BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645454|ref|NP_207628.1| histone-like DNA-binding
protein HU (hup) [Helicobacter pylori 26695]
(94 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HUE|A Chain A, Histone-Like Protein >gi|1311346|pdb|1H... 70 3e-14
pdb|1B8Z|A Chain A, Hu From Thermotoga Maritima >gi|7245987... 70 4e-14
pdb|1IHF|A Chain A, Crystal Structure Of An Ihf-Dna Complex... 56 6e-10
pdb|1IHF|B Chain B, Crystal Structure Of An Ihf-Dna Complex... 52 1e-08
pdb|1WTU|A Chain A, Transcription Factor 1, Nmr, Minimized ... 35 0.001
pdb|1EXE|A Chain A, Solution Structure Of A Mutant Of Trans... 35 0.001
pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 An... 27 0.48
pdb|1SXL| Sex-Lethal Protein (C-Terminus, Or Second Rna-B... 27 0.48
pdb|1JJI|A Chain A, The Crystal Structure Of A Hyper-Thermo... 27 0.48
pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant F... 26 0.81
pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX >gi|49298... 26 0.81
pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT ... 26 0.81
pdb|1K8A|4 Chain 4, Co-Crystal Structure Of Carbomycin A Bo... 26 0.81
pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Mu... 25 1.8
pdb|1IQV|A Chain A, Crystal Structure Analysis Of The Archa... 24 2.4
pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavo... 24 3.1
pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant F... 24 3.1
pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant F... 24 3.1
pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frig... 24 3.1
pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant F... 24 3.1
pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frig... 24 3.1
pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant F... 23 4.0
pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glyci... 23 5.3
pdb|1H1L|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiel... 23 5.3
pdb|1B08|A Chain A, Lung Surfactant Protein D (Sp-D) (Fragm... 23 6.9
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Fo... 22 9.0
>pdb|1HUE|A Chain A, Histone-Like Protein
pdb|1HUE|B Chain B, Histone-Like Protein
pdb|1HUU|A Chain A, Dna-Binding Protein Hu From Bacillus Stearothermophilus
pdb|1HUU|B Chain B, Dna-Binding Protein Hu From Bacillus Stearothermophilus
pdb|1HUU|C Chain C, Dna-Binding Protein Hu From Bacillus Stearothermophilus
Length = 90
Score = 70.5 bits (171), Expect = 3e-14
Identities = 37/91 (40%), Positives = 55/91 (59%), Gaps = 1/91 (1%)
Query: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60
MNK E I+ V E SK++A +A+ A ++ AL KG+ V+LIGFG FE E+ ++
Sbjct: 1 MNKTELINAVAETSGL-SKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARK 59
Query: 61 GKVPGSDKTYKTEDKRVPKFKPGKTLKQKVE 91
G+ P + + + +VP FKPGK LK V+
Sbjct: 60 GRNPQTGEEMEIPASKVPAFKPGKALKDAVK 90
>pdb|1B8Z|A Chain A, Hu From Thermotoga Maritima
pdb|1B8Z|B Chain B, Hu From Thermotoga Maritima
Length = 90
Score = 70.1 bits (170), Expect = 4e-14
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 1 MNKAEFIDLV-KEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGK 59
MNK E ID V K+AG K++ + + + AL+KGE V+++GFG FE + +
Sbjct: 1 MNKKELIDRVAKKAGA--KKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAAR 58
Query: 60 EGKVPGSDKTYKTEDKRVPKFKPGKTLKQKVE 91
+G P + K +++VPKFKPGK LK+KV+
Sbjct: 59 KGVNPQTRKPITIPERKVPKFKPGKALKEKVK 90
>pdb|1IHF|A Chain A, Crystal Structure Of An Ihf-Dna Complex: A
Protein-Induced Dna U-Turn
Length = 99
Score = 56.2 bits (134), Expect = 6e-10
Identities = 27/74 (36%), Positives = 43/74 (57%)
Query: 18 SKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKEGKVPGSDKTYKTEDKRV 77
SKR+A+E + F + AL GE V+L GFG F+ ++ + G+ P + + +RV
Sbjct: 19 SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRV 78
Query: 78 PKFKPGKTLKQKVE 91
F+PG+ LK +VE
Sbjct: 79 VTFRPGQKLKSRVE 92
>pdb|1IHF|B Chain B, Crystal Structure Of An Ihf-Dna Complex: A
Protein-Induced Dna U-Turn
Length = 94
Score = 52.0 bits (123), Expect = 1e-08
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60
M K+E I+ + + + E+A+ + + L++GE +E+ GFG F + +
Sbjct: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 GKVPGSDKTYKTEDKRVPKFKPGKTLKQK 89
G+ P + + E K VP FKPGK L+ +
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89
>pdb|1WTU|A Chain A, Transcription Factor 1, Nmr, Minimized Average Structure
pdb|1WTU|B Chain B, Transcription Factor 1, Nmr, Minimized Average Structure
Length = 99
Score = 35.0 bits (79), Expect = 0.001
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60
MNK E I + + + ++ S + ET ++KG+ V+L GF + ++ ++
Sbjct: 1 MNKTELIKAIAQDTELTQVSVSKMLASFEKITTET-VAKGDKVQLTGFLNIKPVARQARK 59
Query: 61 GKVPGSDKTYKTEDKRVPKFKPGKTLKQKVE 91
G P + + + KPG++LK+ E
Sbjct: 60 GFNPQTQEALEIAPSVGVSVKPGESLKKAAE 90
>pdb|1EXE|A Chain A, Solution Structure Of A Mutant Of Transcription Factor
1.
pdb|1EXE|B Chain B, Solution Structure Of A Mutant Of Transcription Factor 1
Length = 99
Score = 35.0 bits (79), Expect = 0.001
Identities = 20/91 (21%), Positives = 44/91 (47%), Gaps = 1/91 (1%)
Query: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60
MNK E I + + ++ + +++F + ++KG+ V+L GF + ++ ++
Sbjct: 1 MNKTELIKAIAQDTGL-TQVSVSKMLASFEKIITETVAKGDKVQLTGFLNIKPVARQARK 59
Query: 61 GKVPGSDKTYKTEDKRVPKFKPGKTLKQKVE 91
G P + + + KPG++LK+ E
Sbjct: 60 GFNPQTQEALEIAPSVGVSVKPGESLKKAAE 90
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 26.6 bits (57), Expect = 0.48
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 8/45 (17%)
Query: 15 KYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGK 59
+YN + EA+EAISA + S+ SV L AE+ GK
Sbjct: 148 RYNKREEAQEAISALNNVIPEGGSQPLSVRL--------AEEHGK 184
>pdb|1SXL| Sex-Lethal Protein (C-Terminus, Or Second Rna-Binding Domain
(Rbd-2), Residues 199 - 294 Plus N-Terminal Met) (Nmr,
17 Structures)
Length = 97
Score = 26.6 bits (57), Expect = 0.48
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 8/45 (17%)
Query: 15 KYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGK 59
+YN + EA+EAISA + S+ SV L AE+ GK
Sbjct: 61 RYNKREEAQEAISALNNVIPEGGSQPLSVRL--------AEEHGK 97
>pdb|1JJI|A Chain A, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|B Chain B, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|C Chain C, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|D Chain D, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
Length = 311
Score = 26.6 bits (57), Expect = 0.48
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 4 AEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKEGKV 63
AE+ D + + +++S RE EAI+ LS+ E VE + E KG+ G +
Sbjct: 14 AEYFDSLPKFDQFSSAREYREAINRIYEERNRQLSQHERVE-----RVEDRTIKGRNGDI 68
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 25.8 bits (55), Expect = 0.81
Identities = 22/71 (30%), Positives = 36/71 (49%), Gaps = 5/71 (7%)
Query: 6 FIDLVKEAGKYNSKREAEEAISAFTL---AVETALSKGESVELIGFGKFETAEQKGKEGK 62
F++ + A K ++ A+ SA+ + +V +LSK + + IG G TA+ K GK
Sbjct: 395 FVNEITTADKASAAILAQTGKSAYLIFDDSVRKSLSKID--KYIGLGVAPTADSLVKLGK 452
Query: 63 VPGSDKTYKTE 73
+ G D TE
Sbjct: 453 MEGIDGKALTE 463
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 25.8 bits (55), Expect = 0.81
Identities = 13/31 (41%), Positives = 18/31 (57%)
Query: 15 KYNSKREAEEAISAFTLAVETALSKGESVEL 45
+YN + EA+EAISA + S+ SV L
Sbjct: 137 RYNKREEAQEAISALNNVIPEGGSQPLSVRL 167
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 25.8 bits (55), Expect = 0.81
Identities = 22/71 (30%), Positives = 36/71 (49%), Gaps = 5/71 (7%)
Query: 6 FIDLVKEAGKYNSKREAEEAISAFTL---AVETALSKGESVELIGFGKFETAEQKGKEGK 62
F++ + A K ++ A+ SA+ + +V +LSK + + IG G TA+ K GK
Sbjct: 395 FVNEITTADKASAAILAQTGKSAYLIFDDSVRKSLSKID--KYIGLGVAPTADSLVKLGK 452
Query: 63 VPGSDKTYKTE 73
+ G D TE
Sbjct: 453 MEGIDGKALTE 463
>pdb|1K8A|4 Chain 4, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|4 Chain 4, Co-Crystal Structure Of Tylosin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1KD1|4 Chain 4, Co-Crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|4 Chain 4, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|4 Chain 4, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1JJ2|2 Chain 2, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|2 Chain 2, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1FFK|Z Chain Z, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 92
Score = 25.8 bits (55), Expect = 0.81
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 58 GKEGKVPGSDKTYKTEDKRVPKFKPGKTLKQKVEEG 93
GK KVPG DK K D K++ G+ K + EG
Sbjct: 50 GKFSKVPGGDKPTKKTDL---KYRCGECGKAHLREG 82
>pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Hadacidin
pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
Synthetase Ligated With Gtp
pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp
pdb|1J4B|A Chain A, Recombinant Mouse-Muscle Adenylosuccinate Synthetase
Length = 457
Score = 24.6 bits (52), Expect = 1.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 69 TYKTEDKRVPKFKPGKTLKQKVE 91
+YK KR+P F + + QKVE
Sbjct: 378 SYKLNGKRIPYFPANQEILQKVE 400
>pdb|1IQV|A Chain A, Crystal Structure Analysis Of The Archaebacterial
Ribosomal Protein S7
Length = 218
Score = 24.3 bits (51), Expect = 2.4
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 3 KAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELI 46
K ++VKEA K KR + I A+E A + ++ ++
Sbjct: 100 KVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVM 143
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 23.9 bits (50), Expect = 3.1
Identities = 21/71 (29%), Positives = 35/71 (48%), Gaps = 5/71 (7%)
Query: 6 FIDLVKEAGKYNSKREAEEAISAFTL---AVETALSKGESVELIGFGKFETAEQKGKEGK 62
F++ + K ++ A+ SA+ + +V +LSK + + IG G TA+ K GK
Sbjct: 395 FVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKID--KYIGLGVAPTADSLVKLGK 452
Query: 63 VPGSDKTYKTE 73
+ G D TE
Sbjct: 453 MEGIDGKALTE 463
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 23.9 bits (50), Expect = 3.1
Identities = 21/71 (29%), Positives = 35/71 (48%), Gaps = 5/71 (7%)
Query: 6 FIDLVKEAGKYNSKREAEEAISAFTL---AVETALSKGESVELIGFGKFETAEQKGKEGK 62
F++ + K ++ A+ SA+ + +V +LSK + + IG G TA+ K GK
Sbjct: 395 FVNEITTKDKASAAILAQTGKSAYLIFDDSVRKSLSKID--KYIGLGVAPTADSLVKLGK 452
Query: 63 VPGSDKTYKTE 73
+ G D TE
Sbjct: 453 MEGIDGKALTE 463
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 23.9 bits (50), Expect = 3.1
Identities = 21/71 (29%), Positives = 35/71 (48%), Gaps = 5/71 (7%)
Query: 6 FIDLVKEAGKYNSKREAEEAISAFTL---AVETALSKGESVELIGFGKFETAEQKGKEGK 62
F++ + K ++ A+ SA+ + +V +LSK + + IG G TA+ K GK
Sbjct: 395 FVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKID--KYIGLGVAPTADSLVKLGK 452
Query: 63 VPGSDKTYKTE 73
+ G D TE
Sbjct: 453 MEGIDGKALTE 463
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
Length = 571
Score = 23.9 bits (50), Expect = 3.1
Identities = 21/71 (29%), Positives = 35/71 (48%), Gaps = 5/71 (7%)
Query: 6 FIDLVKEAGKYNSKREAEEAISAFTL---AVETALSKGESVELIGFGKFETAEQKGKEGK 62
F++ + K ++ A+ SA+ + +V +LSK + + IG G TA+ K GK
Sbjct: 395 FVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKID--KYIGLGVAPTADSLVKLGK 452
Query: 63 VPGSDKTYKTE 73
+ G D TE
Sbjct: 453 MEGIDGKALTE 463
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 23.9 bits (50), Expect = 3.1
Identities = 21/71 (29%), Positives = 35/71 (48%), Gaps = 5/71 (7%)
Query: 6 FIDLVKEAGKYNSKREAEEAISAFTL---AVETALSKGESVELIGFGKFETAEQKGKEGK 62
F++ + K ++ A+ SA+ + +V +LSK + + IG G TA+ K GK
Sbjct: 395 FVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKID--KYIGLGVAPTADSLVKLGK 452
Query: 63 VPGSDKTYKTE 73
+ G D TE
Sbjct: 453 MEGIDGKALTE 463
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 23.9 bits (50), Expect = 3.1
Identities = 21/71 (29%), Positives = 35/71 (48%), Gaps = 5/71 (7%)
Query: 6 FIDLVKEAGKYNSKREAEEAISAFTL---AVETALSKGESVELIGFGKFETAEQKGKEGK 62
F++ + K ++ A+ SA+ + +V +LSK + + IG G TA+ K GK
Sbjct: 395 FVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKID--KYIGLGVAPTADSLVKLGK 452
Query: 63 VPGSDKTYKTE 73
+ G D TE
Sbjct: 453 MEGIDGKALTE 463
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 23.5 bits (49), Expect = 4.0
Identities = 21/71 (29%), Positives = 35/71 (48%), Gaps = 5/71 (7%)
Query: 6 FIDLVKEAGKYNSKREAEEAISAFTL---AVETALSKGESVELIGFGKFETAEQKGKEGK 62
F++ + K ++ A+ SA+ + +V +LSK + + IG G TA+ K GK
Sbjct: 395 FVNEITTYDKASAAILAQTGKSAYLIFDDSVRKSLSKID--KYIGLGVAPTADSLVKLGK 452
Query: 63 VPGSDKTYKTE 73
+ G D TE
Sbjct: 453 MEGIDGKALTE 463
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 23.1 bits (48), Expect = 5.3
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 21 EAEEAISAFTLAVETALSKGESVELIGFGKFETAEQ------KGKEGKVPGSDKTYKTED 74
+ ++A+S T +E K + + G+GKF + + +G+ V G T
Sbjct: 90 QKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGS 149
Query: 75 KRVPKFKPGKTLKQK 89
K PG T+ +K
Sbjct: 150 D--VKSLPGVTIDEK 162
>pdb|1H1L|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
pdb|1H1L|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
pdb|1QH8|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH1|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
pdb|1QGU|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QH8|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QGU|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QH1|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
Length = 519
Score = 23.1 bits (48), Expect = 5.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 47 GFGKFETAEQKGKEGKVP 64
GF K TA+ +G+ GK+P
Sbjct: 201 GFAKTFTADYQGQPGKLP 218
>pdb|1B08|A Chain A, Lung Surfactant Protein D (Sp-D) (Fragment)
pdb|1B08|B Chain B, Lung Surfactant Protein D (Sp-D) (Fragment)
pdb|1B08|C Chain C, Lung Surfactant Protein D (Sp-D) (Fragment)
Length = 158
Score = 22.7 bits (47), Expect = 6.9
Identities = 13/39 (33%), Positives = 20/39 (50%)
Query: 12 EAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGK 50
EAG S R+ EA+ ++ A S+ + VEL G+
Sbjct: 3 EAGSVASLRQQVEALQGQVQHLQAAFSQYKKVELFPNGQ 41
>pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
Length = 699
Score = 22.3 bits (46), Expect = 9.0
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 40 GESVELIGFGKFETAEQKGKEGKVPGSDKTYKTEDKR 76
GE + IGFG +E E+ + + S + T R
Sbjct: 422 GEDMHTIGFGIYEVPEELSGQTNIHLSKNFFLTNRAR 458
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.305 0.127 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,425
Number of Sequences: 13198
Number of extensions: 19057
Number of successful extensions: 35
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 26
length of query: 94
length of database: 2,899,336
effective HSP length: 70
effective length of query: 24
effective length of database: 1,975,476
effective search space: 47411424
effective search space used: 47411424
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 46 (22.3 bits)