BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645446|ref|NP_207620.1| ss-DNA binding protein
12RNP2 precursor [Helicobacter pylori 26695]
(82 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2MSS|A Chain A, Musashi1 Rbd2, Nmr >gi|8569493|pdb|2MST... 55 1e-09
pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 An... 45 1e-06
pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX >gi|49298... 45 1e-06
pdb|1SXL| Sex-Lethal Protein (C-Terminus, Or Second Rna-B... 45 1e-06
pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich El... 45 2e-06
pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Bin... 44 2e-06
pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Bind... 43 5e-06
pdb|1D9A|A Chain A, Solution Structure Of The Second Rna-Bi... 43 7e-06
pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rn... 42 9e-06
pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein... 42 1e-05
pdb|1UP1| Up1, The Two Rna-Recognition Motif Domain Of Hn... 41 2e-05
pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex 41 2e-05
pdb|1HA1| Hnrnp A1 (Rbd1,2) From Homo Sapiens 41 2e-05
pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Doma... 41 2e-05
pdb|1H6K|Z Chain Z, Nuclear Cap Binding Complex >gi|2015122... 39 8e-05
pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-... 39 8e-05
pdb|2U2F|A Chain A, Solution Structure Of The Second Rna-Bi... 38 2e-04
pdb|1U2F|A Chain A, Solution Structure Of The First Rna-Bin... 28 0.14
pdb|1JQE|A Chain A, Crystal Structure Analysis Of Human His... 25 2.0
pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermoto... 24 3.3
pdb|1EFV|A Chain A, Three-Dimensional Structure Of Human El... 24 3.3
pdb|2XIN|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Mutant... 23 4.4
pdb|1BHW|A Chain A, Low Temperature Middle Resolution Struc... 23 4.4
pdb|9XIM|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Mutant... 23 4.4
pdb|1ACC| Anthrax Protective Antigen 23 4.4
pdb|1XIM|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Comple... 23 4.4
pdb|2XIM|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Mutant... 23 4.4
pdb|5XIN|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Mutant... 23 4.4
pdb|3XIM|D Chain D, D-Xylose Isomerase (E.C.5.3.1.5) Mutant... 23 4.4
pdb|3XIN|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Mutant... 23 4.4
pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lac... 23 7.5
>pdb|2MSS|A Chain A, Musashi1 Rbd2, Nmr
pdb|2MST|A Chain A, Musashi1 Rbd2, Nmr
Length = 75
Score = 55.5 bits (132), Expect = 1e-09
Identities = 25/74 (33%), Positives = 42/74 (55%)
Query: 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLD 63
I+VG L + T E VK F QFGKV + L++D+ T + +GFGFV + E + E + ++
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 61
Query: 64 NTDFMGRTIRVTEA 77
+ + + +A
Sbjct: 62 FHEINNKMVECKKA 75
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 45.1 bits (105), Expect = 1e-06
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEM-QEESVSEAIAK 61
N+YV NL + T +Q+ +F ++G + ++ D+ T +P+G FV + E EAI+
Sbjct: 102 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 161
Query: 62 LDN 64
L+N
Sbjct: 162 LNN 164
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 45.1 bits (105), Expect = 1e-06
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEM-QEESVSEAIAK 61
N+YV NL + T +Q+ +F ++G + ++ D+ T +P+G FV + E EAI+
Sbjct: 91 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 150
Query: 62 LDN 64
L+N
Sbjct: 151 LNN 153
>pdb|1SXL| Sex-Lethal Protein (C-Terminus, Or Second Rna-Binding Domain
(Rbd-2), Residues 199 - 294 Plus N-Terminal Met) (Nmr,
17 Structures)
Length = 97
Score = 45.1 bits (105), Expect = 1e-06
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEM-QEESVSEAIAK 61
N+YV NL + T +Q+ +F ++G + ++ D+ T +P+G FV + E EAI+
Sbjct: 15 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 74
Query: 62 LDN 64
L+N
Sbjct: 75 LNN 77
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 44.7 bits (104), Expect = 2e-06
Identities = 22/74 (29%), Positives = 41/74 (54%), Gaps = 1/74 (1%)
Query: 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEE-SVSEAIAK 61
N+YV L + T +++++LFSQ+G++ +++ D+ T +G GF+ + EAI
Sbjct: 90 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149
Query: 62 LDNTDFMGRTIRVT 75
L+ G T +T
Sbjct: 150 LNGQKPSGATEPIT 163
Score = 44.7 bits (104), Expect = 2e-06
Identities = 24/81 (29%), Positives = 43/81 (52%), Gaps = 1/81 (1%)
Query: 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVE-MQEESVSEAIAK 61
N+ V L + T E+ + LF G++ + KL+ D+ T + G+GFV + + +AI
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 62 LDNTDFMGRTIRVTEANPKKS 82
L+ +TI+V+ A P +
Sbjct: 64 LNGLRLQTKTIKVSYARPSSA 84
>pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Binding Domain
(Rbd1) Of Hu Antigen C (Huc)
Length = 89
Score = 44.3 bits (103), Expect = 2e-06
Identities = 24/81 (29%), Positives = 41/81 (49%), Gaps = 1/81 (1%)
Query: 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE-ESVSEAIAK 61
N+ V L + T ++ K LF G + + KL+ D+ T + G+GFV + +AI
Sbjct: 6 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 65
Query: 62 LDNTDFMGRTIRVTEANPKKS 82
L+ +TI+V+ A P +
Sbjct: 66 LNGLKLQTKTIKVSYARPSSA 86
>pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|X Chain X, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|Y Chain Y, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2V|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 156
Score = 43.1 bits (100), Expect = 5e-06
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSE-AIAKL 62
+YVGNL + T EQ+ ELFS+ G + + + D+ K GF FVE + +E A+ +
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
Query: 63 DNTDFMGRTIR 73
+ T R IR
Sbjct: 102 NGTRLDDRIIR 112
>pdb|1D9A|A Chain A, Solution Structure Of The Second Rna-Binding Domain
(Rbd2) Of Hu Antigen C (Huc)
Length = 85
Score = 42.7 bits (99), Expect = 7e-06
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEE-SVSEAIAK 61
N+YV L + + +++++LFSQ+G++ +++ D+ T +G GF+ + EAI
Sbjct: 3 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKG 62
Query: 62 LDNTDFMGRTIRVT 75
L+ +G +T
Sbjct: 63 LNGQKPLGAAEPIT 76
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain
Of Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 42.4 bits (98), Expect = 9e-06
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEE 53
I+VG L E+++E F FG+V +++L D +T K +GF F+ +EE
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEE 51
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 42.0 bits (97), Expect = 1e-05
Identities = 21/57 (36%), Positives = 36/57 (62%), Gaps = 1/57 (1%)
Query: 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE-ESVSEAI 59
+++G L + T + +K+ FS+FG+V + L D T + +GFGFV +E ESV + +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 58
>pdb|1UP1| Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 41.2 bits (95), Expect = 2e-05
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFV 48
+R +++G L + T E ++ F Q+G + + ++ D TK+ +GFGFV
Sbjct: 11 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 58
Score = 38.1 bits (87), Expect = 2e-04
Identities = 17/66 (25%), Positives = 38/66 (56%), Gaps = 1/66 (1%)
Query: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE-ESVSEAI 59
++ I+VG + +++ F Q+GK+ ++++ DR + K +GF FV + +SV + +
Sbjct: 102 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 161
Query: 60 AKLDNT 65
+ +T
Sbjct: 162 IQKYHT 167
>pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
Length = 183
Score = 41.2 bits (95), Expect = 2e-05
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFV 48
+R +++G L + T E ++ F Q+G + + ++ D TK+ +GFGFV
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 53
Score = 38.1 bits (87), Expect = 2e-04
Identities = 17/66 (25%), Positives = 38/66 (56%), Gaps = 1/66 (1%)
Query: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE-ESVSEAI 59
++ I+VG + +++ F Q+GK+ ++++ DR + K +GF FV + +SV + +
Sbjct: 97 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 156
Query: 60 AKLDNT 65
+ +T
Sbjct: 157 IQKYHT 162
>pdb|1HA1| Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 41.2 bits (95), Expect = 2e-05
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFV 48
+R +++G L + T E ++ F Q+G + + ++ D TK+ +GFGFV
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Score = 38.1 bits (87), Expect = 2e-04
Identities = 17/66 (25%), Positives = 38/66 (56%), Gaps = 1/66 (1%)
Query: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE-ESVSEAI 59
++ I+VG + +++ F Q+GK+ ++++ DR + K +GF FV + +SV + +
Sbjct: 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Query: 60 AKLDNT 65
+ +T
Sbjct: 164 IQKYHT 169
>pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 196
Score = 41.2 bits (95), Expect = 2e-05
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFV 48
+R +++G L + T E ++ F Q+G + + ++ D TK+ +GFGFV
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Score = 38.1 bits (87), Expect = 2e-04
Identities = 17/66 (25%), Positives = 38/66 (56%), Gaps = 1/66 (1%)
Query: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE-ESVSEAI 59
++ I+VG + +++ F Q+GK+ ++++ DR + K +GF FV + +SV + +
Sbjct: 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Query: 60 AKLDNT 65
+ +T
Sbjct: 164 IQKYHT 169
>pdb|1H6K|Z Chain Z, Nuclear Cap Binding Complex
pdb|1H6K|X Chain X, Nuclear Cap Binding Complex
pdb|1H6K|Y Chain Y, Nuclear Cap Binding Complex
Length = 98
Score = 39.3 bits (90), Expect = 8e-05
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSE-AIAKL 62
+YVGNL + T EQ+ ELFS+ G + + + D+ K GF FVE + +E A+ +
Sbjct: 21 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK-MKTACGFCFVEYYSRADAENAMRYI 79
Query: 63 DNTDFMGRTIR 73
+ T R IR
Sbjct: 80 NGTRLDDRIIR 90
>pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein
In Complex With Polyadenylate Rna
Length = 190
Score = 39.3 bits (90), Expect = 8e-05
Identities = 20/75 (26%), Positives = 40/75 (52%), Gaps = 1/75 (1%)
Query: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIA 60
M ++YVG+L T + E FS G + ++++ D T++ G+ +V Q+ + +E
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 61 KLDNTDFM-GRTIRV 74
N D + G+ +R+
Sbjct: 70 DTMNFDVIKGKPVRI 84
Score = 38.9 bits (89), Expect = 1e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQ-EESVSEAIAK 61
NI++ NL S ++ + + FS FG + + K++ D KG+GFV + +E+ AI K
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIEK 157
Query: 62 L------DNTDFMGR 70
+ D F+GR
Sbjct: 158 MNGMLLNDRKVFVGR 172
>pdb|2U2F|A Chain A, Solution Structure Of The Second Rna-Binding Domain Of
Hu2af65
Length = 85
Score = 38.1 bits (87), Expect = 2e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVS-EAIAKL 62
+++G L +QVKEL + FG + L+ D T KG+ F E + +V+ +AIA L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 63 DNTDFMGRTIRVTEAN 78
+ + + V A+
Sbjct: 64 NGMQLGDKKLLVQRAS 79
>pdb|1U2F|A Chain A, Solution Structure Of The First Rna-Binding Domain Of
Hu2af65
Length = 90
Score = 28.5 bits (62), Expect = 0.14
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNV-----KLIYDRETKKPKGFGFVEMQEESVS 56
R +YVGN+ + T E + + F+ ++ + + + + K F F+E + +
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 57 EAIAKLDNTDFMGRTIRV 74
D F G+++++
Sbjct: 62 TQAMAFDGIIFQGQSLKI 79
>pdb|1JQE|A Chain A, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Ile105 Polymorphic Variant) Complexed
With Adohcy And Antimalarial Drug Quinacrine
pdb|1JQE|B Chain B, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Ile105 Polymorphic Variant) Complexed
With Adohcy And Antimalarial Drug Quinacrine
Length = 292
Score = 24.6 bits (52), Expect = 2.0
Identities = 14/52 (26%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Query: 4 IYVGNLVYSATSEQV---KELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE 52
+ + N V ++EQ+ KEL ++ + NVK + +ET +E +E
Sbjct: 81 VCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 132
>pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima
Length = 344
Score = 23.9 bits (50), Expect = 3.3
Identities = 11/29 (37%), Positives = 17/29 (57%)
Query: 25 FGKVFNVKLIYDRETKKPKGFGFVEMQEE 53
FG NV+++ DR T K + +E+ EE
Sbjct: 39 FGNSKNVEVVIDRNTGNIKVYQLLEVVEE 67
>pdb|1EFV|A Chain A, Three-Dimensional Structure Of Human Electron Transfer
Flavoprotein To 2.1 A Resolution
Length = 315
Score = 23.9 bits (50), Expect = 3.3
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQ-EESVSEAI 59
+R IY GN + + ++ ++FS G F+ K ++ E + + +
Sbjct: 127 VRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTSPVEISEWLDQKL 186
Query: 60 AKLDNTDFMGRTIRVTEANPKKS 82
K D + G + V+ KS
Sbjct: 187 TKSDRPELTGAKVVVSGGRGLKS 209
>pdb|2XIN|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With His 290
Replaced By Asn (H290N) Complex With Sorbitol And Co
pdb|2XIN|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With His 290
Replaced By Asn (H290N) Complex With Sorbitol And Co
pdb|2XIN|C Chain C, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With His 290
Replaced By Asn (H290N) Complex With Sorbitol And Co
pdb|2XIN|D Chain D, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With His 290
Replaced By Asn (H290N) Complex With Sorbitol And Co
Length = 393
Score = 23.5 bits (49), Expect = 4.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 35 YDRETKKPKGFGFVEMQEESVSEAI 59
YD + KGFGFV++ + ++ +
Sbjct: 366 YDADAVGAKGFGFVKLNQLAIEHLL 390
>pdb|1BHW|A Chain A, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
pdb|1BHW|B Chain B, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
pdb|1BHW|C Chain C, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
pdb|1BHW|D Chain D, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
pdb|1XIN|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With His 220
Replaced By Asn (H220N) Complex With Xylose And Mg
pdb|1XIN|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With His 220
Replaced By Asn (H220N) Complex With Xylose And Mg
pdb|1XIN|C Chain C, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With His 220
Replaced By Asn (H220N) Complex With Xylose And Mg
pdb|1XIN|D Chain D, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With His 220
Replaced By Asn (H220N) Complex With Xylose And Mg
Length = 393
Score = 23.5 bits (49), Expect = 4.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 35 YDRETKKPKGFGFVEMQEESVSEAI 59
YD + KGFGFV++ + ++ +
Sbjct: 366 YDADAVGAKGFGFVKLNQLAIEHLL 390
>pdb|9XIM|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu 186
Replaced By Gln (E186Q) Complex With Xylose And Mn
pdb|9XIM|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu 186
Replaced By Gln (E186Q) Complex With Xylose And Mn
pdb|8XIM|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu 186
Replaced By Gln (E186Q) Complex With Xylose And Mg
pdb|8XIM|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu 186
Replaced By Gln (E186Q) Complex With Xylose And Mg
pdb|9XIM|C Chain C, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu 186
Replaced By Gln (E186Q) Complex With Xylose And Mn
pdb|8XIM|C Chain C, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu 186
Replaced By Gln (E186Q) Complex With Xylose And Mg
pdb|9XIM|D Chain D, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu 186
Replaced By Gln (E186Q) Complex With Xylose And Mn
pdb|8XIM|D Chain D, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu 186
Replaced By Gln (E186Q) Complex With Xylose And Mg
Length = 393
Score = 23.5 bits (49), Expect = 4.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 35 YDRETKKPKGFGFVEMQEESVSEAI 59
YD + KGFGFV++ + ++ +
Sbjct: 366 YDADAVGAKGFGFVKLNQLAIEHLL 390
>pdb|1ACC| Anthrax Protective Antigen
Length = 735
Score = 23.5 bits (49), Expect = 4.4
Identities = 8/22 (36%), Positives = 13/22 (58%)
Query: 26 GKVFNVKLIYDRETKKPKGFGF 47
G+++ +K+ Y RE KG F
Sbjct: 111 GRLYQIKIQYQRENPTEKGLDF 132
>pdb|1XIM|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Xylitol-Co
pdb|1XIM|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Xylitol-Co
pdb|1XIM|C Chain C, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Xylitol-Co
pdb|1XIM|D Chain D, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Xylitol-Co
pdb|6XIM|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Xylose And
Mg
pdb|6XIM|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Xylose And
Mg
pdb|6XIM|C Chain C, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Xylose And
Mg
pdb|6XIM|D Chain D, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Xylose And
Mg
pdb|5XIM|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Sorbitol And
Mg
pdb|5XIM|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Sorbitol And
Mg
pdb|5XIM|C Chain C, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Sorbitol And
Mg
pdb|5XIM|D Chain D, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Sorbitol And
Mg
pdb|7XIM|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Demetallized At pH 5 And
In The Presence Of EDTA
pdb|7XIM|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Demetallized At pH 5 And
In The Presence Of EDTA
pdb|7XIM|C Chain C, D-Xylose Isomerase (E.C.5.3.1.5) Demetallized At pH 5 And
In The Presence Of EDTA
pdb|7XIM|D Chain D, D-Xylose Isomerase (E.C.5.3.1.5) Demetallized At pH 5 And
In The Presence Of EDTA
pdb|4XIM|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Co
pdb|4XIM|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Co
pdb|4XIM|D Chain D, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Co
pdb|4XIM|C Chain C, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Co
Length = 393
Score = 23.5 bits (49), Expect = 4.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 35 YDRETKKPKGFGFVEMQEESVSEAI 59
YD + KGFGFV++ + ++ +
Sbjct: 366 YDADAVGAKGFGFVKLNQLAIEHLL 390
>pdb|2XIM|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Lys 253
Replaced By Arg (K253R) Complex With Xylitol-Mg
pdb|2XIM|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Lys 253
Replaced By Arg (K253R) Complex With Xylitol-Mg
pdb|2XIM|C Chain C, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Lys 253
Replaced By Arg (K253R) Complex With Xylitol-Mg
pdb|2XIM|D Chain D, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Lys 253
Replaced By Arg (K253R) Complex With Xylitol-Mg
Length = 393
Score = 23.5 bits (49), Expect = 4.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 35 YDRETKKPKGFGFVEMQEESVSEAI 59
YD + KGFGFV++ + ++ +
Sbjct: 366 YDADAVGAKGFGFVKLNQLAIEHLL 390
>pdb|5XIN|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Asp 255
Replaced By Ala (D255A) Complex With Xylose And Mg
pdb|5XIN|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Asp 255
Replaced By Ala (D255A) Complex With Xylose And Mg
pdb|5XIN|C Chain C, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Asp 255
Replaced By Ala (D255A) Complex With Xylose And Mg
pdb|5XIN|D Chain D, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Asp 255
Replaced By Ala (D255A) Complex With Xylose And Mg
Length = 393
Score = 23.5 bits (49), Expect = 4.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 35 YDRETKKPKGFGFVEMQEESVSEAI 59
YD + KGFGFV++ + ++ +
Sbjct: 366 YDADAVGAKGFGFVKLNQLAIEHLL 390
>pdb|3XIM|D Chain D, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Lys 309
Replaced By Arg, Lys 319 Replaced By Arg, Lys 323
Replaced By Arg ((K309r, K319r, K323r) Complex With
Sorbitol-Co
pdb|3XIM|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Lys 309
Replaced By Arg, Lys 319 Replaced By Arg, Lys 323
Replaced By Arg ((K309r, K319r, K323r) Complex With
Sorbitol-Co
pdb|3XIM|C Chain C, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Lys 309
Replaced By Arg, Lys 319 Replaced By Arg, Lys 323
Replaced By Arg ((K309r, K319r, K323r) Complex With
Sorbitol-Co
pdb|3XIM|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Lys 309
Replaced By Arg, Lys 319 Replaced By Arg, Lys 323
Replaced By Arg ((K309r, K319r, K323r) Complex With
Sorbitol-Co
Length = 393
Score = 23.5 bits (49), Expect = 4.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 35 YDRETKKPKGFGFVEMQEESVSEAI 59
YD + KGFGFV++ + ++ +
Sbjct: 366 YDADAVGAKGFGFVKLNQLAIEHLL 390
>pdb|3XIN|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu 181
Replaced By Gln (E181Q) Soaked In Xylose And Mg
pdb|3XIN|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu 181
Replaced By Gln (E181Q) Soaked In Xylose And Mg
pdb|3XIN|C Chain C, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu 181
Replaced By Gln (E181Q) Soaked In Xylose And Mg
pdb|3XIN|D Chain D, D-Xylose Isomerase (E.C.5.3.1.5) Mutant With Glu 181
Replaced By Gln (E181Q) Soaked In Xylose And Mg
Length = 393
Score = 23.5 bits (49), Expect = 4.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 35 YDRETKKPKGFGFVEMQEESVSEAI 59
YD + KGFGFV++ + ++ +
Sbjct: 366 YDADAVGAKGFGFVKLNQLAIEHLL 390
>pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|2DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|1DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|1DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Length = 311
Score = 22.7 bits (47), Expect = 7.5
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 11 YSATSEQVKELFSQFGKVFNVKL 33
+ AT + +KE+F+ F K VKL
Sbjct: 143 FEATEKLLKEVFTFFTKPLGVKL 165
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.132 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,772
Number of Sequences: 13198
Number of extensions: 13729
Number of successful extensions: 60
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 37
length of query: 82
length of database: 2,899,336
effective HSP length: 58
effective length of query: 24
effective length of database: 2,133,852
effective search space: 51212448
effective search space used: 51212448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)