BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644715|ref|NP_206885.1| hypothetical protein
[Helicobacter pylori 26695]
(62 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LVO|A Chain A, Structure Of Coronavirus Main Proteinas... 25 1.7
pdb|1QLA|B Chain B, Respiratory Complex Ii-Like Fumarate Re... 23 6.4
>pdb|1LVO|A Chain A, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|B Chain B, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|C Chain C, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|D Chain D, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|E Chain E, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|F Chain F, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
Length = 302
Score = 25.0 bits (53), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (56%), Gaps = 1/35 (2%)
Query: 20 FLGLVVVLLMMINLYMLINQINASAQMSHQIKKIE 54
FLG+V +NL + +NQ+N + H+ K I+
Sbjct: 73 FLGVVSARYKGVNLVLKVNQVNPNTP-EHKFKSIK 106
>pdb|1QLA|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLA|E Chain E, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|E Chain E, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|H Chain H, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|K Chain K, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 239
Score = 23.1 bits (48), Expect = 6.4
Identities = 9/17 (52%), Positives = 11/17 (63%)
Query: 44 AQMSHQIKKIEERLNQE 60
AQ H I K+EER+ E
Sbjct: 124 AQKEHDISKLEERIEPE 140
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.133 0.328
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,017
Number of Sequences: 13198
Number of extensions: 4337
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 62
length of database: 2,899,336
effective HSP length: 38
effective length of query: 24
effective length of database: 2,397,812
effective search space: 57547488
effective search space used: 57547488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)