BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645448|ref|NP_207622.1| inosine-5*-monophosphate
dehydrogenase (guaB) [Helicobacter pylori 26695]
(481 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Im... 515 e-147
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosin... 315 7e-87
pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosph... 312 5e-86
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of B... 300 2e-82
pdb|1AK5| Inosine Monophosphate Dehydrogenase (Impdh) Fro... 225 7e-60
pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant O... 45 1e-05
pdb|1GOX| Glycolate Oxidase (E.C.1.1.3.1) 40 4e-04
pdb|1GYL|A Chain A, Glycolate Oxidase (E.C.1.1.3.15) Mutant... 40 4e-04
pdb|1AL7| Three-Dimensional Structures Of Glycolate Oxida... 40 4e-04
pdb|1LTD|A Chain A, Flavocytochrome B2 (E.C.1.1.2.3) Comple... 35 0.024
pdb|1LCO|A Chain A, Mol_id: 1; Molecule: L-Lactate Dehydrog... 35 0.024
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombina... 35 0.024
pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombina... 35 0.024
pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant >g... 35 0.024
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis... 34 0.041
pdb|1H5Y|A Chain A, Hisf Protein From Pyrobaculum Aerophilu... 34 0.041
pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom R... 31 0.27
pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate... 31 0.35
pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate... 31 0.35
pdb|1DBP| D-Ribose-Binding Protein Mutant With Gly 72 Rep... 29 1.0
pdb|1JJY|A Chain A, Crystal Structure Of A Ni-Containing Ca... 28 2.3
pdb|1KYH|A Chain A, Structural Genomics, Hypothetical Prote... 28 3.0
pdb|1LLW|A Chain A, Structural Studies On The Synchronizati... 28 3.0
pdb|1EYE|A Chain A, 1.7 Angstrom Resolution Crystal Structu... 27 3.9
pdb|1G8M|A Chain A, Crystal Structure Of Avian Atic, A Bifu... 27 3.9
pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lac... 27 5.1
pdb|1BRW|B Chain B, The Crystal Structure Of Pyrimidine Nuc... 27 5.1
pdb|1E6V|C Chain C, Methyl-Coenzyme M Reductase From Methan... 27 5.1
pdb|1QAP|A Chain A, Quinolinic Acid Phosphoribosyltransfera... 27 5.1
pdb|2DRI| D-Ribose-Binding Protein Complexed With Beta-D-... 27 6.6
pdb|1BA2|A Chain A, D67r Mutant Of D-Ribose-Binding Protein... 27 6.6
pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys ... 27 6.6
pdb|1EZW|A Chain A, Structure Of Coenzyme F420 Dependent Te... 26 8.6
pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulator... 26 8.6
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 515 bits (1326), Expect = e-147
Identities = 263/484 (54%), Positives = 347/484 (71%), Gaps = 6/484 (1%)
Query: 2 RILQRALTFEDVLMVPRKSSVLPKDVSLKSRLTKNIRLNIPFISAAMDTVTEHKTAIAMA 61
+ L++ TF+DVL++P +S VLP +V LK++L N+ LNIP I+AA DTVT K AIA+A
Sbjct: 6 KFLKKGYTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAXDTVTGSKXAIAIA 65
Query: 62 RLGGIGIVHKNMDIQTQVKEITKVKKSESGVINDPIFIHAHRTLADAKVITDNYKISGVP 121
R GG+G++HKN I Q +E+ KVK+SE+GVI DP F+ +++A+ + Y+ISGVP
Sbjct: 66 RAGGLGVIHKNXSITEQAEEVRKVKRSENGVIIDPFFLTPEHKVSEAEELXQRYRISGVP 125
Query: 122 VVDDKG--LLIGILTNRDVRFETDLSKKVGDVMTKMPLVTAHVGISLDEASDLMHKHKIE 179
+V+ L+GI+TNRD RF +D + + + T LVTA VG L+ A ++H+H+IE
Sbjct: 126 IVETLANRKLVGIITNRDXRFISDYNAPISEHXTSEHLVTAAVGTDLETAERILHEHRIE 185
Query: 180 KLPIVDKDNVLKGLITIKDIQKRIEYPEANKDDFGRLRVGAAIGVGQ--LDRAEMLVKAG 237
KLP+VD L GLITIKDI+K IE+P A KD+FGRL V AA+GV +RAE L +AG
Sbjct: 186 KLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFEAG 245
Query: 238 VDALVLDSAHGHSANILHTLEEIKKSLVV-DVIVGNVVTKEATSDLISAGADAIKVGIGP 296
DA+V+D+AHGHSA +L + EI+ +I GN+ T E L AG D +KVGIGP
Sbjct: 246 ADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGP 305
Query: 297 GSICTTRIVAGVGMPQVSAIDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIG 356
GSICTTR+VAGVG+PQV+AI + VA ++ +IADGGI+YSGD+ KALA G ++V +G
Sbjct: 306 GSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVXLG 365
Query: 357 SLLAGTEESPGDFMIYQGRQYKSYRGMGSIGAMTKGSSDRYFQEGV-ASEKLVPEGIEGR 415
S AGT+E+PG+ IYQGR+YK+YRG GSI A KGSSDRYFQ V + KLVPEGIEGR
Sbjct: 366 SXFAGTDEAPGETEIYQGRKYKTYRGXGSIAAXKKGSSDRYFQGSVNEANKLVPEGIEGR 425
Query: 416 VPYRGKVSDMIFQLVGGVRSSMGYQGAKNILELYQNAEFVEITSAGLKESHVHGVDITKE 475
V Y+G SD++FQ +GG+RS GY GA +I EL++NA+FVE + AGL ESH H V IT E
Sbjct: 426 VAYKGAASDIVFQXLGGIRSGXGYVGAGDIQELHENAQFVEXSGAGLIESHPHDVQITNE 485
Query: 476 APNY 479
APNY
Sbjct: 486 APNY 489
>pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
Length = 514
Score = 315 bits (807), Expect = 7e-87
Identities = 195/479 (40%), Positives = 282/479 (58%), Gaps = 18/479 (3%)
Query: 8 LTFEDVLMVPRKSSVLPKDVSLKSRLTKNIRLNIPFISAAMDTVTEHKTAIAMARLGGIG 67
LT+ D L++P V L S LTK I L P +S+ MDTVTE AIAMA GGIG
Sbjct: 30 LTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIG 89
Query: 68 IVHKNMDIQTQVKEITKVKKSESGVINDPIFIHAHRTLADAKVITDNYKISGVPVVDDKG 127
+H N + Q E+ KVKK E G I DP+ + + D + G+P+ D
Sbjct: 90 FIHHNCTPEFQANEVRKVKKYEQGFITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGR 149
Query: 128 L---LIGILTNRDVRF--ETDLSKKVGDVMTKMP-LVTAHVGISLDEASDLMHKHKIEKL 181
+ L+GI+++RD+ F E + + ++MTK LV A GI+L EA++++ + K KL
Sbjct: 150 MGSRLVGIISSRDIDFLKEEEHDCFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKL 209
Query: 182 PIVDKDNVLKGLITIKDIQKRIEYPEANKDDFGRLRVGAAIGVGQLD--RAEMLVKAGVD 239
PIV++D+ L +I D++K +YP A+KD +L GAAIG + D R ++L +AGVD
Sbjct: 210 PIVNEDDELVAIIARTDLKKNRDYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLAQAGVD 269
Query: 240 ALVLDSAHGHSANILHTLEEIK-KSLVVDVIVGNVVTKEATSDLISAGADAIKVGIGPGS 298
+VLDS+ G+S ++ ++ IK K + VI GNVVT +LI AG DA++VG+G GS
Sbjct: 270 VVVLDSSQGNSIFQINMIKYIKDKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGSGS 329
Query: 299 ICTTRIVAGVGMPQVSAIDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIGSL 358
IC T+ V G PQ +A+ E A +F +PVIADGGI+ G +AKALALGAS+VM+GSL
Sbjct: 330 ICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSL 389
Query: 359 LAGTEESPGDFMIYQGRQYKSYRGMGSIGAMTK--GSSDRYFQEGVASEKLVPEGIEGRV 416
LA T E+PG++ G + K YRGMGS+ AM K S +RYF E A + V +G+ G V
Sbjct: 390 LAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSE--ADKIKVAQGVSGAV 447
Query: 417 PYRGKVSDMIFQLVGGVRSSMGYQGAKNILELYQ-----NAEFVEITSAGLKESHVHGV 470
+G + + L+ G++ S GAK++ ++ +F + TS+ E VH +
Sbjct: 448 QDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSL 506
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 312 bits (800), Expect = 5e-86
Identities = 192/479 (40%), Positives = 282/479 (58%), Gaps = 18/479 (3%)
Query: 8 LTFEDVLMVPRKSSVLPKDVSLKSRLTKNIRLNIPFISAAMDTVTEHKTAIAMARLGGIG 67
LT+ D L++P V L S LTK I L P +S+ MDTVTE AIAMA GGIG
Sbjct: 30 LTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIG 89
Query: 68 IVHKNMDIQTQVKEITKVKKSESGVINDPIFIHAHRTLADAKVITDNYKISGVPVVDDKG 127
+H N + Q E+ KVKK E G I DP+ + + D + G+P+ D
Sbjct: 90 FIHHNCTPEFQANEVRKVKKYEQGFITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGR 149
Query: 128 L---LIGILTNRDVRF--ETDLSKKVGDVMTKMP-LVTAHVGISLDEASDLMHKHKIEKL 181
+ L+GI+++RD+ F E + + + ++MTK LV A GI+L EA++++ + K KL
Sbjct: 150 MGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKL 209
Query: 182 PIVDKDNVLKGLITIKDIQKRIEYPEANKDDFGRLRVGAAIGVGQLD--RAEMLVKAGVD 239
PIV++++ L +I D++K +YP A+KD +L GAAIG + D R ++L AGVD
Sbjct: 210 PIVNENDELVAIIARTDLKKNRDYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGVD 269
Query: 240 ALVLDSAHGHSANILHTLEEIKKSLV-VDVIVGNVVTKEATSDLISAGADAIKVGIGPGS 298
+VLDS+ G+S ++ ++ +K+ + VI GNVVT +LI AG DA++VG+G GS
Sbjct: 270 VVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGS 329
Query: 299 ICTTRIVAGVGMPQVSAIDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIGSL 358
IC T+ V G PQ +A+ E A +F +PVIADGGI+ G +AKALALGAS+VM+GSL
Sbjct: 330 ICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSL 389
Query: 359 LAGTEESPGDFMIYQGRQYKSYRGMGSIGAMTK--GSSDRYFQEGVASEKLVPEGIEGRV 416
LA T E+PG++ G + K YRGMGS+ AM K S +RYF E A + V +G+ G V
Sbjct: 390 LAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSE--ADKIKVAQGVSGAV 447
Query: 417 PYRGKVSDMIFQLVGGVRSSMGYQGAKNILELYQ-----NAEFVEITSAGLKESHVHGV 470
+G + + L+ G++ S GAK++ ++ +F + TS+ E VH +
Sbjct: 448 QDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSL 506
>pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'-Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'-Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 300 bits (769), Expect = 2e-82
Identities = 159/278 (57%), Positives = 206/278 (73%), Gaps = 4/278 (1%)
Query: 197 KDIQKRIEYPEANKDDFGRLRVGAAIGVG--QLDRAEMLVKAGVDALVLDSAHGHSANIL 254
K+ + + ++P A KD +LRVGAA+ + ++R E LVKA VD LV+DSAHGHS I+
Sbjct: 123 KNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRII 182
Query: 255 HTLEEIK-KSLVVDVIVGNVVTKEATSDLISAGADAIKVGIGPGSICTTRIVAGVGMPQV 313
+++IK K +D+I GN+VTKEA DLIS GAD +KVGIGPGSICTTRIVAGVG+PQ+
Sbjct: 183 ELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQI 242
Query: 314 SAIDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIGSLLAGTEESPGDFMIYQ 373
+AI + E + +I +IADGGIR+SGDV KA+A GA SVMIG+L AGT+ESP + +IY
Sbjct: 243 TAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYN 302
Query: 374 GRQYKSYRGMGSIGAMTKGSSDRYFQ-EGVASEKLVPEGIEGRVPYRGKVSDMIFQLVGG 432
G+++KSY GMGSI AM +GS RYFQ E +KLVPEGIEG VPY GK+ D++ QL GG
Sbjct: 303 GKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGG 362
Query: 433 VRSSMGYQGAKNILELYQNAEFVEITSAGLKESHVHGV 470
+ S MGY GA I +L N++FV+I+ + LKESH H V
Sbjct: 363 LMSGMGYLGAATISDLKINSKFVKISHSSLKESHPHDV 400
>pdb|1AK5| Inosine Monophosphate Dehydrogenase (Impdh) From Tritrichomonas
Foetus
Length = 503
Score = 225 bits (574), Expect = 7e-60
Identities = 168/495 (33%), Positives = 248/495 (49%), Gaps = 28/495 (5%)
Query: 9 TFEDVLMVPRKSSV--LPKDVSLKSRLTK-------NIRLNIPFISAAMDTVTEHKTAIA 59
TF + L++P S+V +P +V+L + L K I L IP +SA M +V+ K AIA
Sbjct: 11 TFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIA 70
Query: 60 MARLGGIGIVHKNMDIQTQVKEITKVKKSESGVINDPIFIHAHRTLADAKVITDNYKISG 119
+AR GGI + + I++Q + VK ++G + + +T AD I+ +
Sbjct: 71 LAREGGISFIFGSQSIESQAAMVHAVKNFKAGFVVSDSNVKPDQTFADVLAISQRTTHNT 130
Query: 120 VPVVDD---KGLLIGILTNRDVRFE-TDLSKKVGDVMTKM-PLVTAHVGISLDEASDLMH 174
V V DD G+L+G++T RD + T KV D+MT LVTAH L EA+ ++
Sbjct: 131 VAVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIW 190
Query: 175 KHKIEKLPIVDKDNVLKGLITIKDIQKRIEYPEANKDDFGRLRVGAAIGVGQL-DRAEML 233
+ K+ LPI+D D L+ ++ KD + D R VGA I +R L
Sbjct: 191 EKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNELVDSQKRYLVGAGINTRDFRERVPAL 250
Query: 234 VKAGVDALVLDSAHGHSANILHTLEEIKKSL--VVDVIVGNVVTKEATSDLISAGADAIK 291
V+AG D L +DS+ G S T+ I++ V V GN+V E L AGAD IK
Sbjct: 251 VEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIK 310
Query: 292 VGIGPGSICTTRIVAGVGMPQVSAIDNCVEVASKF------DIPVIADGGIRYSGDVAKA 345
+GIG GSIC TR G+G Q +A+ + V +K+ IPV +DGGI Y + A
Sbjct: 311 IGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLA 370
Query: 346 LALGASSVMIGSLLAGTEESPGDFMIYQGRQYKSYRGMGSIGAMTKGSSDRYFQEGVASE 405
LA+GA +M+G A EESP + G K Y G GS ++ + + + G +
Sbjct: 371 LAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGS----SRARNWQRYDLGGKQK 426
Query: 406 KLVPEGIEGRVPYRGKVSDMIFQLVGGVRSSMGYQGAKNILELYQNAEFVEITSAGLKES 465
EG++ VPY GK+ D + + V+S+M GA I +L A+ ++S + E
Sbjct: 427 LSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKAKITLVSSVSIVEG 486
Query: 466 HVHGVDITKEAPNYY 480
H V I K+ N Y
Sbjct: 487 GAHDV-IVKDRINDY 500
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-
Associated (S)-Mandelate Dehydrogenase From Pseudomonas
Putida At 2.15a Resolution
Length = 380
Score = 45.4 bits (106), Expect = 1e-05
Identities = 38/160 (23%), Positives = 73/160 (44%), Gaps = 19/160 (11%)
Query: 197 KDIQKRIEYPEANKDDFGRLRVGAAIGVGQLDRAEMLVKAGVDALVLDSAHGHSANILHT 256
+D+ R + P F L+ I +G++D+A + ++A + + +D++ A
Sbjct: 167 RDLHNRFKIPP-----FLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEA----- 216
Query: 257 LEEIKKSLVVDVIVGNVVTKEATSDLISAGADAIKVGIGPGSICTTRIVAGVGMPQVSAI 316
L ++ ++V +++ E I+ GAD + + G I S +
Sbjct: 217 LRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLDCAI---------SPM 267
Query: 317 DNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIG 356
+ + +K PV+ D G R D+ KALALGA +V++G
Sbjct: 268 EVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLG 307
>pdb|1GOX| Glycolate Oxidase (E.C.1.1.3.1)
Length = 369
Score = 40.4 bits (93), Expect = 4e-04
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 313 VSAIDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIG 356
+ A++ V+ A++ IPV DGG+R DV KALALGA+ V IG
Sbjct: 266 IMALEEVVK-AAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIG 308
>pdb|1GYL|A Chain A, Glycolate Oxidase (E.C.1.1.3.15) Mutant With Tyr 24
Replaced By Phe (Y24f)
pdb|1GYL|B Chain B, Glycolate Oxidase (E.C.1.1.3.15) Mutant With Tyr 24
Replaced By Phe (Y24f)
Length = 369
Score = 40.4 bits (93), Expect = 4e-04
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 313 VSAIDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIG 356
+ A++ V+ A++ IPV DGG+R DV KALALGA+ V IG
Sbjct: 266 IMALEEVVK-AAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIG 308
>pdb|1AL7| Three-Dimensional Structures Of Glycolate Oxidase With Bound
Active-Site Inhibitors
pdb|1AL8| Three-Dimensional Structure Of Glycolate Oxidase With Bound
Active-Site Inhibitors
Length = 359
Score = 40.4 bits (93), Expect = 4e-04
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 313 VSAIDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIG 356
+ A++ V+ A++ IPV DGG+R DV KALALGA+ V IG
Sbjct: 266 IMALEEVVK-AAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIG 308
>pdb|1LTD|A Chain A, Flavocytochrome B2 (E.C.1.1.2.3) Complexed With Sulfite
pdb|1LTD|B Chain B, Flavocytochrome B2 (E.C.1.1.2.3) Complexed With Sulfite
Length = 506
Score = 34.7 bits (78), Expect = 0.024
Identities = 31/111 (27%), Positives = 49/111 (43%), Gaps = 24/111 (21%)
Query: 257 LEEIKKSLVVDVIVGNVVTKEATSDLISAGADAIKVGIGPGSICTTRIVAGVGMPQVSAI 316
+EE+KK + +++ V + T D+I A IG + +++ G Q+
Sbjct: 330 IEELKKKTKLPIVIKGV---QRTEDVIKAAE------IGVSGV----VLSNHGGRQLDFS 376
Query: 317 DNCVEVAS-----------KFDIPVIADGGIRYSGDVAKALALGASSVMIG 356
+EV + K + V DGG+R DV KAL LGA V +G
Sbjct: 377 RAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 427
>pdb|1LCO|A Chain A, Mol_id: 1; Molecule: L-Lactate Dehydrogenase; Chain: A, B;
Synonym: Cytochrome C Oxidoreductase, Flavocytochrome
B2; Ec: 1.1.2.3; Engineered: Yes; Mutation: Tyr 143 Phe;
Heterogen: Phenyl-Pyruvate
pdb|1LDC|A Chain A, L-Lactate Dehydrogenase: Cytochrome C Oxidoreductase
(Flavocytochrome B2) (E.C.1.1.2.3) Mutant With Tyr 143
Replaced By Phe (Y143f) Complexed With Pyruvate
pdb|1LCO|B Chain B, Mol_id: 1; Molecule: L-Lactate Dehydrogenase; Chain: A, B;
Synonym: Cytochrome C Oxidoreductase, Flavocytochrome
B2; Ec: 1.1.2.3; Engineered: Yes; Mutation: Tyr 143 Phe;
Heterogen: Phenyl-Pyruvate
pdb|1LDC|B Chain B, L-Lactate Dehydrogenase: Cytochrome C Oxidoreductase
(Flavocytochrome B2) (E.C.1.1.2.3) Mutant With Tyr 143
Replaced By Phe (Y143f) Complexed With Pyruvate
Length = 511
Score = 34.7 bits (78), Expect = 0.024
Identities = 31/111 (27%), Positives = 49/111 (43%), Gaps = 24/111 (21%)
Query: 257 LEEIKKSLVVDVIVGNVVTKEATSDLISAGADAIKVGIGPGSICTTRIVAGVGMPQVSAI 316
+EE+KK + +++ V + T D+I A IG + +++ G Q+
Sbjct: 335 IEELKKKTKLPIVIKGV---QRTEDVIKAAE------IGVSGV----VLSNHGGRQLDFS 381
Query: 317 DNCVEVAS-----------KFDIPVIADGGIRYSGDVAKALALGASSVMIG 356
+EV + K + V DGG+R DV KAL LGA V +G
Sbjct: 382 RAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 432
>pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1FCB|A Chain A, Flavocytochrome b2 (E.C.1.1.2.3)
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1FCB|B Chain B, Flavocytochrome b2 (E.C.1.1.2.3)
Length = 511
Score = 34.7 bits (78), Expect = 0.024
Identities = 31/111 (27%), Positives = 49/111 (43%), Gaps = 24/111 (21%)
Query: 257 LEEIKKSLVVDVIVGNVVTKEATSDLISAGADAIKVGIGPGSICTTRIVAGVGMPQVSAI 316
+EE+KK + +++ V + T D+I A IG + +++ G Q+
Sbjct: 335 IEELKKKTKLPIVIKGV---QRTEDVIKAAE------IGVSGV----VLSNHGGRQLDFS 381
Query: 317 DNCVEVAS-----------KFDIPVIADGGIRYSGDVAKALALGASSVMIG 356
+EV + K + V DGG+R DV KAL LGA V +G
Sbjct: 382 RAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 432
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
Length = 412
Score = 34.7 bits (78), Expect = 0.024
Identities = 31/111 (27%), Positives = 49/111 (43%), Gaps = 24/111 (21%)
Query: 257 LEEIKKSLVVDVIVGNVVTKEATSDLISAGADAIKVGIGPGSICTTRIVAGVGMPQVSAI 316
+EE+KK + +++ V + T D+I A IG + +++ G Q+
Sbjct: 236 IEELKKKTKLPIVIKGV---QRTEDVIKAAE------IGVSGV----VLSNHGGRQLDFS 282
Query: 317 DNCVEVAS-----------KFDIPVIADGGIRYSGDVAKALALGASSVMIG 356
+EV + K + V DGG+R DV KAL LGA V +G
Sbjct: 283 RAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 333
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 34.7 bits (78), Expect = 0.024
Identities = 31/111 (27%), Positives = 49/111 (43%), Gaps = 24/111 (21%)
Query: 257 LEEIKKSLVVDVIVGNVVTKEATSDLISAGADAIKVGIGPGSICTTRIVAGVGMPQVSAI 316
+EE+KK + +++ V + T D+I A IG + +++ G Q+
Sbjct: 234 IEELKKKTKLPIVIKGV---QRTEDVIKAAE------IGVSGV----VLSNHGGRQLDFS 280
Query: 317 DNCVEVAS-----------KFDIPVIADGGIRYSGDVAKALALGASSVMIG 356
+EV + K + V DGG+R DV KAL LGA V +G
Sbjct: 281 RAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 331
>pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions.
pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
Length = 311
Score = 33.9 bits (76), Expect = 0.041
Identities = 19/56 (33%), Positives = 30/56 (52%), Gaps = 2/56 (3%)
Query: 304 IVAGVGMPQVS--AIDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIGS 357
I G+ P + A+ +VA DIP+I GG+ + DV + GAS+V +G+
Sbjct: 216 ITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGT 271
>pdb|1H5Y|A Chain A, Hisf Protein From Pyrobaculum Aerophilum
pdb|1H5Y|B Chain B, Hisf Protein From Pyrobaculum Aerophilum
Length = 253
Score = 33.9 bits (76), Expect = 0.041
Identities = 42/147 (28%), Positives = 62/147 (41%), Gaps = 13/147 (8%)
Query: 223 GVGQLDRAEMLVKAGVDALVLDSAHGHSANILHTL--EEIKKSLVVDVIV---GNVVTKE 277
GV L+ A L +AG D + +++A + ++ L E +S VV + G
Sbjct: 85 GVRSLEDATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVY 144
Query: 278 ATSDLISAGADAIKVG-----IGPGSICTTRIVA-GVGMPQVSAIDNCVEVASKFDIPVI 331
+ G DA+K +G G I T I G G+ ++ VA IPVI
Sbjct: 145 VKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGY--DVELIRRVADSVRIPVI 202
Query: 332 ADGGIRYSGDVAKALALGASSVMIGSL 358
A GG +A A GA +V+ SL
Sbjct: 203 ASGGAGRVEHFYEAAAAGADAVLAASL 229
Score = 28.9 bits (63), Expect = 1.3
Identities = 14/42 (33%), Positives = 19/42 (44%)
Query: 316 IDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIGS 357
ID+ VA IPV+ GG+R D GA V + +
Sbjct: 66 IDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNT 107
>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|B Chain B, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|C Chain C, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|D Chain D, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|E Chain E, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|F Chain F, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|G Chain G, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|H Chain H, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|I Chain I, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|J Chain J, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|K Chain K, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|L Chain L, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|M Chain M, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|N Chain N, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
Length = 193
Score = 31.2 bits (69), Expect = 0.27
Identities = 19/64 (29%), Positives = 34/64 (52%), Gaps = 4/64 (6%)
Query: 74 DIQTQVKEITKVKKSESGVINDPIFIHAHRTLADAKVITDNYKISGVPVVDDKGLLIGIL 133
DI+ +EI KVK G +N+ + +H ++L + T+ + P + GL+ IL
Sbjct: 134 DIEIHAREILKVK----GRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 189
Query: 134 TNRD 137
T+R+
Sbjct: 190 THRN 193
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 30.8 bits (68), Expect = 0.35
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 108 AKVITDNYKISGVPVVDDKGLLIGILTNRDVRFETDLSKKVGDVMTKMPLVTAHVGISLD 167
AKVIT Y I P ++ KG + L DL K+ + +P V A+V + D
Sbjct: 170 AKVIT--YDIFRNPELEKKGYYVDSLD--------DLYKQADVISLHVPDVPANVHMIND 219
Query: 168 EASDLMHKH----KIEKLPIVDKDNVLKGL 193
E+ M + + + P+VD D V++GL
Sbjct: 220 ESIAKMKQDVVIVNVSRGPLVDTDAVIRGL 249
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 30.8 bits (68), Expect = 0.35
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 108 AKVITDNYKISGVPVVDDKGLLIGILTNRDVRFETDLSKKVGDVMTKMPLVTAHVGISLD 167
AKVIT Y I P ++ KG + L DL K+ + +P V A+V + D
Sbjct: 170 AKVIT--YDIFRNPELEKKGYYVDSLD--------DLYKQADVISLHVPDVPANVHMIND 219
Query: 168 EASDLMHKH----KIEKLPIVDKDNVLKGL 193
E+ M + + + P+VD D V++GL
Sbjct: 220 ESIAKMKQDVVIVNVSRGPLVDTDAVIRGL 249
>pdb|1DBP| D-Ribose-Binding Protein Mutant With Gly 72 Replaced By Asp (G72d)
Length = 271
Score = 29.3 bits (64), Expect = 1.0
Identities = 26/93 (27%), Positives = 42/93 (44%), Gaps = 10/93 (10%)
Query: 315 AIDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIGSLLAGTEESPGDFMIYQ- 373
A+DN V++A++ +IPVI G+V + AS ++G +A GD++ +
Sbjct: 70 AVDNAVKMANQANIPVITLDRQATKGEVVSHI---ASDNVLGGKIA------GDYIAKKA 120
Query: 374 GRQYKSYRGMGSIGAMTKGSSDRYFQEGVASEK 406
G K G G FQ+ VA+ K
Sbjct: 121 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 153
>pdb|1JJY|A Chain A, Crystal Structure Of A Ni-Containing Carbon Monoxide
Dehydrogenase From Carboxydothermus Hydrogenoformans
Length = 636
Score = 28.1 bits (61), Expect = 2.3
Identities = 12/35 (34%), Positives = 20/35 (56%)
Query: 230 AEMLVKAGVDALVLDSAHGHSANILHTLEEIKKSL 264
AE++V G+D + A GHS + H +KK++
Sbjct: 74 AEVIVARGLDRSIAAGAAGHSGHAKHLAHTLKKAV 108
>pdb|1KYH|A Chain A, Structural Genomics, Hypothetical Protein In Sigy-Cydd
Intergenic Region
Length = 276
Score = 27.7 bits (60), Expect = 3.0
Identities = 12/32 (37%), Positives = 16/32 (49%)
Query: 304 IVAGVGMPQVSAIDNCVEVASKFDIPVIADGG 335
I G G+PQ ++ V+ D PVI D G
Sbjct: 99 IAIGPGLPQTESVQQAVDHVLTADCPVILDAG 130
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
Length = 1520
Score = 27.7 bits (60), Expect = 3.0
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 251 ANILHTLEEIKKSLVVDV-IVGNVVTKEATSDLISAGADAIKV-----GIGPGSICTTRI 304
A +++ L +I V V +V + + + A AD I++ G G + + +
Sbjct: 1016 AQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKH 1075
Query: 305 VAG---VGMPQVSAIDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIGSL 358
+G+ +V + +E + + + ADGG++ DV A +GA GS+
Sbjct: 1076 AGSPWELGVTEVHRV--LMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSI 1130
>pdb|1EYE|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of 6-
Hydroxymethyl-7,8-Dihydropteroate Synthase (Dhps) From
Mycobacterium Tuberculosis In Complex With 6-
Hydroxymethylpterin Monophosphate
Length = 280
Score = 27.3 bits (59), Expect = 3.9
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 266 VDVIVGNVVTKEATSDLISAGADAIKVGIGPGSI 299
V V GNVV E +DL+++ ADA+ G+ P +
Sbjct: 142 VPVRYGNVVA-EVRADLLASVADAVAAGVDPARL 174
>pdb|1G8M|A Chain A, Crystal Structure Of Avian Atic, A Bifunctional
Transformylase And Cyclohydrolase Enzyme In Purine
Biosynthesis At 1.75 Ang. Resolution
pdb|1G8M|B Chain B, Crystal Structure Of Avian Atic, A Bifunctional
Transformylase And Cyclohydrolase Enzyme In Purine
Biosynthesis At 1.75 Ang. Resolution
Length = 593
Score = 27.3 bits (59), Expect = 3.9
Identities = 14/46 (30%), Positives = 24/46 (51%)
Query: 252 NILHTLEEIKKSLVVDVIVGNVVTKEATSDLISAGADAIKVGIGPG 297
NI+ + + +S V D+IV ++ K S+ + D +GIG G
Sbjct: 403 NIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAG 448
>pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|2DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|1DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|1DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Length = 311
Score = 26.9 bits (58), Expect = 5.1
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 325 KFDIPVIADGGIRYSGDVAKALALGASSVMIGSLLAGTEESPGDFMIYQGRQYKSYRGMG 384
K +I +I GGI D + L GA+ + IG+ L + D +I + + + +G
Sbjct: 240 KPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQ 299
Query: 385 SI 386
SI
Sbjct: 300 SI 301
>pdb|1BRW|B Chain B, The Crystal Structure Of Pyrimidine Nucleoside
Phosphorylase In A Closed Conformation
pdb|1BRW|A Chain A, The Crystal Structure Of Pyrimidine Nucleoside
Phosphorylase In A Closed Conformation
Length = 433
Score = 26.9 bits (58), Expect = 5.1
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 22/187 (11%)
Query: 127 GLLIGILTNRDVRFETDLSKKVGDVMTKM--PLVTAHVGISLDEASDLMHKH------KI 178
G ++ + + R V+ + + VGD T + PLV A VG+ + + S H K+
Sbjct: 66 GEMLDLSSIRGVKVDKHSTGGVGDTTTLVLGPLV-ASVGVPVAKMSGRGLGHTGGTIDKL 124
Query: 179 EKLP----IVDKDNVLKGLIT---IKDIQKRIEYPEANKDDFGRLRVGAAIGVGQLDRAE 231
E +P + KD ++ L+ I I + + A+K + V A + L +
Sbjct: 125 ESVPGFHVEISKDEFIR-LVNENGIAIIGQTGDLTPADKKLYALRDVTATVNSIPLIASS 183
Query: 232 MLVK---AGVDALVLDSAHGHSANILHTLEEIKKSLVVDVIVGNVVTKEATSDLISAGAD 288
++ K AG DA+VLD G A + L+E ++ V V +G V + T +IS +
Sbjct: 184 IMSKKIAAGADAIVLDVKTGAGA-FMKKLDEARRLARVMVDIGKRVGRR-TMAVISDMSQ 241
Query: 289 AIKVGIG 295
+ +G
Sbjct: 242 PLGYAVG 248
>pdb|1E6V|C Chain C, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
pdb|1E6V|F Chain F, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
Length = 258
Score = 26.9 bits (58), Expect = 5.1
Identities = 20/78 (25%), Positives = 34/78 (42%)
Query: 52 TEHKTAIAMARLGGIGIVHKNMDIQTQVKEITKVKKSESGVINDPIFIHAHRTLADAKVI 111
T H A+ + G + + + + E+ VK +++PI + A D K
Sbjct: 158 TVHGHALRLDENGLMLHALRRYRLNEETGEVEYVKDQVGIELDEPIPVGAPADEDDLKER 217
Query: 112 TDNYKISGVPVVDDKGLL 129
T Y+I G P +D+ LL
Sbjct: 218 TTIYRIDGTPYREDEELL 235
>pdb|1QAP|A Chain A, Quinolinic Acid Phosphoribosyltransferase With Bound
Quinolinic Acid
pdb|1QAP|B Chain B, Quinolinic Acid Phosphoribosyltransferase With Bound
Quinolinic Acid
Length = 296
Score = 26.9 bits (58), Expect = 5.1
Identities = 21/76 (27%), Positives = 36/76 (46%), Gaps = 4/76 (5%)
Query: 218 VGAAIGVGQLDRAEMLVKAGVDALVLDSAHGHSANILHTLEEIKKSLVVDVIVGNVVTKE 277
V + V LD + +KAG D ++LD+ ++ + ++ + ++V GN VT E
Sbjct: 209 VPVEVEVENLDELDDALKAGADIIMLDNF--NTDQMREAVKRVNGQARLEV-SGN-VTAE 264
Query: 278 ATSDLISAGADAIKVG 293
+ G D I VG
Sbjct: 265 TLREFAETGVDFISVG 280
>pdb|2DRI| D-Ribose-Binding Protein Complexed With Beta-D-Ribose
pdb|1URP|A Chain A, D-Ribose-Binding Protein From Escherichia Coli
pdb|1URP|B Chain B, D-Ribose-Binding Protein From Escherichia Coli
pdb|1URP|C Chain C, D-Ribose-Binding Protein From Escherichia Coli
pdb|1URP|D Chain D, D-Ribose-Binding Protein From Escherichia Coli
Length = 271
Score = 26.6 bits (57), Expect = 6.6
Identities = 25/93 (26%), Positives = 41/93 (43%), Gaps = 10/93 (10%)
Query: 315 AIDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIGSLLAGTEESPGDFMIYQ- 373
A+ N V++A++ +IPVI G+V + AS ++G +A GD++ +
Sbjct: 70 AVGNAVKMANQANIPVITLDRQATKGEVVSHI---ASDNVLGGKIA------GDYIAKKA 120
Query: 374 GRQYKSYRGMGSIGAMTKGSSDRYFQEGVASEK 406
G K G G FQ+ VA+ K
Sbjct: 121 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 153
>pdb|1BA2|A Chain A, D67r Mutant Of D-Ribose-Binding Protein From Escherichia
Coli
pdb|1BA2|B Chain B, D67r Mutant Of D-Ribose-Binding Protein From Escherichia
Coli
Length = 271
Score = 26.6 bits (57), Expect = 6.6
Identities = 25/93 (26%), Positives = 41/93 (43%), Gaps = 10/93 (10%)
Query: 315 AIDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIGSLLAGTEESPGDFMIYQ- 373
A+ N V++A++ +IPVI G+V + AS ++G +A GD++ +
Sbjct: 70 AVGNAVKMANQANIPVITLDRQATKGEVVSHI---ASDNVLGGKIA------GDYIAKKA 120
Query: 374 GRQYKSYRGMGSIGAMTKGSSDRYFQEGVASEK 406
G K G G FQ+ VA+ K
Sbjct: 121 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHK 153
>pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin,
Hbp23.
pdb|1QQ2|B Chain B, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin,
Hbp23
Length = 199
Score = 26.6 bits (57), Expect = 6.6
Identities = 20/56 (35%), Positives = 30/56 (52%), Gaps = 3/56 (5%)
Query: 83 TKVKKSESGVINDPIFIHAHRTLA-DAKVITDNYKIS--GVPVVDDKGLLIGILTN 135
T K+ G +N P+ RT+A D V+ + IS G+ ++DDKG+L I N
Sbjct: 90 TPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITIN 145
>pdb|1EZW|A Chain A, Structure Of Coenzyme F420 Dependent
Tetrahydromethanopterin Reductase From Methanopyrus
Kandler
Length = 349
Score = 26.2 bits (56), Expect = 8.6
Identities = 19/74 (25%), Positives = 33/74 (43%), Gaps = 2/74 (2%)
Query: 217 RVGAAIGVGQLDRAEMLVKAGVDALVLDSAHGHSANILHTLEEIKKSLVVDVIVGNVVTK 276
++ AIG G A LV D + S G ++ +EE+ K+ V V+VG+ +
Sbjct: 273 QIAEAIGKGDFGTAIGLVDE--DMIEAFSIAGDPDTVVDKIEELLKAGVTQVVVGSPIGP 330
Query: 277 EATSDLISAGADAI 290
+ + G + I
Sbjct: 331 DKEKAIELVGQEVI 344
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 26.2 bits (56), Expect = 8.6
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 182 PIVDKDNVLKGLITIKDIQKRIEYPEANKDDFGRLR-VGAAIGVGQLDRA 230
PI+ KDN ++ L+ + Q + E PE + L V IG+ QL ++
Sbjct: 353 PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS 402
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.136 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,615,191
Number of Sequences: 13198
Number of extensions: 111056
Number of successful extensions: 302
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 39
length of query: 481
length of database: 2,899,336
effective HSP length: 92
effective length of query: 389
effective length of database: 1,685,120
effective search space: 655511680
effective search space used: 655511680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)