BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645455|ref|NP_207629.1| hypothetical protein
[Helicobacter pylori 26695]
(119 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of T... 26 1.4
pdb|1KB9|C Chain C, Yeast Cytochrome Bc1 Complex >gi|142777... 24 5.2
pdb|1BCC|C Chain C, Cytochrome Bc1 Complex From Chicken >gi... 24 5.2
pdb|2CAS| Canine Parvovirus Empty Capsid (Strain D) Viral... 23 8.8
pdb|1TDJ| Threonine Deaminase (Biosynthetic) From E. Coli 23 8.8
pdb|4DPV|Z Chain Z, Canine Parvovirus Strain D Viral Protei... 23 8.8
pdb|1C8D|A Chain A, Canine Panleukopenia Virus Empty Capsid... 23 8.8
pdb|1LD4|M Chain M, Placement Of The Structural Proteins In... 23 8.8
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 25.8 bits (55), Expect = 1.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 3 MRLHTAFFGINSLLVASLLISGCSLFKKRNTNA 35
+ LH +F + L++ ISG +F++ NT+A
Sbjct: 64 LHLHESFESMEELVMIFEFISGLDIFERINTSA 96
>pdb|1KB9|C Chain C, Yeast Cytochrome Bc1 Complex
pdb|1EZV|C Chain C, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|C Chain C, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|N Chain N, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 385
Score = 23.9 bits (50), Expect = 5.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 75 PVISSNPTNAIPNTPILTPNNVI 97
P +P N IP P++TP +++
Sbjct: 248 PNTLGHPDNYIPGNPLVTPASIV 270
>pdb|1BCC|C Chain C, Cytochrome Bc1 Complex From Chicken
pdb|2BCC|C Chain C, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3BCC|C Chain C, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
Length = 380
Score = 23.9 bits (50), Expect = 5.2
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 7 TAFFGINSLL---VASLLISGCSLFKKRNTNAQLIPPSANGLQAPIYPPTNFTPRKSIQP 63
T FF ++ LL +A + I + + +N L S++ + P +P +F +
Sbjct: 177 TRFFALHFLLPFAIAGITIIHLTFLHESGSNNPL-GISSDSDKIPFHPYYSFKDILGLTL 235
Query: 64 LPSPRLENN-DQPVISSNPTNAIPNTPILTPNNV 96
+ +P L P + +P N P P++TP ++
Sbjct: 236 MLTPFLTLALFSPNLLGDPENFTPANPLVTPPHI 269
>pdb|2CAS| Canine Parvovirus Empty Capsid (Strain D) Viral Protein 2
Length = 548
Score = 23.1 bits (48), Expect = 8.8
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 69 LENNDQPVISSNPTNAIPNTPILTPNNVIELNAW 102
+ N D+ ++ N + I+TP ++++ NAW
Sbjct: 48 VNNMDKTAVNGNMALDDIHAQIVTPWSLVDANAW 81
>pdb|1TDJ| Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 23.1 bits (48), Expect = 8.8
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 45 LQAPIYPPTNFTPRKSIQPLPSPRLEN 71
L+AP+Y TP + ++ L S RL+N
Sbjct: 21 LRAPVYEAAQVTPLQKMEKL-SSRLDN 46
>pdb|4DPV|Z Chain Z, Canine Parvovirus Strain D Viral Protein 2
pdb|1C8H|A Chain A, Canine Parvovirus Strain D Empty Capsid Structure At Ph
5.5
Length = 584
Score = 23.1 bits (48), Expect = 8.8
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 69 LENNDQPVISSNPTNAIPNTPILTPNNVIELNAW 102
+ N D+ ++ N + I+TP ++++ NAW
Sbjct: 84 VNNMDKTAVNGNMALDDIHAQIVTPWSLVDANAW 117
>pdb|1C8D|A Chain A, Canine Panleukopenia Virus Empty Capsid Structure
pdb|1IJS|P Chain P, Cpv(Strain D) Mutant A300d, Complex(Viral CoatDNA), VP2,
Ph7.5, T4 Degrees C
Length = 584
Score = 23.1 bits (48), Expect = 8.8
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 69 LENNDQPVISSNPTNAIPNTPILTPNNVIELNAW 102
+ N D+ ++ N + I+TP ++++ NAW
Sbjct: 84 VNNMDKTAVNGNMALDDIHAEIVTPWSLVDANAW 117
>pdb|1LD4|M Chain M, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|N Chain N, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|O Chain O, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|P Chain P, Placement Of The Structural Proteins In Sindbis Virus
Length = 439
Score = 23.1 bits (48), Expect = 8.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 5 LHTAFFGINSLLVASLLISGCSL 27
L F G +SLL+ L+I CS+
Sbjct: 410 LFALFGGASSLLIIGLMIFACSM 432
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.135 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 769,110
Number of Sequences: 13198
Number of extensions: 30147
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 8
length of query: 119
length of database: 2,899,336
effective HSP length: 77
effective length of query: 42
effective length of database: 1,883,090
effective search space: 79089780
effective search space used: 79089780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)