BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645453|ref|NP_207627.1| GTP-binding protein
homologue (yphC) [Helicobacter pylori 26695]
(458 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved... 60 4e-10
pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution ... 41 3e-04
pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp 35 0.023
pdb|821P| C-H-Ras P21 Protein (Residues 1 - 166) Mutant W... 34 0.039
pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protei... 34 0.039
pdb|1JAH| H-Ras P21 Protein Mutant G12p, Complexed With G... 33 0.051
pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34 - A Nove... 30 0.43
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Re... 28 2.2
pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor,... 28 2.2
pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts Fr... 28 2.2
pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Fac... 28 2.2
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 28 2.8
pdb|1LW7|A Chain A, Nadr Protein From Haemophilus Influenzae 27 3.7
pdb|1KFD| Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7... 27 4.8
pdb|1KLN|A Chain A, Dna Polymerase I (Klenow Fragment) (E.C... 27 4.8
pdb|1E3D|B Chain B, [nife] Hydrogenase From Desulfovibrio D... 27 4.8
pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Su... 27 4.8
pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna... 27 4.8
pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With T... 27 4.8
pdb|1CSH| Citrate Synthase (E.C.4.1.3.7) Complexed With O... 27 4.8
pdb|1JWG|A Chain A, Vhs Domain Of Human Gga1 Complexed With... 27 6.3
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 27 6.3
pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5 26 8.2
>pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
Length = 301
Score = 60.5 bits (145), Expect = 4e-10
Identities = 43/125 (34%), Positives = 70/125 (55%), Gaps = 7/125 (5%)
Query: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 70
IAI+G+PNVGKS+L N+L ++I+ITS A TTR ++ +DT G+ +
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70
Query: 71 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSDEDLKLFREVFKINPNCFLVINKID 126
+ I L KAA S +L+++VV+G D+++ L ++ + L +NK+D
Sbjct: 71 --KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVL-NKLREGKAPVILAVNKVD 127
Query: 127 NDKEK 131
N +EK
Sbjct: 128 NVQEK 132
Score = 47.4 bits (111), Expect = 3e-06
Identities = 45/179 (25%), Positives = 79/179 (43%), Gaps = 18/179 (10%)
Query: 199 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 258
+ I+GR NVGKS+LLN L ++ S+ S A TT I G + +VDT G+ H
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL-HME 69
Query: 259 KILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILVLNKWD- 317
+ I + + ++ + + V++ + DE + + + +IL +NK D
Sbjct: 70 EKRAINRLMNKAASSSIGDVELVIFVVE-GTRWTPDDEMVLNKLREGKAPVILAVNKVDN 128
Query: 318 ----IRYAPYEEIIATLKRKFRFLEYAP--------VITTSCLKARHIDEIKHKIIEVY 364
P+ + +A+ + FL+ P V T + + +H+ E H E Y
Sbjct: 129 VQEKADLLPHLQFLAS---QMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDY 184
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 40.8 bits (94), Expect = 3e-04
Identities = 38/159 (23%), Positives = 76/159 (46%), Gaps = 25/159 (15%)
Query: 1 MNTSHKTLKTIAILGQPNVGKSSLFNRLARERIA------ITSDFAGTTRDINKRKIALN 54
M++ K + + ILG VGK+SL +R ++ + I +DF ++ K+A
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVA-- 58
Query: 55 GHEVELLDTGGMAKDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKI 114
+++ DT G + ++L + + +D + V D + S E++K +R+ F +
Sbjct: 59 --TMQVWDTAG-------QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV 109
Query: 115 NPNC-------FLVI-NKIDNDKEKERAYAFSSFGMPKS 145
+ N F+++ NKID ++ K+ S+ + KS
Sbjct: 110 HANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS 148
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 34.7 bits (78), Expect = 0.023
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 70
I +LG N GK++L +LA E I+ + T+ N + + G ++ + D GG K
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHIT----PTQGFNIKSVQSQGFKLNVWDIGGQRK-- 72
Query: 71 LLSKEIKALNLKAAQMSDLILYVVD 95
I+ + +D+++YV+D
Sbjct: 73 -----IRPYWRSYFENTDILIYVID 92
>pdb|821P| C-H-Ras P21 Protein (Residues 1 - 166) Mutant With Gly 12 Replaced
By Pro (G12p) Complex With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1JAI| H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'-[beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1PLL| C-H-Ras P21 Protein Mutant With Gly 12 Replaced By Pro (G12p)
Complexed With Guanosine-Diphosphate
pdb|1PLJ| C-H-Ras P21 Protein Mutant With Gly 12 Replaced By Pro (G12p)
Complexed With P3-1-(2-Nitrophenyl)ethyl-
Guanosine-5'-(B,G-Imido)-Triphosphate
Length = 166
Score = 33.9 bits (76), Expect = 0.039
Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 26/147 (17%)
Query: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHE--VELLDTGGMAK 68
+ ++G P VGKS+L +L + ++ T D ++++ ++G +++LDT G
Sbjct: 6 LVVVGAPGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG--- 60
Query: 69 DALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFK------------INP 116
+E A+ + + + L V + S ED+ +RE K +
Sbjct: 61 ----QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 117 NCFLVINKIDNDKEKERAYAFSSFGMP 143
C L +++ + ++ A S+G+P
Sbjct: 117 KCDLAARTVESRQAQDLA---RSYGIP 140
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 33.9 bits (76), Expect = 0.039
Identities = 34/142 (23%), Positives = 65/142 (44%), Gaps = 11/142 (7%)
Query: 6 KTLKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIAL-NGHEVELLDTG 64
K L + ++G P+VGKS+L + ++ + I +D+ TT N + +G D
Sbjct: 156 KVLADVGLVGFPSVGKSTLLSVVSSAKPKI-ADYHFTTLVPNLGXVETDDGRSFVXADLP 214
Query: 65 GMAKDALLSKEIKALNLKAAQMSDLILYVVDGKSI----PSDEDLKLFREVFKINPNC-- 118
G+ + A + L+ + + +I++V+D + P D+ L + +E+ + N
Sbjct: 215 GLIEGAHQGVGLGHQFLRHIERTRVIVHVIDXSGLEGRDPYDDYLTINQELSEYNLRLTE 274
Query: 119 ---FLVINKIDNDKEKERAYAF 137
+V NK D + E AF
Sbjct: 275 RPQIIVANKXDXPEAAENLEAF 296
>pdb|1JAH| H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'-[beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK| C-H-Ras P21 Protein Mutant With Gly 12 Replaced By Pro (G12p)
Complexed With Guanosine-Triphosphate
Length = 166
Score = 33.5 bits (75), Expect = 0.051
Identities = 25/105 (23%), Positives = 50/105 (46%), Gaps = 11/105 (10%)
Query: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHE--VELLDTGGMAK 68
+ ++G P VGKS+L +L + ++ T D ++++ ++G +++LDT G
Sbjct: 6 LVVVGAPGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG--- 60
Query: 69 DALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFK 113
+E A+ + + + L V + S ED+ +RE K
Sbjct: 61 ----QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 30.4 bits (67), Expect = 0.43
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKD 69
TI + G+ VGKSS N + ER+ S F + G + ++DT G+ +
Sbjct: 41 TILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLIEG 100
Query: 70 ALLSKEIKALNLKAA----QMSDLILYV 93
++ ALN+ + + D++LYV
Sbjct: 101 GYIND--XALNIIKSFLLDKTIDVLLYV 126
>pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
Length = 393
Score = 28.1 bits (61), Expect = 2.2
Identities = 50/194 (25%), Positives = 74/194 (37%), Gaps = 23/194 (11%)
Query: 197 IQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDET-------ILIGDQKICFV 249
+ VG IG V+ GK++L A+T A D ID I I + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAAITTVLAKTYGG-AARAFDQIDNAPEEKARGITINTSHVEY- 69
Query: 250 DTAGIRHRGKI--LGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSL 307
DT RH + G Y A + L+V P + E I
Sbjct: 70 DTP-TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 128
Query: 308 GIILVLNKWDIRYAPYEEIIATLKRKFRFL--------EYAPVITTSCLKARHID-EIKH 358
II+ LNK D+ EE++ ++ + R L + P++ S LKA D E +
Sbjct: 129 YIIVFLNKCDM--VDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEA 186
Query: 359 KIIEVYECFSKRIP 372
KI+E+ IP
Sbjct: 187 KILELAGFLDSYIP 200
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
Length = 393
Score = 28.1 bits (61), Expect = 2.2
Identities = 50/194 (25%), Positives = 74/194 (37%), Gaps = 23/194 (11%)
Query: 197 IQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDET-------ILIGDQKICFV 249
+ VG IG V+ GK++L A+T A D ID I I + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAAITTVLAKTYGG-AARAFDQIDNAPEEKARGITINTSHVEY- 69
Query: 250 DTAGIRHRGKI--LGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSL 307
DT RH + G Y A + L+V P + E I
Sbjct: 70 DTP-TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 128
Query: 308 GIILVLNKWDIRYAPYEEIIATLKRKFRFL--------EYAPVITTSCLKARHID-EIKH 358
II+ LNK D+ EE++ ++ + R L + P++ S LKA D E +
Sbjct: 129 YIIVFLNKCDM--VDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEA 186
Query: 359 KIIEVYECFSKRIP 372
KI+E+ IP
Sbjct: 187 KILELAGFLDSYIP 200
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 28.1 bits (61), Expect = 2.2
Identities = 50/194 (25%), Positives = 74/194 (37%), Gaps = 23/194 (11%)
Query: 197 IQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDET-------ILIGDQKICFV 249
+ VG IG V+ GK++L A+T A D ID I I + +
Sbjct: 4 VNVGTIGHVDHGKTTLTAAITTVLAKTYGG-AARAFDQIDNAPEEKARGITINTSHVEY- 61
Query: 250 DTAGIRHRGKI--LGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSL 307
DT RH + G Y A + L+V P + E I
Sbjct: 62 DTP-TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 120
Query: 308 GIILVLNKWDIRYAPYEEIIATLKRKFRFL--------EYAPVITTSCLKARHID-EIKH 358
II+ LNK D+ EE++ ++ + R L + P++ S LKA D E +
Sbjct: 121 YIIVFLNKCDM--VDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEA 178
Query: 359 KIIEVYECFSKRIP 372
KI+E+ IP
Sbjct: 179 KILELAGFLDSYIP 192
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 28.1 bits (61), Expect = 2.2
Identities = 50/194 (25%), Positives = 74/194 (37%), Gaps = 23/194 (11%)
Query: 197 IQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDET-------ILIGDQKICFV 249
+ VG IG V+ GK++L A+T A D ID I I + +
Sbjct: 13 VNVGTIGHVDHGKTTLTAAITTVLAKTYGG-AARAFDQIDNAPEEKARGITINTSHVEY- 70
Query: 250 DTAGIRHRGKI--LGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSL 307
DT RH + G Y A + L+V P + E I
Sbjct: 71 DTP-TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 129
Query: 308 GIILVLNKWDIRYAPYEEIIATLKRKFRFL--------EYAPVITTSCLKARHID-EIKH 358
II+ LNK D+ EE++ ++ + R L + P++ S LKA D E +
Sbjct: 130 YIIVFLNKCDM--VDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEA 187
Query: 359 KIIEVYECFSKRIP 372
KI+E+ IP
Sbjct: 188 KILELAGFLDSYIP 201
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 27.7 bits (60), Expect = 2.8
Identities = 16/44 (36%), Positives = 26/44 (58%), Gaps = 2/44 (4%)
Query: 190 NALEEEIIQVGIIGRVNVGKSSLLNALTKKER--SLVSSVAGTT 231
+A+ + ++ V I+G GKS L+N L K++ SL S+V T
Sbjct: 32 SAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHT 75
>pdb|1LW7|A Chain A, Nadr Protein From Haemophilus Influenzae
Length = 365
Score = 27.3 bits (59), Expect = 3.7
Identities = 13/21 (61%), Positives = 16/21 (75%)
Query: 9 KTIAILGQPNVGKSSLFNRLA 29
KT+AILG + GKS L N+LA
Sbjct: 171 KTVAILGGESSGKSVLVNKLA 191
>pdb|1KFD| Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7) Complexed With
Dctp
pdb|1DPI| DNA Polymerase I (Klenow Fragment) (E.C.2.7.7.7) - dCMP Complex
Length = 605
Score = 26.9 bits (58), Expect = 4.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 17 PNVGKSSLFNRLARERIAITSDFAGTTRDINKR 49
P++ S+ R A ER AI + GT DI KR
Sbjct: 503 PDIKSSNGARRAAAERAAINAPMQGTAADIIKR 535
>pdb|1KLN|A Chain A, Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7) Mutant
With Asp 355 Replaced By Ala (D355a) Complexed With Dna
Length = 605
Score = 26.9 bits (58), Expect = 4.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 17 PNVGKSSLFNRLARERIAITSDFAGTTRDINKR 49
P++ S+ R A ER AI + GT DI KR
Sbjct: 503 PDIKSSNGARRAAAERAAINAPMQGTAADIIKR 535
>pdb|1E3D|B Chain B, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
pdb|1E3D|D Chain D, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
Length = 542
Score = 26.9 bits (58), Expect = 4.8
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 4 SHKTLKTI--AILGQPNVGKSSLFNRLAR 30
+HKT+K A+LG+ N+G +LF+ L R
Sbjct: 389 NHKTIKPTIDAVLGKLNLGPEALFSTLGR 417
>pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
Manganese
pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
Only
pdb|1KFS|A Chain A, All-Oxygen Dna Complexed To The 3'-5' Exonuclease Of Dna
Polymerase I From E. Coli
pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Short Dna Fragment Carrying 2'-0-
Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
pdb|1KRP|A Chain A, Rp Isomer Phosphorothioate Dna Complexed To The 3'-5'
Exonuclease Of Dna Polymerase I From E. Coli
pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
And Europium (Iii) Ion
pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
pdb|1KSP|A Chain A, Sp Isomer Phosphorothioate Dna Complexed To The 3'-5'
Exonuclease Of Dna Polymerase I From E. Coli
pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
Manganese
pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna Tetramer Carrying
2'-O-(3-Aminopropyl)- Rna Modification
5'-D(Tt)-Ap(U)-D(T)-3'
Length = 605
Score = 26.9 bits (58), Expect = 4.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 17 PNVGKSSLFNRLARERIAITSDFAGTTRDINKR 49
P++ S+ R A ER AI + GT DI KR
Sbjct: 503 PDIKSSNGARRAAAERAAINAPMQGTAADIIKR 535
>pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna
Length = 605
Score = 26.9 bits (58), Expect = 4.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 17 PNVGKSSLFNRLARERIAITSDFAGTTRDINKR 49
P++ S+ R A ER AI + GT DI KR
Sbjct: 503 PDIKSSNGARRAAAERAAINAPMQGTAADIIKR 535
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|1AL6| Chicken Citrate Synthase Complex With N-Hydroxyamido-Coa And
Oxaloacetate
pdb|6CSC|B Chain B, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
Length = 437
Score = 26.9 bits (58), Expect = 4.8
Identities = 13/31 (41%), Positives = 17/31 (53%)
Query: 97 KSIPSDEDLKLFREVFKINPNCFLVINKIDN 127
K +PSD KL +++KI PN L K N
Sbjct: 339 KHLPSDPMFKLVAQLYKIVPNVLLEQGKAKN 369
>pdb|1CSH| Citrate Synthase (E.C.4.1.3.7) Complexed With Oxaloacetate And
Amidocarboxymethyldethia Coenzyme A
pdb|1CSI| Citrate Synthase (E.C.4.1.3.7) Complexed With Oxaloacetate And
Carboxymethyldethia Coenzyme A
pdb|1CSR| Mol_id: 1; Molecule: Citrate Synthase; Chain: Null; Ec: 4.1.3.7;
Heterogen: Oxaloacetate; Heterogen:
Alpha-Fluoro-Amidocarboxymethyldethia Coenzyme A
pdb|1CSS| Mol_id: 1; Molecule: Citrate Synthase; Chain: Null; Ec: 4.1.3.7;
Heterogen: Oxaloacetate; Heterogen:
Alpha-Fluoro-Carboxymethyldethia Coenzyme A
pdb|1AMZ| Chicken Citrate Synthase Complex With Nitromethylde-Coa And Malate
Length = 435
Score = 26.9 bits (58), Expect = 4.8
Identities = 13/31 (41%), Positives = 17/31 (53%)
Query: 97 KSIPSDEDLKLFREVFKINPNCFLVINKIDN 127
K +PSD KL +++KI PN L K N
Sbjct: 337 KHLPSDPMFKLVAQLYKIVPNVLLEQGKAKN 367
>pdb|1JWG|A Chain A, Vhs Domain Of Human Gga1 Complexed With Cation-Independent
M6pr C-Terminal Peptide
pdb|1JWG|B Chain B, Vhs Domain Of Human Gga1 Complexed With Cation-Independent
M6pr C-Terminal Peptide
pdb|1JWF|A Chain A, Crystal Structure Of Human Gga1 Vhs Domain
Length = 147
Score = 26.6 bits (57), Expect = 6.3
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 333 KFRFL-EYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIP 372
KFRFL E V++ L +R +++K+KI+E+ ++ +P
Sbjct: 87 KFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 127
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 26.6 bits (57), Expect = 6.3
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 9 KTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK 68
KT+A++G+ GKS++ + + R DI++ +I ++GH++ +
Sbjct: 370 KTVALVGRSGSGKSTIASLITR------------FYDIDEGEILMDGHDLREYTLASLRN 417
Query: 69 D-ALLSKEIKALN 80
AL+S+ + N
Sbjct: 418 QVALVSQNVHLFN 430
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
Length = 473
Score = 26.2 bits (56), Expect = 8.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 207 VGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIG 242
+GK S+ + + ++ R LV + T P D T ++G
Sbjct: 118 MGKRSIEDRIQEEARCLVEELRKTNASPCDPTFILG 153
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,369,344
Number of Sequences: 13198
Number of extensions: 94431
Number of successful extensions: 259
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 29
length of query: 458
length of database: 2,899,336
effective HSP length: 91
effective length of query: 367
effective length of database: 1,698,318
effective search space: 623282706
effective search space used: 623282706
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)