BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645452|ref|NP_207626.1| hypothetical protein
[Helicobacter pylori 26695]
(292 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino A... 27 2.8
pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino A... 27 2.8
pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotrans... 27 2.8
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotrans... 27 2.8
pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-Phosph... 27 2.8
pdb|1L2Q|A Chain A, Crystal Structure Of The Methanosarcina... 26 4.7
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 26.9 bits (58), Expect = 2.8
Identities = 12/51 (23%), Positives = 24/51 (46%)
Query: 230 KSDDFYTIGDKALDAIEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERF 280
K D Y GD + +++ +M D+L + + I I + + K++F
Sbjct: 19 KEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKF 69
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 26.9 bits (58), Expect = 2.8
Identities = 12/51 (23%), Positives = 24/51 (46%)
Query: 230 KSDDFYTIGDKALDAIEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERF 280
K D Y GD + +++ +M D+L + + I I + + K++F
Sbjct: 19 KEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKF 69
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 26.9 bits (58), Expect = 2.8
Identities = 12/51 (23%), Positives = 24/51 (46%)
Query: 230 KSDDFYTIGDKALDAIEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERF 280
K D Y GD + +++ +M D+L + + I I + + K++F
Sbjct: 19 KEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKF 69
>pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 26.9 bits (58), Expect = 2.8
Identities = 12/51 (23%), Positives = 24/51 (46%)
Query: 230 KSDDFYTIGDKALDAIEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERF 280
K D Y GD + +++ +M D+L + + I I + + K++F
Sbjct: 19 KEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKF 69
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-Phosphate Enzyme D-Amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-Phosphate Enzyme D-Amino
Acid Aminotransferase
Length = 282
Score = 26.9 bits (58), Expect = 2.8
Identities = 12/51 (23%), Positives = 24/51 (46%)
Query: 230 KSDDFYTIGDKALDAIEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERF 280
K D Y GD + +++ +M D+L + + I I + + K++F
Sbjct: 19 KEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKF 69
>pdb|1L2Q|A Chain A, Crystal Structure Of The Methanosarcina Barkeri
Monomethylamine Methyltransferase (Mtmb)
pdb|1L2R|A Chain A, Crystal Structure Of The Methanosarcina Barkeri
Monomethylamine Methyltransferase (Mtmb)
Length = 458
Score = 26.2 bits (56), Expect = 4.7
Identities = 21/65 (32%), Positives = 32/65 (48%), Gaps = 9/65 (13%)
Query: 233 DFYT---IGDKAL----DAIEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKSNTE 285
DFY +G+K D ++I M LK+ LD + + I D D ++ FK+ E
Sbjct: 11 DFYDRAKVGEKCTQDDWDLMKIPMKAMELKQKYG--LDFKGEFIPTDKDMMEKLFKAGFE 68
Query: 286 LFLEC 290
+ LEC
Sbjct: 69 MLLEC 73
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.132 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,679,394
Number of Sequences: 13198
Number of extensions: 72427
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 6
length of query: 292
length of database: 2,899,336
effective HSP length: 87
effective length of query: 205
effective length of database: 1,751,110
effective search space: 358977550
effective search space used: 358977550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)