BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645461|ref|NP_207635.1| hypothetical protein
[Helicobacter pylori 26695]
(245 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F6Y|A Chain A, Mad Crystal Structure Analysis Of Methy... 27 2.2
pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor W... 27 2.8
pdb|1QCI|A Chain A, Low Temperature Structure Of Pokeweed A... 26 3.7
pdb|1GUP|A Chain A, Structure Of Nucleotidyltransferase Com... 26 4.8
pdb|1HXP|A Chain A, Nucleotide Transferase >gi|1943511|pdb|... 26 4.8
pdb|1SVC|P Chain P, Nfkb P50 Homodimer Bound To Dna 26 4.8
pdb|1HXQ|A Chain A, The Structure Of Nucleotidylated Galact... 26 4.8
pdb|1HXQ|B Chain B, The Structure Of Nucleotidylated Galact... 26 4.8
pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.... 25 6.3
pdb|1DBH|A Chain A, Dbl And Pleckstrin Homology Domains Fro... 25 6.3
>pdb|1F6Y|A Chain A, Mad Crystal Structure Analysis Of Methyltetrahydrofolate:
CorrinoidIRON-Sulfur Protein Methyltransferase (Metr)
pdb|1F6Y|B Chain B, Mad Crystal Structure Analysis Of Methyltetrahydrofolate:
CorrinoidIRON-Sulfur Protein Methyltransferase (Metr)
Length = 262
Score = 26.9 bits (58), Expect = 2.2
Identities = 12/32 (37%), Positives = 19/32 (58%)
Query: 202 TLQRTKEVLKEAQNTLLGFSSVEIVCEKTPML 233
TLQ+ K + A T+LG S+V C+ P++
Sbjct: 179 TLQQIKMLADPAPKTVLGLSNVSQNCQNRPLI 210
>pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|C Chain C, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K8T|A Chain A, Crystal Structure Analysis Of The Edema Factor
pdb|1K90|A Chain A, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|A Chain A, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K93|B Chain B, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K90|B Chain B, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
Length = 510
Score = 26.6 bits (57), Expect = 2.8
Identities = 31/130 (23%), Positives = 54/130 (40%), Gaps = 7/130 (5%)
Query: 87 KILDALDDLPVLEMKQI-------KEILSGKDNTPLKEYKELLSEKLIHAKSSQEFLNTA 139
KI LD L + E+K+ KEI +GK L+ ++ ++ + ++
Sbjct: 110 KIPLKLDHLRIEELKENGIILKGKKEIDNGKKYYLLESNNQVYEFRISDENNEVQYKTKE 169
Query: 140 NMLLSLQSQVLSFVVENERKKTFLQVKAKKQSVDFYALYPNLGEIGGVIYLKEKEKQLFL 199
+ L + +E K +K D +AL P+L EI I KE +K +
Sbjct: 170 GKITVLGEKFNWRNIEVMAKNVEGVLKPLTADYDLFALAPSLTEIKKQIPQKEWDKVVNT 229
Query: 200 KTTLQRTKEV 209
+L++ K V
Sbjct: 230 PNSLEKQKGV 239
>pdb|1QCI|A Chain A, Low Temperature Structure Of Pokeweed Antiviral Protein
Complexed With Adenine
pdb|1QCI|B Chain B, Low Temperature Structure Of Pokeweed Antiviral Protein
Complexed With Adenine
pdb|1D6A|A Chain A, Structure Of Pokeweed Antiviral Protein Complexed With
Guanine
pdb|1D6A|B Chain B, Structure Of Pokeweed Antiviral Protein Complexed With
Guanine
pdb|1QCJ|A Chain A, Low Temperature Complex Of Pokeweed Antiviral Protein With
Pteoric Acid
pdb|1QCJ|B Chain B, Low Temperature Complex Of Pokeweed Antiviral Protein With
Pteoric Acid
pdb|1QCG|A Chain A, Low Temperature Structure Of Pokeweed Antiviral Protein
pdb|1QCG|B Chain B, Low Temperature Structure Of Pokeweed Antiviral Protein
pdb|1PAF|A Chain A, Pokeweed Antiviral Protein
pdb|1PAF|B Chain B, Pokeweed Antiviral Protein
pdb|1PAG|A Chain A, Pokeweed Antiviral Protein Complex With Formycin
5'-Monophosphate
pdb|1PAG|B Chain B, Pokeweed Antiviral Protein Complex With Formycin
5'-Monophosphate
Length = 262
Score = 26.2 bits (56), Expect = 3.7
Identities = 15/48 (31%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Query: 165 VKAKKQ-SVDFYALYPNLGEIGGVIYLKEKEKQLFLKTTLQRTKEVLK 211
VK++ Q + L N+G+I GV+ EK + FL +Q E +
Sbjct: 132 VKSRSQVQLGIQILDSNIGKISGVMSFTEKTEAEFLLVAIQMVSEAAR 179
>pdb|1GUP|A Chain A, Structure Of Nucleotidyltransferase Complexed With
Udp-Galactose
pdb|1GUQ|A Chain A, Structure Of Nucleotidyltransferase Complexed With
Udp-Glucose
pdb|1GUP|B Chain B, Structure Of Nucleotidyltransferase Complexed With
Udp-Galactose
pdb|1GUP|C Chain C, Structure Of Nucleotidyltransferase Complexed With
Udp-Galactose
pdb|1GUP|D Chain D, Structure Of Nucleotidyltransferase Complexed With
Udp-Galactose
pdb|1GUQ|B Chain B, Structure Of Nucleotidyltransferase Complexed With
Udp-Glucose
pdb|1GUQ|C Chain C, Structure Of Nucleotidyltransferase Complexed With
Udp-Glucose
pdb|1GUQ|D Chain D, Structure Of Nucleotidyltransferase Complexed With
Udp-Glucose
Length = 348
Score = 25.8 bits (55), Expect = 4.8
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 48 NRIIPTKSEQELKINQPYFATMQRNQLGDIVLKNL 82
N +P ++E+E ++ + YFA + L D V + L
Sbjct: 172 NSFLPNEAEREDRLQKEYFAEQKSPMLVDYVQREL 206
>pdb|1HXP|A Chain A, Nucleotide Transferase
pdb|1HXP|B Chain B, Nucleotide Transferase
Length = 348
Score = 25.8 bits (55), Expect = 4.8
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 48 NRIIPTKSEQELKINQPYFATMQRNQLGDIVLKNL 82
N +P ++E+E ++ + YFA + L D V + L
Sbjct: 172 NSFLPNEAEREDRLQKEYFAEQKSPMLVDYVQREL 206
>pdb|1SVC|P Chain P, Nfkb P50 Homodimer Bound To Dna
Length = 365
Score = 25.8 bits (55), Expect = 4.8
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 158 RKKTFLQVKAKKQSVDFYALYPNL----------GEIGGVIYLKEKEKQLFLKTTLQRTK 207
+KK F ++A+ P L E GG L ++EK+L + LQ+TK
Sbjct: 146 KKKVFETLEARMTEACIRGYNPGLLVHPDLAYLQAEGGGDRQLGDREKELIRQAALQQTK 205
Query: 208 EV 209
E+
Sbjct: 206 EM 207
>pdb|1HXQ|A Chain A, The Structure Of Nucleotidylated Galactose-1-Phosphate
Uridylyltransferase From Escherichia Coli At 1.86
Angstroms Resolution
Length = 348
Score = 25.8 bits (55), Expect = 4.8
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 48 NRIIPTKSEQELKINQPYFATMQRNQLGDIVLKNL 82
N +P ++E+E ++ + YFA + L D V + L
Sbjct: 172 NSFLPNEAEREDRLQKEYFAEQKSPMLVDYVQREL 206
>pdb|1HXQ|B Chain B, The Structure Of Nucleotidylated Galactose-1-Phosphate
Uridylyltransferase From Escherichia Coli At 1.86
Angstroms Resolution
Length = 348
Score = 25.8 bits (55), Expect = 4.8
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 48 NRIIPTKSEQELKINQPYFATMQRNQLGDIVLKNL 82
N +P ++E+E ++ + YFA + L D V + L
Sbjct: 172 NSFLPNEAEREDRLQKEYFAEQKSPMLVDYVQREL 206
>pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
The Inhibitor Alpha Amanitin
Length = 1733
Score = 25.4 bits (54), Expect = 6.3
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 13 ALHSKNATHHFNAALPILLKV----LEKQDKDLFLLQVGNRIIPTKSEQELKINQPYFAT 68
+L + A F+ P LL++ DKDL + QVG RI T F
Sbjct: 1175 SLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQT-------FKNDLFVI 1227
Query: 69 MQRNQLGDIVLKNLVPAPKILDA 91
+ ++++ V PK LDA
Sbjct: 1228 WSEDNDEKLIIRCRVVRPKSLDA 1250
>pdb|1DBH|A Chain A, Dbl And Pleckstrin Homology Domains From Hsos1
Length = 354
Score = 25.4 bits (54), Expect = 6.3
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 1/63 (1%)
Query: 169 KQSVDFYALYPNLGEIGGVIYLKEKEKQLFLKTTLQRTKEVLKEAQNTLLGF-SSVEIVC 227
K++V + L + ++ E KQL K+ Q KE LK+A LL S E +C
Sbjct: 135 KEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGXEKIC 194
Query: 228 EKT 230
K+
Sbjct: 195 SKS 197
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.135 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,178,505
Number of Sequences: 13198
Number of extensions: 42931
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 10
length of query: 245
length of database: 2,899,336
effective HSP length: 86
effective length of query: 159
effective length of database: 1,764,308
effective search space: 280524972
effective search space used: 280524972
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)