
Query: 151 GGDTAVEEAIYLANICKKVYLIH-------RRDGFRCAPITLEHAKNNDKIEFLTPYVVE 203
G +E I +V ++ D K K + T V
Sbjct: 185 AGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGV 244
Query: 204 EIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSI 263
+ GD GV L+++ +A E+ + + G + L + + + D+ G I
Sbjct: 245 DTSGD--GV-KLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGV--ETDKLGRI 299
Query: 264 VVDFSMKTNVQGLFAAGDIRIFAPKQVVCAASDG 297
+V+ TNV G++A GD+ I P A DG
Sbjct: 300 LVNERFSTNVSGVYAIGDV-IPGPMLAHKAEEDG 332
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 32.0 bits (71), Expect = 0.093
Identities = 16/36 (44%), Positives = 22/36 (60%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG 38
D IIG G AGL+A + A G K +L ++ +PGG
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG 163
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 32.0 bits (71), Expect = 0.093
Identities = 16/36 (44%), Positives = 22/36 (60%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG 38
D IIG G AGL+A + A G K +L ++ +PGG
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG 163
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.0 bits (66), Expect = 0.35
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG 38
+D ++G G AG SA + AT G K ++ ++ + GG
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 30.0 bits (66), Expect = 0.35
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG 38
+D ++G G AG SA + AT G K ++ ++ + GG
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.0 bits (66), Expect = 0.35
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG 38
+D ++G G AG SA + AT G K ++ ++ + GG
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.0 bits (66), Expect = 0.35
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG 38
+D ++G G AG SA + AT G K ++ ++ + GG
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
Length = 571
Score = 30.0 bits (66), Expect = 0.35
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG 38
+D ++G G AG SA + AT G K ++ ++ + GG
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.0 bits (66), Expect = 0.35
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG 38
+D ++G G AG SA + AT G K ++ ++ + GG
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.0 bits (66), Expect = 0.35
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG 38
+D ++G G AG SA + AT G K ++ ++ + GG
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 30.0 bits (66), Expect = 0.35
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG 38
+D ++G G AG SA + AT G K ++ ++ + GG
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 30.0 bits (66), Expect = 0.35
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG 38
+D ++G G AG SA + AT G K ++ ++ + GG
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163
>pdb|1NDA|A Chain A, Trypanothione Oxidoreductase (E.C.1.6.4.8) (Oxidized)
pdb|1NDA|B Chain B, Trypanothione Oxidoreductase (E.C.1.6.4.8) (Oxidized)
Length = 491
Score = 29.3 bits (64), Expect = 0.60
Identities = 44/194 (22%), Positives = 86/194 (43%), Gaps = 31/194 (15%)
Query: 102 EAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFY---KNKEVAVLGGGDTAVEE 158
E +++++A+G P I G + C + + FY + V +GGG +VE
Sbjct: 152 ETENILLASGSWPHMPNIPG--------IEHCISSNEAFYLPEPPRRVLTVGGGFISVEF 203
Query: 159 A-IYLA--------NICKKVYLIHRR-DGFRCAPITLEHAKNNDKIEFLTPYVVEEIKGD 208
A I+ A +C + +I R D +T + N I+ LT +++ +
Sbjct: 204 AGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANG--IQILTKENPAKVELN 261
Query: 209 ASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFS 268
A G S++ ++ + +LV+ + +G L+ ++ ++ K G + VD
Sbjct: 262 ADGSKSVTFESGKKMDF-DLVM----MAIGRSPRTKDLQLQNAGVMIK---NGGVQVDEY 313
Query: 269 MKTNVQGLFAAGDI 282
+TNV ++A GD+
Sbjct: 314 SRTNVSNIYAIGDV 327
>pdb|1PHH| p-Hydroxybenzoate Hydroxylase (PHBH) (E.C.1.14.13.2) - FAD -
3,4-Dihydroxybenzoate Ternary Complex
(PHBH.FAD.3,4-DiOHB Complex)
pdb|1PBE| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.13.2) Complexed
With P-Hydroxybenzoic Acid
pdb|1PDH| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.13.2)
Reconstituted With Arabino-Fad And Complexed With The
Substrate P-Hydroxybenzoic Acid
pdb|2PHH| p-Hydroxybenzoate Hydroxylase (PHBH) (E.C.1.14.13.2) -
Adenosine-5-Diphosphoribose - p-Hydroxybenzoate Ternary
Complex (PHBH-ADPR-POHB Complex)
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1JOA| Nadh Peroxidase With Cysteine-Sulfenic Acid
Length = 447
Score = 28.5 bits (62), Expect = 1.0
Identities = 42/146 (28%), Positives = 58/146 (38%), Gaps = 26/146 (17%)
Query: 146 VAVLGGGDTAVEEAIYLANICKKVYLIHRRD-------GFRCAPITLEHAKNNDKIEFLT 198
V V+G G +E A A KKV +I D + E + N+ I T
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN-ITIAT 210
Query: 199 PYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLK---QEDNSMLC 255
VE +GD ++ KN +LVV + VG N A LK + + L
Sbjct: 211 GETVERYEGDGRVQKVVTDKNA---YDADLVV----VAVGVRPNTAWLKGTLELHPNGLI 263
Query: 256 KCDEYGSIVVDFSMKTNVQGLFAAGD 281
K DEY M+T+ +FA GD
Sbjct: 264 KTDEY--------MRTSEPDVFAVGD 281
>pdb|1NHP| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Cys 42 Replaced
By Ala (C42a)
Length = 447
Score = 28.5 bits (62), Expect = 1.0
Identities = 42/146 (28%), Positives = 58/146 (38%), Gaps = 26/146 (17%)
Query: 146 VAVLGGGDTAVEEAIYLANICKKVYLIHRRD-------GFRCAPITLEHAKNNDKIEFLT 198
V V+G G +E A A KKV +I D + E + N+ I T
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN-ITIAT 210
Query: 199 PYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLK---QEDNSMLC 255
VE +GD ++ KN +LVV + VG N A LK + + L
Sbjct: 211 GETVERYEGDGRVQKVVTDKNA---YDADLVV----VAVGVRPNTAWLKGTLELHPNGLI 263
Query: 256 KCDEYGSIVVDFSMKTNVQGLFAAGD 281
K DEY M+T+ +FA GD
Sbjct: 264 KTDEY--------MRTSEPDVFAVGD 281
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1NHS| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Ser 41 Replaced
By Cys (S41c)
Length = 447
Score = 28.5 bits (62), Expect = 1.0
Identities = 42/146 (28%), Positives = 58/146 (38%), Gaps = 26/146 (17%)
Query: 146 VAVLGGGDTAVEEAIYLANICKKVYLIHRRD-------GFRCAPITLEHAKNNDKIEFLT 198
V V+G G +E A A KKV +I D + E + N+ I T
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN-ITIAT 210
Query: 199 PYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLK---QEDNSMLC 255
VE +GD ++ KN +LVV + VG N A LK + + L
Sbjct: 211 GETVERYEGDGRVQKVVTDKNA---YDADLVV----VAVGVRPNTAWLKGTLELHPNGLI 263
Query: 256 KCDEYGSIVVDFSMKTNVQGLFAAGD 281
K DEY M+T+ +FA GD
Sbjct: 264 KTDEY--------MRTSEPDVFAVGD 281
>pdb|1DOB| P-Hydroxybenzoate Hydroxylase Mutant With Tyr 222 Replaced By
Phe (Y222f) Complexed With 4-Hydroxybenzoate
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1PBD| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.13.2) Mutant With
Cys 116 Replaced By Ser (C116s) Complexed With Fad And
4-Aminobenzoic Acid
pdb|1PBB| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.13.2) Mutant With
Cys 116 Replaced By Ser (C116s) Complexed With Fad And
2,4-Dihydroxybenzoic Acid
pdb|1PBC| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.13.2) Mutant With
Cys 116 Replaced By Ser (C116s) Complexed With Fad And
2-Hydroxy-4-Aminobenzoic Acid
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1BKW|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys116
Replaced By Ser (C116s) And Arg44 Replaced By Lys
(R44k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1PBF| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.13.2) Mutant With
Cys 116 Replaced By Ser, Tyr 222 Replaced By Ala
(C116s,Y222a) Complexed With Fad And
2-Hydroxy-4-Aminobenzoic Acid
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1BGJ| P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And His 162 Replaced By Arg
(H162r), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1BF3| P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1NHQ| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Cys 42 Replaced
By Ser (C42s)
Length = 447
Score = 28.5 bits (62), Expect = 1.0
Identities = 42/146 (28%), Positives = 58/146 (38%), Gaps = 26/146 (17%)
Query: 146 VAVLGGGDTAVEEAIYLANICKKVYLIHRRD-------GFRCAPITLEHAKNNDKIEFLT 198
V V+G G +E A A KKV +I D + E + N+ I T
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN-ITIAT 210
Query: 199 PYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLK---QEDNSMLC 255
VE +GD ++ KN +LVV + VG N A LK + + L
Sbjct: 211 GETVERYEGDGRVQKVVTDKNA---YDADLVV----VAVGVRPNTAWLKGTLELHPNGLI 263
Query: 256 KCDEYGSIVVDFSMKTNVQGLFAAGD 281
K DEY M+T+ +FA GD
Sbjct: 264 KTDEY--------MRTSEPDVFAVGD 281
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-Ohb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P-Ohb
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 28.5 bits (62), Expect = 1.0
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 31/194 (15%)
Query: 102 EAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFY---KNKEVAVLGGGDTAVEE 158
E + +++A+G P I G + C + + FY + V +GGG +VE
Sbjct: 152 ETEHILLASGSWPHMPNIPG--------IEHCISSNEAFYLPEPPRRVLTVGGGFISVEF 203
Query: 159 A-IYLA--------NICKKVYLIHRR-DGFRCAPITLEHAKNNDKIEFLTPYVVEEIKGD 208
A I+ A +C + +I R D +T + N I+ LT +++ +
Sbjct: 204 AGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANG--IQILTKENPAKVELN 261
Query: 209 ASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFS 268
A G S++ ++ + +LV+ + +G L+ ++ ++ K G + VD
Sbjct: 262 ADGSKSVTFESGKKMDF-DLVM----MAIGRSPRTKDLQLQNAGVMIK---NGGVQVDEY 313
Query: 269 MKTNVQGLFAAGDI 282
+TNV ++A GD+
Sbjct: 314 SRTNVSNIYAIGDV 327
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1NHR| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Leu 40 Replaced
By Cys (L40c)
Length = 447
Score = 28.5 bits (62), Expect = 1.0
Identities = 42/146 (28%), Positives = 58/146 (38%), Gaps = 26/146 (17%)
Query: 146 VAVLGGGDTAVEEAIYLANICKKVYLIHRRD-------GFRCAPITLEHAKNNDKIEFLT 198
V V+G G +E A A KKV +I D + E + N+ I T
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN-ITIAT 210
Query: 199 PYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLK---QEDNSMLC 255
VE +GD ++ KN +LVV + VG N A LK + + L
Sbjct: 211 GETVERYEGDGRVQKVVTDKNA---YDADLVV----VAVGVRPNTAWLKGTLELHPNGLI 263
Query: 256 KCDEYGSIVVDFSMKTNVQGLFAAGD 281
K DEY M+T+ +FA GD
Sbjct: 264 KTDEY--------MRTSEPDVFAVGD 281
>pdb|1BGN| P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1PXA| P-Hydroxybenzoate Hydroxylase (E.C.1.14.13.2) Mutant With Asn
300 Replaced By Asp (N300d)
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1PXC| P-Hydroxybenzoate Hydroxylase (E.C.1.14.13.2) Mutant With Tyr
385 Replaced By Phe (Y385f)
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1PXB| P-Hydroxybenzoate Hydroxylase (E.C.1.14.13.2) Mutant With Tyr
201 Replaced By Phe (Y201f)
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1DOC| P-Hydroxybenzoate Hydroxylase Complexed With 4-Hdroxybenzoate
And Bromine
pdb|1IUT| P-Hydroxybenzoate Hydroxylase Complexed With 4-Aminobenzoate At
Ph 7.4
pdb|1IUU| P-Hydroxybenzoate Hydroxylase Complexed With 4-Aminobenzoate At
Ph 9.4
pdb|1IUW| P-Hydroxybenzoate Hydroxylase Complexed With 4-4-Hydroxybenzoate
At Ph 7.4
pdb|1IUX| P-Hydroxybenzoate Hydroxylase Complexed With 4-4-Hydroxybenzoate
At Ph 9.4
pdb|1DOD| P-Hydroxybenzoate Hydroxylase Complexed With
2,4-Dihydroxybenzoic Acid
pdb|1D7L|A Chain A, Structure-Function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-Hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-Substituted
Flavins
pdb|1IUS| P-Hydroxybenzoate Hydroxylase Complexed With 4-Aminobenzoate At
Ph 5.0
pdb|1DOE| P-Hydroxybenzoate Hydroxylase Complexed With
2,4-Dihydroxybenzoic Acid And Bromine
pdb|1IUV| P-Hydroxybenzoate Hydroxylase Complexed With 4-4-Hydroxybenzoate
At Ph 5.0
Length = 394
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 28.5 bits (62), Expect = 1.0
Identities = 42/146 (28%), Positives = 58/146 (38%), Gaps = 26/146 (17%)
Query: 146 VAVLGGGDTAVEEAIYLANICKKVYLIHRRD-------GFRCAPITLEHAKNNDKIEFLT 198
V V+G G +E A A KKV +I D + E + N+ I T
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN-ITIAT 210
Query: 199 PYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLK---QEDNSMLC 255
VE +GD ++ KN +LVV + VG N A LK + + L
Sbjct: 211 GETVERYEGDGRVQKVVTDKNA---YDADLVV----VAVGVRPNTAWLKGTLELHPNGLI 263
Query: 256 KCDEYGSIVVDFSMKTNVQGLFAAGD 281
K DEY M+T+ +FA GD
Sbjct: 264 KTDEY--------MRTSEPDVFAVGD 281
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 AIIGGGPAGLSAGLYATRGGVKNAVL 30
AIIG GP+GL G + G+ N +L
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVIL 31
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 28.5 bits (62), Expect = 1.0
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 31/194 (15%)
Query: 102 EAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFY---KNKEVAVLGGGDTAVEE 158
E + +++A+G P I G + C + + FY + V +GGG +VE
Sbjct: 151 ETEHILLASGSWPHMPNIPG--------IEHCISSNEAFYLPEPPRRVLTVGGGFISVEF 202
Query: 159 A-IYLA--------NICKKVYLIHRR-DGFRCAPITLEHAKNNDKIEFLTPYVVEEIKGD 208
A I+ A +C + +I R D +T + N I+ LT +++ +
Sbjct: 203 AGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANG--IQILTKENPAKVELN 260
Query: 209 ASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFS 268
A G S++ ++ + +LV+ + +G L+ ++ ++ K G + VD
Sbjct: 261 ADGSKSVTFESGKKMDF-DLVM----MAIGRSPRTKDLQLQNAGVMIK---NGGVQVDEY 312
Query: 269 MKTNVQGLFAAGDI 282
+TNV ++A GD+
Sbjct: 313 SRTNVSNIYAIGDV 326
>pdb|1NPX| Nadh Peroxidase (E.C.1.11.1.1) Non-Active Form With Cys 42
Oxidized To A Sulfonic Acid (Cys42-So3h)
pdb|2NPX| Nadh Peroxidase (E.C.1.11.1.1) With Cys 42 Oxidized To A Sulfonic
Acid (Cys42-So3h)
Length = 447
Score = 28.5 bits (62), Expect = 1.0
Identities = 42/146 (28%), Positives = 58/146 (38%), Gaps = 26/146 (17%)
Query: 146 VAVLGGGDTAVEEAIYLANICKKVYLIHRRD-------GFRCAPITLEHAKNNDKIEFLT 198
V V+G G +E A A KKV +I D + E + N+ I T
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN-ITIAT 210
Query: 199 PYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLK---QEDNSMLC 255
VE +GD ++ KN +LVV + VG N A LK + + L
Sbjct: 211 GETVERYEGDGRVQKVVTDKNA---YDADLVV----VAVGVRPNTAWLKGTLELHPNGLI 263
Query: 256 KCDEYGSIVVDFSMKTNVQGLFAAGD 281
K DEY M+T+ +FA GD
Sbjct: 264 KTDEY--------MRTSEPDVFAVGD 281
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
Length = 408
Score = 28.1 bits (61), Expect = 1.3
Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 30/205 (14%)
Query: 89 SHFVILAEDGKTFEAKSVIIATGGSPKR-TGIKGES--EYWGKGVSTCATCDGFFYKNKE 145
+H V L+ DG+T ++++ATG +P+ ++G + + + +
Sbjct: 89 AHTVALS-DGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSR 147
Query: 146 VAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF--RCAPITLE------HAKNNDKIEFL 197
+ ++GGG +E A V L+ + R AP TL HA + F
Sbjct: 148 LLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRF- 206
Query: 198 TPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKC 257
+ G GV L + T ++VV G +G N+A+ + C
Sbjct: 207 ----ERSVTGSVDGVVLL---DDGTRIAADMVVVG----IGVLANDALARAAG----LAC 251
Query: 258 DEYGSIVVDFSMKTNVQGLFAAGDI 282
D+ I VD +T ++A GD+
Sbjct: 252 DD--GIFVDAYGRTTCPDVYALGDV 274
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1058
Score = 27.7 bits (60), Expect = 1.8
Identities = 16/67 (23%), Positives = 28/67 (40%), Gaps = 5/67 (7%)
Query: 144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF-----RCAPITLEHAKNNDKIEFLT 198
+++ VLGGG + + I C L R DG+ C P T+ + +
Sbjct: 560 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFE 619
Query: 199 PYVVEEI 205
P +E++
Sbjct: 620 PVTLEDV 626
>pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 1073
Score = 27.7 bits (60), Expect = 1.8
Identities = 16/67 (23%), Positives = 28/67 (40%), Gaps = 5/67 (7%)
Query: 144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF-----RCAPITLEHAKNNDKIEFLT 198
+++ VLGGG + + I C L R DG+ C P T+ + +
Sbjct: 560 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFE 619
Query: 199 PYVVEEI 205
P +E++
Sbjct: 620 PVTLEDV 626
>pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
Length = 1073
Score = 27.7 bits (60), Expect = 1.8
Identities = 16/67 (23%), Positives = 28/67 (40%), Gaps = 5/67 (7%)
Query: 144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF-----RCAPITLEHAKNNDKIEFLT 198
+++ VLGGG + + I C L R DG+ C P T+ + +
Sbjct: 560 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFE 619
Query: 199 PYVVEEI 205
P +E++
Sbjct: 620 PVTLEDV 626
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
Length = 415
Score = 27.3 bits (59), Expect = 2.3
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 108 IATGGSPKRTGIKGESEYWGKGVSTCATCD----GFFYKNKEVAVLGGGDTAVEEAIYLA 163
I TG + G KG E G+GV CA G K VAV G G+ A+ ++
Sbjct: 170 IVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLIS 229
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 27.3 bits (59), Expect = 2.3
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 108 IATGGSPKRTGIKGESEYWGKGVSTCATCD----GFFYKNKEVAVLGGGDTAVEEAIYLA 163
I TG + G KG E G+GV CA G K VAV G G+ A+ ++
Sbjct: 171 IVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLIS 230
>pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
Length = 498
Score = 27.3 bits (59), Expect = 2.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 6 IIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQI 40
I+G G AGLSA G + VL PGG++
Sbjct: 38 IVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV 72
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 27.3 bits (59), Expect = 2.3
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 108 IATGGSPKRTGIKGESEYWGKGVSTCATCD----GFFYKNKEVAVLGGGDTAVEEAIYLA 163
I TG + G KG E G+GV CA G K VAV G G+ A+ ++
Sbjct: 170 IVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLIS 229
>pdb|3LAD|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)
pdb|3LAD|B Chain B, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)
Length = 476
Score = 26.9 bits (58), Expect = 3.0
Identities = 69/321 (21%), Positives = 119/321 (36%), Gaps = 47/321 (14%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFE-KGMPGGQITGSSEI--------------- 46
D +IG GP G A + + + G+K A++ + KG G G + +
Sbjct: 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSY 64
Query: 47 ---ENYPGVK-------EVVSGLDFMQPWQEQCFR--FGLKHEMTAVQRVSKKDSHFVIL 94
E + K EV + M ++Q R G + V+ + H +L
Sbjct: 65 KFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL 124
Query: 95 --------AEDG--KTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNK 144
A DG + + ++VI+A+G P I V + D F
Sbjct: 125 AGKKVEVTAADGSSQVLDTENVILASGSKP--VEIPPAPVDQDVIVDSTGALD-FQNVPG 181
Query: 145 EVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNDKI---EFLTPYV 201
++ V+G G +E A + +V ++ D F A + + AK KI + L +
Sbjct: 182 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTKQGLKILL 240
Query: 202 VEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYG 261
+ G +++K ++ + VG L D+ + DE G
Sbjct: 241 GARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGV--TLDERG 298
Query: 262 SIVVDFSMKTNVQGLFAAGDI 282
I VD T+V G++A GD+
Sbjct: 299 FIYVDDYCATSVPGVYAIGDV 319
>pdb|1KRE|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KKT|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
Length = 511
Score = 26.6 bits (57), Expect = 3.9
Identities = 15/46 (32%), Positives = 19/46 (40%)
Query: 131 STCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRD 176
STC T GF + GG +E+ A + K YL H D
Sbjct: 439 STCRTDSGFAAVSDVNKANGGSKYDNQESFLFAEVMKYSYLAHSED 484
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 26.2 bits (56), Expect = 5.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 6 IIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSSEIENYPGVKE 54
++G G AG +A L A + G N +L +K GG S+ N G K+
Sbjct: 126 VVGAGSAGFNASLAAKKAGA-NVILVDKAPFSGGNSMISAGGMNAVGTKQ 174
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
Length = 520
Score = 25.4 bits (54), Expect = 8.7
Identities = 19/69 (27%), Positives = 32/69 (45%), Gaps = 4/69 (5%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFM 62
D ++GGG +G++A G+ VL + GG+ + + N VK V G ++
Sbjct: 6 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR---TYTLRNQK-VKYVDLGGSYV 61
Query: 63 QPWQEQCFR 71
P Q + R
Sbjct: 62 GPTQNRILR 70
>pdb|1QLA|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLA|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 25.4 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVL 30
D +IGGG AGL A + + G+ VL
Sbjct: 7 DSLVIGGGLAGLRAAVATQQKGLSTIVL 34
>pdb|1KNR|A Chain A, L-Aspartate Oxidase: R386l Mutant
pdb|1KNP|A Chain A, E. Coli L-Aspartate Oxidase: Mutant R386l In Complex With
Succinate
Length = 540
Score = 25.4 bits (54), Expect = 8.7
Identities = 9/22 (40%), Positives = 17/22 (76%)
Query: 261 GSIVVDFSMKTNVQGLFAAGDI 282
G ++VD +T+V+GL+A G++
Sbjct: 355 GGVMVDDHGRTDVEGLYAIGEV 376
>pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 655
Score = 25.4 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVL 30
D +IGGG AGL A + + G+ VL
Sbjct: 7 DSLVIGGGLAGLRAAVATQQKGLSTIVL 34
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 25.4 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVL 30
D +IGGG AGL A + + G+ VL
Sbjct: 7 DSLVIGGGLAGLRAAVATQQKGLSTIVL 34
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 25.4 bits (54), Expect = 8.7
Identities = 9/22 (40%), Positives = 17/22 (76%)
Query: 261 GSIVVDFSMKTNVQGLFAAGDI 282
G ++VD +T+V+GL+A G++
Sbjct: 355 GGVMVDDHGRTDVEGLYAIGEV 376
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,882,259
Number of Sequences: 13198
Number of extensions: 80249
Number of successful extensions: 412
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 125
length of query: 311
length of database: 2,899,336
effective HSP length: 88
effective length of query: 223
effective length of database: 1,737,912
effective search space: 387554376
effective search space used: 387554376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)