BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645460|ref|NP_207634.1| pantothenate metabolism
flavoprotein (dfp) [Helicobacter pylori 26695]
(425 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E20|A Chain A, The Fmn Binding Protein Athal3 88 2e-18
pdb|1G63|B Chain B, Peptidyl-Cysteine Decarboxylase Epid >g... 50 6e-07
pdb|1G5Q|A Chain A, Epid H67n Complexed With Substrate Pept... 47 4e-06
pdb|2EBN| Endo-Beta-N-Acetylglucosaminidase F1 (E.C.3.2.1... 28 2.0
pdb|1OPM|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-H... 26 7.5
pdb|1GP1|A Chain A, Glutathione Peroxidase (E.C.1.11.1.9) >... 26 9.7
>pdb|1E20|A Chain A, The Fmn Binding Protein Athal3
Length = 209
Score = 88.2 bits (217), Expect = 2e-18
Identities = 61/170 (35%), Positives = 88/170 (50%), Gaps = 6/170 (3%)
Query: 18 RVLLLVSGSIAAYKSLELVRLLFKSGASIQVVMSKGAKKFIKPLSFEALSHHKVLHDRNE 77
RVLL SGS+AA K L F A ++ V++K + F+ LS L L+ +
Sbjct: 21 RVLLAASGSVAAIKFGNLCHC-FTEWAEVRAVVTKSSLHFLDKLS---LPQEVTLYTDED 76
Query: 78 KWYYNHQNALHHNHIACAANADLLIFAPLSTNSLSKIAHALADNIVSATFLAC--ASPKI 135
+W ++ HI AD+L+ APLS N+L KIA L DN+++ A P
Sbjct: 77 EWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLF 136
Query: 136 LAPSMNTNMLNSPITQSNLKRLKDSNHIILDTKNALLACDTKGDGAMAEP 185
+AP+MNT M N+P T+ +L L + ++ LAC G+GAMAEP
Sbjct: 137 VAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEP 186
>pdb|1G63|B Chain B, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|F Chain F, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|A Chain A, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|G Chain G, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|H Chain H, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|I Chain I, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|J Chain J, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|L Chain L, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|C Chain C, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|E Chain E, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|K Chain K, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|D Chain D, Peptidyl-Cysteine Decarboxylase Epid
Length = 181
Score = 49.7 bits (117), Expect = 6e-07
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 90 NHIACAANADLLIFAPLSTNSLSKIAHALADNIVSATFLACASPKILAPSMNTNMLNSPI 149
NHI N + ++ P S N+++KIA+ + DN+++ L + P+MN M +P
Sbjct: 66 NHINIVENHEYILVLPASANTINKIANGICDNLLTTVCLTGYQKLFIFPNMNIRMWGNPF 125
Query: 150 TQSNLKRLKDSN 161
Q N+ LK+++
Sbjct: 126 LQKNIDLLKNND 137
>pdb|1G5Q|A Chain A, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|D Chain D, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|G Chain G, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|L Chain L, Epid H67n Complexed With Substrate Peptide Dsytc
Length = 181
Score = 47.0 bits (110), Expect = 4e-06
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 90 NHIACAANADLLIFAPLSTNSLSKIAHALADNIVSATFLACASPKILAPSMNTNMLNSPI 149
N+I N + ++ P S N+++KIA+ + DN+++ L + P+MN M +P
Sbjct: 66 NNINIVENHEYILVLPASANTINKIANGICDNLLTTVCLTGYQKLFIFPNMNIRMWGNPF 125
Query: 150 TQSNLKRLKDSN 161
Q N+ LK+++
Sbjct: 126 LQKNIDLLKNND 137
>pdb|2EBN| Endo-Beta-N-Acetylglucosaminidase F1 (E.C.3.2.1.96)
(Endoglycosidase F1, Endo F1)
Length = 289
Score = 28.1 bits (61), Expect = 2.0
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 293 LFNLAAISDYVPKTSFNYKLKKSEIGETLNIECVQNKDLLVSINPNQFV---KIGFKAED 349
LF+ ++D P + N+ LK S G+ L ++ V +L S N N K+
Sbjct: 12 LFSFTEVNDTNPLNNLNFTLKNS--GKPL-VDMV----VLFSANINYDAANDKVFVSNNP 64
Query: 350 NQQNAIKNAQNLLKPFKDNG 369
N Q+ + N LKP +D G
Sbjct: 65 NVQHLLTNRAKYLKPLQDKG 84
>pdb|1OPM|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Substrate
pdb|3PHM|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm)
pdb|1PHM| Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) From Rat
Length = 310
Score = 26.2 bits (56), Expect = 7.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 362 LKPFKDNGKDCSVVALNLIKDSRP 385
+ F+DN KDCS V+++L + +P
Sbjct: 132 ISAFRDNHKDCSGVSVHLTRVPQP 155
>pdb|1GP1|A Chain A, Glutathione Peroxidase (E.C.1.11.1.9)
pdb|1GP1|B Chain B, Glutathione Peroxidase (E.C.1.11.1.9)
Length = 198
Score = 25.8 bits (55), Expect = 9.7
Identities = 28/114 (24%), Positives = 45/114 (38%), Gaps = 21/114 (18%)
Query: 297 AAISDYVPKTSFNYKLKKSEIGETLNIECVQNKDLLVSINPNQFVKIGFKAEDNQQNAIK 356
AA++ P+T + + + GE N+ ++ K LL+ N G D Q +
Sbjct: 2 AALAAAAPRTVYAFSARPLAGGEPFNLSSLRGKVLLIE---NVASLXGTTVRDYTQ--MN 56
Query: 357 NAQNLLKP--------------FKDNGKDCSVVALNLIKDSRPFGSLENELWLF 396
+ Q L P ++N K+ + LN +K RP G E LF
Sbjct: 57 DLQRRLGPRGLVVLGFPCNQFGHQENAKNEEI--LNCLKYVRPGGGFEPNFMLF 108
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.132 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,213,593
Number of Sequences: 13198
Number of extensions: 84292
Number of successful extensions: 222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 6
length of query: 425
length of database: 2,899,336
effective HSP length: 91
effective length of query: 334
effective length of database: 1,698,318
effective search space: 567238212
effective search space used: 567238212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)