BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645456|ref|NP_207630.1| hypothetical protein
[Helicobacter pylori 26695]
(102 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin ... 27 0.45
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclop... 27 0.45
pdb|1AH5| Reduced Form Selenomethionine-Labelled Hydroxym... 25 1.0
pdb|1PDA| Porphobilinogen Deaminase (E.C.4.3.1.8) 25 1.3
pdb|2YPN|A Chain A, Hydroxymethylbilane Synthase 25 1.3
pdb|1YPN| Reduced Form Hydroxymethylbilane Synthase (K59q... 25 1.3
pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb... 23 5.0
pdb|1GAI| Glucoamylase-471 Complexed With D-Gluco-Dihydro... 23 6.5
pdb|1GAH| Glucoamylase-471 Complexed With Acarbose 23 6.5
pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna >... 23 6.5
pdb|3GLY| Glucoamylase-471 (1,4-Alpha-D-Glucan Glucohydro... 23 6.5
pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Huma... 23 6.5
pdb|1CJ4|A Chain A, Mutant Q34t Of Para-Hydroxybenzoate Hyd... 22 8.5
pdb|1AIN| Annexin I 22 8.5
pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form ... 22 8.5
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 26.6 bits (57), Expect = 0.45
Identities = 14/37 (37%), Positives = 20/37 (53%)
Query: 27 DGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTRVNA 63
DGY GE +++ + +KD LQ V KT +NA
Sbjct: 104 DGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINA 140
>pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(Tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
Length = 169
Score = 26.6 bits (57), Expect = 0.45
Identities = 14/37 (37%), Positives = 20/37 (53%)
Query: 27 DGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTRVNA 63
DGY GE +++ + +KD LQ V KT +NA
Sbjct: 103 DGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINA 139
>pdb|1AH5| Reduced Form Selenomethionine-Labelled Hydroxymethylbilane
Synthase Determined By Mad
Length = 313
Score = 25.4 bits (54), Expect = 1.0
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 32 LGEKMYGIRVNAQDTVKDMVLQNSVIKTRVNALIRNAEITETIYKDGLCQV---SMELKL 88
+G+ GI D+ +L + + AL AE +G CQV S +
Sbjct: 196 VGQGAVGIECRLDDSRTRELL--AALNHHETALRVTAERAXNTRLEGGCQVPIGSYAELI 253
Query: 89 DGRIWYRILSGA 100
DG IW R L GA
Sbjct: 254 DGEIWLRALVGA 265
>pdb|1PDA| Porphobilinogen Deaminase (E.C.4.3.1.8)
Length = 296
Score = 25.0 bits (53), Expect = 1.3
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 32 LGEKMYGIRVNAQDTVKDMVLQNSVIKTRVNALIRNAEITETIYKDGLCQV---SMELKL 88
+G+ GI D+ +L + + AL AE +G CQV S +
Sbjct: 185 VGQGAVGIECRLDDSRTRELL--AALNHHETALRVTAERAMNTRLEGGCQVPIGSYAELI 242
Query: 89 DGRIWYRILSGA 100
DG IW R L GA
Sbjct: 243 DGEIWLRALVGA 254
>pdb|2YPN|A Chain A, Hydroxymethylbilane Synthase
Length = 313
Score = 25.0 bits (53), Expect = 1.3
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 32 LGEKMYGIRVNAQDTVKDMVLQNSVIKTRVNALIRNAEITETIYKDGLCQV---SMELKL 88
+G+ GI D+ +L + + AL AE +G CQV S +
Sbjct: 196 VGQGAVGIECRLDDSRTRELL--AALNHHETALRVTAERAMNTRLEGGCQVPIGSYAELI 253
Query: 89 DGRIWYRILSGA 100
DG IW R L GA
Sbjct: 254 DGEIWLRALVGA 265
>pdb|1YPN| Reduced Form Hydroxymethylbilane Synthase (K59q Mutant) Crystal
Structure After 2 Hours In A Flow Cell Determined By
Time-Resolved Laue Diffraction
Length = 313
Score = 25.0 bits (53), Expect = 1.3
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 32 LGEKMYGIRVNAQDTVKDMVLQNSVIKTRVNALIRNAEITETIYKDGLCQV---SMELKL 88
+G+ GI D+ +L + + AL AE +G CQV S +
Sbjct: 196 VGQGAVGIECRLDDSRTRELL--AALNHHETALRVTAERAMNTRLEGGCQVPIGSYAELI 253
Query: 89 DGRIWYRILSGA 100
DG IW R L GA
Sbjct: 254 DGEIWLRALVGA 265
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 23.1 bits (48), Expect = 5.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 75 YKDGLCQVSMELKLDGRIWYRI 96
YK+ V + ++G++WYRI
Sbjct: 557 YKNQKLIVDCQATIEGQLWYRI 578
>pdb|1GAI| Glucoamylase-471 Complexed With D-Gluco-Dihydroacarbose
Length = 472
Score = 22.7 bits (47), Expect = 6.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 8 ESTISPSQALALAKRAAIVDGYRQL 32
+ST P ALA +VD +R +
Sbjct: 263 DSTFQPCSPRALANHKEVVDSFRSI 287
>pdb|1GAH| Glucoamylase-471 Complexed With Acarbose
Length = 471
Score = 22.7 bits (47), Expect = 6.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 8 ESTISPSQALALAKRAAIVDGYRQL 32
+ST P ALA +VD +R +
Sbjct: 263 DSTFQPCSPRALANHKEVVDSFRSI 287
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna
pdb|1AN2|C Chain C, Recognition By Max Of Its Cognate Dna
Length = 86
Score = 22.7 bits (47), Expect = 6.5
Identities = 15/52 (28%), Positives = 25/52 (47%)
Query: 13 PSQALALAKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTRVNAL 64
PS A RA I+D + + M Q + D+ QN++++ +V AL
Sbjct: 30 PSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 81
>pdb|3GLY| Glucoamylase-471 (1,4-Alpha-D-Glucan Glucohydrolase) (E.C.3.2.1.3)
pdb|1GLM| Glucoamylase-471 (1,4-Alpha-D-Glucan Glucohydrolase) (E.C.3.2.1.3)
pdb|1AGM| Glucoamylase-471 (Glucan 1,4-Alpha-Glucosidase, Residues 1 - 471)
(E.C.3.2.1.3) Complexed With Acarbose
pdb|1DOG| Glucoamylase-471 (Glucan 1,4-Alpha-Glucosidase) (E.C.3.2.1.3)
Complexed With 1-Deoxynojirimycin
Length = 470
Score = 22.7 bits (47), Expect = 6.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 8 ESTISPSQALALAKRAAIVDGYRQL 32
+ST P ALA +VD +R +
Sbjct: 263 DSTFQPCSPRALANHKEVVDSFRSI 287
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna
Complex: New Insights Into Mechanisms Of
Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna
Complex: New Insights Into Mechanisms Of
Transcriptional Control
Length = 150
Score = 22.7 bits (47), Expect = 6.5
Identities = 15/52 (28%), Positives = 25/52 (47%)
Query: 13 PSQALALAKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTRVNAL 64
PS A RA I+D + + M Q + D+ QN++++ +V AL
Sbjct: 41 PSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 92
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 22.3 bits (46), Expect = 8.5
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 46 TVKDMVL---QNSVIKTRVNALIRNAEITETIYKDGLCQVSMELKLDG---RIWYRILSG 99
T D VL + V++ + L+R A + + +DGL +E+ G RI + LSG
Sbjct: 34 TTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSG 93
Query: 100 AR 101
+
Sbjct: 94 GK 95
>pdb|1AIN| Annexin I
Length = 314
Score = 22.3 bits (46), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 2 GMGVAPESTISPSQALALAKRAAIVDG 28
G V+P T +PS +A +A +V G
Sbjct: 1 GSAVSPYPTFNPSSDVAALHKAIMVKG 27
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 22.3 bits (46), Expect = 8.5
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 11 ISPSQALALAKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTR 60
I PS AL +RA G ++ + + ++ + +D +Q ++K +
Sbjct: 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.134 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,578
Number of Sequences: 13198
Number of extensions: 14853
Number of successful extensions: 55
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 15
length of query: 102
length of database: 2,899,336
effective HSP length: 78
effective length of query: 24
effective length of database: 1,869,892
effective search space: 44877408
effective search space used: 44877408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)