BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645445|ref|NP_207619.1| lipooligosaccharide 5G8
epitope biosynthesis-associated protein (lex2B) [Helicobacter pylori
26695]
(273 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FVA|B Chain B, Crystal Structure Of Bovine Methionine ... 28 0.86
pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Met... 28 0.86
pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Baci... 26 4.3
pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Baci... 26 4.3
pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductas... 26 5.6
pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 ... 26 5.6
pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 ... 26 5.6
>pdb|1FVA|B Chain B, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
Length = 217
Score = 28.5 bits (62), Expect = 0.86
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 35 HQAQIFDAIYSKTFEGGLHPLVKKHLHPYFITQNIKDMGITTNLISEVSKFYYALKYHAK 94
H +Q AIY + E L K + ++++ G+ T I E FYYA YH +
Sbjct: 139 HGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEH--GFGLITTDIREGQTFYYAEDYHQQ 196
Query: 95 FMS 97
++S
Sbjct: 197 YLS 199
>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide
Reductase
Length = 199
Score = 28.5 bits (62), Expect = 0.86
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 35 HQAQIFDAIYSKTFEGGLHPLVKKHLHPYFITQNIKDMGITTNLISEVSKFYYALKYHAK 94
H +Q AIY + E L K + ++++ G+ T I E FYYA YH +
Sbjct: 131 HGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEH--GFGLITTDIREGQTFYYAEDYHQQ 188
Query: 95 FMS 97
++S
Sbjct: 189 YLS 191
>pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
pdb|1KQP|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
Length = 271
Score = 26.2 bits (56), Expect = 4.3
Identities = 10/31 (32%), Positives = 18/31 (57%)
Query: 165 EPLSHKNHEIQERVGIIKAYSEGVGTQGYVI 195
+P EI++RV +K Y + G +G+V+
Sbjct: 13 KPSIDPKQEIEDRVNFLKQYVKKTGAKGFVL 43
>pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|2NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|2NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|1NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1EE1|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IH8|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1EE1|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IFX|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IFX|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
Length = 271
Score = 26.2 bits (56), Expect = 4.3
Identities = 10/31 (32%), Positives = 18/31 (57%)
Query: 165 EPLSHKNHEIQERVGIIKAYSEGVGTQGYVI 195
+P EI++RV +K Y + G +G+V+
Sbjct: 13 KPSIDPKQEIEDRVNFLKQYVKKTGAKGFVL 43
>pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
Length = 340
Score = 25.8 bits (55), Expect = 5.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 215 DTIMDATFIHGVKNLVLQPFVIADD----EQISTIARKEEPYSPKIALM 259
+TI +F H ++N+V P V+ DD EQI A Y ++ M
Sbjct: 115 ETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEM 163
>pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
Length = 375
Score = 25.8 bits (55), Expect = 5.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 215 DTIMDATFIHGVKNLVLQPFVIADD----EQISTIARKEEPYSPKIALM 259
+TI +F H ++N+V P V+ DD EQI A Y ++ M
Sbjct: 115 ETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEM 163
>pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
Length = 375
Score = 25.8 bits (55), Expect = 5.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 215 DTIMDATFIHGVKNLVLQPFVIADD----EQISTIARKEEPYSPKIALM 259
+TI +F H ++N+V P V+ DD EQI A Y ++ M
Sbjct: 115 ETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEM 163
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.139 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,568,996
Number of Sequences: 13198
Number of extensions: 61946
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 7
length of query: 273
length of database: 2,899,336
effective HSP length: 87
effective length of query: 186
effective length of database: 1,751,110
effective search space: 325706460
effective search space used: 325706460
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)