BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645450|ref|NP_207624.1| conserved hypothetical ATP
binding protein [Helicobacter pylori 26695]
(196 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp 83 2e-17
pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication In... 36 0.003
pdb|1JFG|A Chain A, Trichodiene Synthase From Fusarium Spor... 27 2.1
pdb|1KIY|A Chain A, D100e Trichodiene Synthase >gi|20150817... 27 2.1
pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransfe... 26 2.7
pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter P... 26 2.7
pdb|1QKU|A Chain A, Wild Type Estrogen Nuclear Receptor Lig... 26 3.5
pdb|1QKT|A Chain A, Mutant Estrogen Nuclear Receptor Ligand... 26 3.5
pdb|1KKL|A Chain A, L.Casei HprkP IN COMPLEX WITH B.SUBTILI... 26 3.5
pdb|1GWQ|A Chain A, Human Oestrogen Receptor Alpha Ligand-B... 26 3.5
pdb|1JB1|A Chain A, Lactobacillus Casei HprkP BOUND TO PHOS... 26 3.5
pdb|1L2I|B Chain B, Human Estrogen Receptor Alpha Ligand-Bi... 26 3.5
pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase C... 26 3.5
pdb|1A52|A Chain A, Estrogen Receptor Alpha Ligand-Binding ... 26 3.5
pdb|1ERE|A Chain A, Human Estrogen Receptor Ligand-Binding ... 26 3.5
pdb|1G50|A Chain A, Crystal Structure Of A Wild Type Her Al... 26 3.5
pdb|3ERT|A Chain A, Human Estrogen Receptor Alpha Ligand-Bi... 26 3.5
pdb|1GWR|A Chain A, Human Oestrogen Receptor Alpha Ligand-B... 26 3.5
pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase... 26 3.5
pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 25 7.8
pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 25 7.8
pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 25 7.8
pdb|1ESM|A Chain A, Structural Basis For The Feedback Regul... 25 7.8
>pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp
Length = 206
Score = 83.2 bits (204), Expect = 2e-17
Identities = 55/179 (30%), Positives = 92/179 (50%), Gaps = 8/179 (4%)
Query: 7 IALTGGIGTGKSTTIKILESQGYKILDADKIAHQLLQEHR---FKIAQHFGSDIL-EKDI 62
+ LTGGIG+GK+T + G ++DAD +A +++ + KI +HFG+ IL E+
Sbjct: 5 VGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGE 64
Query: 63 LNRKKLGAIVFQDAHELKWLEDFLHPLIREHMLKKAYELEKNHQAYFLDIPLFFEVGGKK 122
LNR L VF + WL + LHP IRE M +K E + + +PL E K
Sbjct: 65 LNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLAEQTAPYTLFV--VPLLIE--NKL 120
Query: 123 CYPVSKVVLVYASRALQIERLLERDKLKEAEILQRLACQMDIEQKRAMSDYIIDNSSSL 181
++++V S Q+ R +RD +I + + Q+ +++ +D +I+N + L
Sbjct: 121 TALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRIMNSQVSQQERLKWADDVINNDAEL 179
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 36.2 bits (82), Expect = 0.003
Identities = 39/193 (20%), Positives = 85/193 (43%), Gaps = 25/193 (12%)
Query: 3 LKNAIALTGGIGTGKSTTIKI----LESQGYKIL--DADKIAHQLLQEHRFKIAQHFGSD 56
L N I + G +GTGK+ ++ + +GY+++ AD A ++ + F +
Sbjct: 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAXVEHLKKGTINEFRNX 95
Query: 57 ILEKDILNRKKLGAIVFQDAHELKWLEDFLHPLIREHMLKKAYELEKNHQAYFLDIPLFF 116
D+L L + F E +E F H+ Y LEK I L
Sbjct: 96 YKSVDLL---LLDDVQFLSGKERTQIEFF-------HIFNTLYLLEK-------QIILAS 138
Query: 117 EVGGKKCYPVSKVVLVYASRALQIERLLERDKLKEAEILQRLACQMDIEQKRAMSDYIID 176
+ +K VS ++ + +E +E D +I++ + ++E ++ + DY+++
Sbjct: 139 DRHPQKLDGVSDRLVSRFEGGILVE--IELDNKTRFKIIKEKLKEFNLELRKEVIDYLLE 196
Query: 177 NSSSLKDLNKQVE 189
N+ +++++ +++
Sbjct: 197 NTKNVREIEGKIK 209
>pdb|1JFG|A Chain A, Trichodiene Synthase From Fusarium Sporotrichioides
Complexed With Diphosphate
pdb|1JFG|B Chain B, Trichodiene Synthase From Fusarium Sporotrichioides
Complexed With Diphosphate
pdb|1JFA|A Chain A, Trichodiene Synthase From Fusarium Sporotrichioides
pdb|1JFA|B Chain B, Trichodiene Synthase From Fusarium Sporotrichioides
Length = 374
Score = 26.6 bits (57), Expect = 2.1
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 29 YKILDADKIAHQLLQEHRF--KIAQHFGSDILEKDILNRKKLGAIVF--QDAHELKWLED 84
YK D ++ L++ + +I+ H + L +D L+ K VF +D + +E
Sbjct: 231 YKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAVFSDKDPQVMDTIEC 290
Query: 85 FLHPLIREHMLKKAYELEKNHQ 106
F+H + H+ + Y L + ++
Sbjct: 291 FMHGYVTWHLCDRRYRLSEIYE 312
>pdb|1KIY|A Chain A, D100e Trichodiene Synthase
pdb|1KIY|B Chain B, D100e Trichodiene Synthase
pdb|1KIZ|A Chain A, D100e Trichodiene Synthase Complexed With Pyrophosphate
pdb|1KIZ|B Chain B, D100e Trichodiene Synthase Complexed With Pyrophosphate
Length = 374
Score = 26.6 bits (57), Expect = 2.1
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 29 YKILDADKIAHQLLQEHRF--KIAQHFGSDILEKDILNRKKLGAIVF--QDAHELKWLED 84
YK D ++ L++ + +I+ H + L +D L+ K VF +D + +E
Sbjct: 231 YKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAVFSDKDPQVMDTIEC 290
Query: 85 FLHPLIREHMLKKAYELEKNHQ 106
F+H + H+ + Y L + ++
Sbjct: 291 FMHGYVTWHLCDRRYRLSEIYE 312
>pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
Length = 244
Score = 26.2 bits (56), Expect = 2.7
Identities = 17/55 (30%), Positives = 30/55 (53%), Gaps = 3/55 (5%)
Query: 13 IGTGKST-TIKILESQGYKILDADKIAHQLLQEHRFKIAQHFGSDILEKDILNRK 66
IG+GK T+++++ + + A +I H+L + K+ H +L KDIL K
Sbjct: 37 IGSGKGHFTLELVQRCNF--VTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK 89
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
Length = 330
Score = 26.2 bits (56), Expect = 2.7
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 4 KNAIALTGGIGTGKSTTIKILES---QGYKILDADKIAHQLLQEHRFKIAQHFGSDILEK 60
KN I + GG G+GK+T IK + + +I+ + + + H+ FG +I
Sbjct: 172 KNVI-VCGGTGSGKTTYIKSIXEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSA 230
Query: 61 DIL 63
D L
Sbjct: 231 DCL 233
>pdb|1QKU|A Chain A, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|B Chain B, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|C Chain C, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
Length = 250
Score = 25.8 bits (55), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (54%)
Query: 3 LKNAIALTGGIGTGKSTTIKILESQGYKILDADKIAHQLL 42
LK+ I L G+ T S+T+K LE + + DKI L+
Sbjct: 148 LKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLI 187
>pdb|1QKT|A Chain A, Mutant Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
Length = 248
Score = 25.8 bits (55), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (54%)
Query: 3 LKNAIALTGGIGTGKSTTIKILESQGYKILDADKIAHQLL 42
LK+ I L G+ T S+T+K LE + + DKI L+
Sbjct: 145 LKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLI 184
>pdb|1KKL|A Chain A, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
pdb|1KKL|B Chain B, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
pdb|1KKL|C Chain C, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
pdb|1KKM|A Chain A, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
pdb|1KKM|B Chain B, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
pdb|1KKM|C Chain C, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
Length = 205
Score = 25.8 bits (55), Expect = 3.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 7 IALTGGIGTGKSTTIKILESQGYKILDADKI 37
+ +TG G GKS T L +G++++ D++
Sbjct: 37 VLITGDSGVGKSETALELVQRGHRLIADDRV 67
>pdb|1GWQ|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
pdb|1GWQ|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
Length = 248
Score = 25.8 bits (55), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (54%)
Query: 3 LKNAIALTGGIGTGKSTTIKILESQGYKILDADKIAHQLL 42
LK+ I L G+ T S+T+K LE + + DKI L+
Sbjct: 148 LKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLI 187
>pdb|1JB1|A Chain A, Lactobacillus Casei HprkP BOUND TO PHOSPHATE
Length = 205
Score = 25.8 bits (55), Expect = 3.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 7 IALTGGIGTGKSTTIKILESQGYKILDADKI 37
+ +TG G GKS T L +G++++ D++
Sbjct: 37 VLITGDSGVGKSETALELVQRGHRLIADDRV 67
>pdb|1L2I|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|1L2I|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
Length = 261
Score = 25.8 bits (55), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (54%)
Query: 3 LKNAIALTGGIGTGKSTTIKILESQGYKILDADKIAHQLL 42
LK+ I L G+ T S+T+K LE + + DKI L+
Sbjct: 155 LKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLI 194
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 25.8 bits (55), Expect = 3.5
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 58 LEKDILNRKKLGAIVFQDAHELKWLEDFLHPLIRE-HMLKKAYE---LEKNHQA------ 107
+EK + RKK +F + LK +F + E ++K + L K A
Sbjct: 22 IEKHVCFRKKRSLCLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTG 81
Query: 108 -----YFLDIPLFFEVGGKKCYPVSKVVLVYASRALQIERLLER 146
+ L + LF + GK+CY + L+ A I + E+
Sbjct: 82 VGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEK 125
>pdb|1A52|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
pdb|1A52|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
Length = 258
Score = 25.8 bits (55), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (54%)
Query: 3 LKNAIALTGGIGTGKSTTIKILESQGYKILDADKIAHQLL 42
LK+ I L G+ T S+T+K LE + + DKI L+
Sbjct: 152 LKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLI 191
>pdb|1ERE|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|C Chain C, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|D Chain D, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|E Chain E, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|F Chain F, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERR|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
pdb|1ERR|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
Length = 253
Score = 25.8 bits (55), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (54%)
Query: 3 LKNAIALTGGIGTGKSTTIKILESQGYKILDADKIAHQLL 42
LK+ I L G+ T S+T+K LE + + DKI L+
Sbjct: 148 LKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLI 187
>pdb|1G50|A Chain A, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|B Chain B, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|C Chain C, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
Length = 247
Score = 25.8 bits (55), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (54%)
Query: 3 LKNAIALTGGIGTGKSTTIKILESQGYKILDADKIAHQLL 42
LK+ I L G+ T S+T+K LE + + DKI L+
Sbjct: 145 LKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLI 184
>pdb|3ERT|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 4-Hydroxytamoxifen
pdb|3ERD|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERD|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
Length = 261
Score = 25.8 bits (55), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (54%)
Query: 3 LKNAIALTGGIGTGKSTTIKILESQGYKILDADKIAHQLL 42
LK+ I L G+ T S+T+K LE + + DKI L+
Sbjct: 155 LKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLI 194
>pdb|1GWR|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
pdb|1GWR|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
Length = 245
Score = 25.8 bits (55), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (54%)
Query: 3 LKNAIALTGGIGTGKSTTIKILESQGYKILDADKIAHQLL 42
LK+ I L G+ T S+T+K LE + + DKI L+
Sbjct: 144 LKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLI 183
>pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd)
Length = 345
Score = 25.8 bits (55), Expect = 3.5
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 3 LKNAIALTGGIG-TGKSTTIKILESQGYKILDADKIAHQLLQEHR--FKIAQHFGSDILE 59
L N +A G +GKS + +LE+ GY I+ + A +L+ + F AQ++ +
Sbjct: 100 LVNPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAM-- 157
Query: 60 KDILN-RKKLG 69
K++ N RK LG
Sbjct: 158 KNVANVRKTLG 168
>pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 24.6 bits (52), Expect = 7.8
Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 44 EHRFKIAQHFGSDILEKDILNR-KKLGAIVFQDAHEL------KWLEDFLHPLIREHMLK 96
E RF I+ + + + ++L R KL + Q H+ +W +D + +
Sbjct: 206 ETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDL------DFVTT 259
Query: 97 KAYELEKNHQAYFLDIPLFFEVGGKKCYPVSKVVLVYASRALQI--ERLLERDKLKEAEI 154
Y ++ + YF + ++FE Y ++V+LV + I + +KE E
Sbjct: 260 LPYARDRVVECYFWALGVYFEPQ----YSQARVMLVKTISMISIVDDTFDAYGTVKELEA 315
Query: 155 LQRLACQMDIEQKRAMSDYIIDNSSSLKDLNKQVERFLKT 194
+ DI + + DY+ + ++ DL K E+ L +
Sbjct: 316 YTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSS 355
>pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate
Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 24.6 bits (52), Expect = 7.8
Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 44 EHRFKIAQHFGSDILEKDILNR-KKLGAIVFQDAHEL------KWLEDFLHPLIREHMLK 96
E RF I+ + + + ++L R KL + Q H+ +W +D + +
Sbjct: 206 ETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDL------DFVTT 259
Query: 97 KAYELEKNHQAYFLDIPLFFEVGGKKCYPVSKVVLVYASRALQI--ERLLERDKLKEAEI 154
Y ++ + YF + ++FE Y ++V+LV + I + +KE E
Sbjct: 260 LPYARDRVVECYFWALGVYFEPQ----YSQARVMLVKTISMISIVDDTFDAYGTVKELEA 315
Query: 155 LQRLACQMDIEQKRAMSDYIIDNSSSLKDLNKQVERFLKT 194
+ DI + + DY+ + ++ DL K E+ L +
Sbjct: 316 YTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSS 355
>pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 24.6 bits (52), Expect = 7.8
Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 44 EHRFKIAQHFGSDILEKDILNR-KKLGAIVFQDAHEL------KWLEDFLHPLIREHMLK 96
E RF I+ + + + ++L R KL + Q H+ +W +D + +
Sbjct: 206 ETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDL------DFVTT 259
Query: 97 KAYELEKNHQAYFLDIPLFFEVGGKKCYPVSKVVLVYASRALQI--ERLLERDKLKEAEI 154
Y ++ + YF + ++FE Y ++V+LV + I + +KE E
Sbjct: 260 LPYARDRVVECYFWALGVYFEPQ----YSQARVMLVKTISMISIVDDTFDAYGTVKELEA 315
Query: 155 LQRLACQMDIEQKRAMSDYIIDNSSSLKDLNKQVERFLKT 194
+ DI + + DY+ + ++ DL K E+ L +
Sbjct: 316 YTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSS 355
>pdb|1ESM|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
Length = 316
Score = 24.6 bits (52), Expect = 7.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 7 IALTGGIGTGKSTTIKILES 26
I++ G + GKSTT ++L++
Sbjct: 91 ISIAGSVAVGKSTTARVLQA 110
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.139 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,052,609
Number of Sequences: 13198
Number of extensions: 40893
Number of successful extensions: 147
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 23
length of query: 196
length of database: 2,899,336
effective HSP length: 83
effective length of query: 113
effective length of database: 1,803,902
effective search space: 203840926
effective search space used: 203840926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)