BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645457|ref|NP_207631.1| hypothetical protein
[Helicobacter pylori 26695]
         (205 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1IQC|A  Chain A, Crystal Structure Of Di-Heme Peroxidase...    27  2.2
pdb|1DT6|A  Chain A, Structure Of Mammalian Cytochrome P450 2c5    26  3.7

>pdb|1IQC|A Chain A, Crystal Structure Of Di-Heme Peroxidase From Nitrosomonas
           Europaea
 pdb|1IQC|B Chain B, Crystal Structure Of Di-Heme Peroxidase From Nitrosomonas
           Europaea
 pdb|1IQC|C Chain C, Crystal Structure Of Di-Heme Peroxidase From Nitrosomonas
           Europaea
 pdb|1IQC|D Chain D, Crystal Structure Of Di-Heme Peroxidase From Nitrosomonas
           Europaea
          Length = 308

 Score = 26.6 bits (57), Expect = 2.2
 Identities = 26/82 (31%), Positives = 37/82 (44%), Gaps = 5/82 (6%)

Query: 119 FGKVSYGD---LFDDIVLGRDIFKGLG--KRHLTPEYVIQRFQKSGEIILYERKNGLISF 173
           F K   GD   L  D + G ++FKG G  + H  P      +QK G    YE KN     
Sbjct: 156 FDKWLEGDKNALNQDELEGYNLFKGSGCVQCHNGPAVGGSSYQKMGVFKPYETKNPAAGR 215

Query: 174 QNLTQKIAIRIEPYEPSLQDLE 195
            ++T   A R     P+L+++E
Sbjct: 216 MDVTGNEADRNVFKVPTLRNIE 237



>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
          Length = 473

 Score = 25.8 bits (55), Expect = 3.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 56  RLIYINTPVFRFYDYGTIKTDKDHNIEVTLYKLSQRVGDIY 96
           +L+ +N P   F D   IK ++++N+E TL  L   V D++
Sbjct: 235 KLLDVNNPR-DFIDCFLIKMEQENNLEFTLESLVIAVSDLF 274



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.324    0.140    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,155,803
Number of Sequences: 13198
Number of extensions: 45076
Number of successful extensions: 143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 2
length of query: 205
length of database: 2,899,336
effective HSP length: 84
effective length of query: 121
effective length of database: 1,790,704
effective search space: 216675184
effective search space used: 216675184
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)