BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645462|ref|NP_207636.1| thiamin phosphate
pyrophosphorylase/hyroxyethylthiazole kinase (thiB) [Helicobacter
pylori 26695]
(219 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G4T|B Chain B, Thiamin Phosphate Synthase >gi|4699825|... 142 4e-35
pdb|1G4S|A Chain A, Thiamin Phosphate Synthase >gi|15988165... 140 9e-35
pdb|1G69|B Chain B, Thiamin Phosphate Synthase >gi|15988170... 140 9e-35
pdb|1G67|A Chain A, Thiamin Phosphate Synthase >gi|15988169... 140 9e-35
pdb|1G6C|B Chain B, Thiamin Phosphate Synthase >gi|15988172... 140 9e-35
pdb|1EG1|A Chain A, Endoglucanase I From Trichoderma Reesei... 30 0.17
pdb|5REQ|A Chain A, Methylmalonyl-Coa Mutase, Y89f Mutant, ... 27 2.4
pdb|1E1C|A Chain A, Methylmalonyl-Coa Mutase H244a Mutant >... 27 2.4
pdb|6REQ|A Chain A, Methylmalonyl-Coa Mutase, 3-Carboxyprop... 27 2.4
pdb|2GBP| D-GalactoseD-Glucose Binding Protein (GGBP) >gi... 25 9.1
pdb|1F76|A Chain A, Escherichia Coli Dihydroorotate Dehydro... 25 9.1
>pdb|1G4T|B Chain B, Thiamin Phosphate Synthase
pdb|2TPS|B Chain B, Thiamin Phosphate Synthase
pdb|2TPS|A Chain A, Thiamin Phosphate Synthase
pdb|1G4T|A Chain A, Thiamin Phosphate Synthase
Length = 227
Score = 142 bits (357), Expect = 4e-35
Identities = 83/199 (41%), Positives = 124/199 (61%), Gaps = 7/199 (3%)
Query: 19 YHIKGGKNDRINALLDTLELALQSKITAFQFRQKGDLALQDPTQIKQLAMKCQKLCQKYG 78
Y I G N + + + ++ AL+ T +QFR+KG AL +IK A K Q C++ G
Sbjct: 21 YFIMGSNNTKADPVT-VVQKALKGGATLYQFREKGGDALTGEARIK-FAEKAQAACREAG 78
Query: 79 APFIVNDEVQLALELKADGVHVGQEDMAIEEVITLCKKRQFIGLSVNTLEQALKARHLDA 138
PFIVND+V+LAL LKADG+H+GQED +EV +G+S +T+ + +A D
Sbjct: 79 VPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIGD-MILGVSAHTMSEVKQAEE-DG 136
Query: 139 VAYLGVGPIFPTPSKKDKQVV-GVELLKKIKDSGIKKPLIAIGGITMHNAPKLREYG--G 195
Y+G+GPI+PT +KKD + V GV L++ ++ GI P++ IGGIT+ NA + + G G
Sbjct: 137 ADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADG 196
Query: 196 IAVISAIAQAKDKALAVGK 214
+++ISAI+QA+D A K
Sbjct: 197 VSMISAISQAEDPESAARK 215
>pdb|1G4S|A Chain A, Thiamin Phosphate Synthase
pdb|1G4S|B Chain B, Thiamin Phosphate Synthase
pdb|1G4P|A Chain A, Thiamin Phosphate Synthase
pdb|1G4P|B Chain B, Thiamin Phosphate Synthase
Length = 226
Score = 140 bits (354), Expect = 9e-35
Identities = 82/199 (41%), Positives = 124/199 (62%), Gaps = 7/199 (3%)
Query: 19 YHIKGGKNDRINALLDTLELALQSKITAFQFRQKGDLALQDPTQIKQLAMKCQKLCQKYG 78
Y I G N + + + ++ AL+ T +QFR+KG AL +IK A K Q C++ G
Sbjct: 20 YFIMGSNNTKADPVT-VVQKALKGGATLYQFREKGGDALTGEARIK-FAEKAQAACREAG 77
Query: 79 APFIVNDEVQLALELKADGVHVGQEDMAIEEVITLCKKRQFIGLSVNTLEQALKARHLDA 138
PFIVND+V+LAL LKADG+H+GQED +EV +G++ +T+ + +A D
Sbjct: 78 VPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIGD-MILGVAAHTMSEVKQAEE-DG 135
Query: 139 VAYLGVGPIFPTPSKKDKQVV-GVELLKKIKDSGIKKPLIAIGGITMHNAPKLREYG--G 195
Y+G+GPI+PT +KKD + V GV L++ ++ GI P++ IGGIT+ NA + + G G
Sbjct: 136 ADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADG 195
Query: 196 IAVISAIAQAKDKALAVGK 214
+++ISAI+QA+D A K
Sbjct: 196 VSMISAISQAEDPESAARK 214
>pdb|1G69|B Chain B, Thiamin Phosphate Synthase
pdb|1G69|A Chain A, Thiamin Phosphate Synthase
Length = 228
Score = 140 bits (354), Expect = 9e-35
Identities = 82/199 (41%), Positives = 124/199 (62%), Gaps = 7/199 (3%)
Query: 19 YHIKGGKNDRINALLDTLELALQSKITAFQFRQKGDLALQDPTQIKQLAMKCQKLCQKYG 78
Y I G N + + + ++ AL+ T +QFR+KG AL +IK A K Q C++ G
Sbjct: 22 YFIMGSNNTKADPVT-VVQKALKGGATLYQFREKGGDALTGEARIK-FAEKAQAACREAG 79
Query: 79 APFIVNDEVQLALELKADGVHVGQEDMAIEEVITLCKKRQFIGLSVNTLEQALKARHLDA 138
PFIVND+V+LAL LKADG+H+GQED +EV +G++ +T+ + +A D
Sbjct: 80 VPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIGD-MILGVAAHTMSEVKQAEE-DG 137
Query: 139 VAYLGVGPIFPTPSKKDKQVV-GVELLKKIKDSGIKKPLIAIGGITMHNAPKLREYG--G 195
Y+G+GPI+PT +KKD + V GV L++ ++ GI P++ IGGIT+ NA + + G G
Sbjct: 138 ADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADG 197
Query: 196 IAVISAIAQAKDKALAVGK 214
+++ISAI+QA+D A K
Sbjct: 198 VSMISAISQAEDPESAARK 216
>pdb|1G67|A Chain A, Thiamin Phosphate Synthase
pdb|1G67|B Chain B, Thiamin Phosphate Synthase
Length = 225
Score = 140 bits (354), Expect = 9e-35
Identities = 82/199 (41%), Positives = 124/199 (62%), Gaps = 7/199 (3%)
Query: 19 YHIKGGKNDRINALLDTLELALQSKITAFQFRQKGDLALQDPTQIKQLAMKCQKLCQKYG 78
Y I G N + + + ++ AL+ T +QFR+KG AL +IK A K Q C++ G
Sbjct: 19 YFIMGSNNTKADPVT-VVQKALKGGATLYQFREKGGDALTGEARIK-FAEKAQAACREAG 76
Query: 79 APFIVNDEVQLALELKADGVHVGQEDMAIEEVITLCKKRQFIGLSVNTLEQALKARHLDA 138
PFIVND+V+LAL LKADG+H+GQED +EV +G++ +T+ + +A D
Sbjct: 77 VPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIGD-MILGVAAHTMSEVKQAEE-DG 134
Query: 139 VAYLGVGPIFPTPSKKDKQVV-GVELLKKIKDSGIKKPLIAIGGITMHNAPKLREYG--G 195
Y+G+GPI+PT +KKD + V GV L++ ++ GI P++ IGGIT+ NA + + G G
Sbjct: 135 ADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADG 194
Query: 196 IAVISAIAQAKDKALAVGK 214
+++ISAI+QA+D A K
Sbjct: 195 VSMISAISQAEDPESAARK 213
>pdb|1G6C|B Chain B, Thiamin Phosphate Synthase
pdb|1G6C|A Chain A, Thiamin Phosphate Synthase
pdb|1G4E|B Chain B, Thiamin Phosphate Synthase
pdb|1G4E|A Chain A, Thiamin Phosphate Synthase
Length = 227
Score = 140 bits (354), Expect = 9e-35
Identities = 82/199 (41%), Positives = 124/199 (62%), Gaps = 7/199 (3%)
Query: 19 YHIKGGKNDRINALLDTLELALQSKITAFQFRQKGDLALQDPTQIKQLAMKCQKLCQKYG 78
Y I G N + + + ++ AL+ T +QFR+KG AL +IK A K Q C++ G
Sbjct: 21 YFIMGSNNTKADPVT-VVQKALKGGATLYQFREKGGDALTGEARIK-FAEKAQAACREAG 78
Query: 79 APFIVNDEVQLALELKADGVHVGQEDMAIEEVITLCKKRQFIGLSVNTLEQALKARHLDA 138
PFIVND+V+LAL LKADG+H+GQED +EV +G++ +T+ + +A D
Sbjct: 79 VPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIGD-MILGVAAHTMSEVKQAEE-DG 136
Query: 139 VAYLGVGPIFPTPSKKDKQVV-GVELLKKIKDSGIKKPLIAIGGITMHNAPKLREYG--G 195
Y+G+GPI+PT +KKD + V GV L++ ++ GI P++ IGGIT+ NA + + G G
Sbjct: 137 ADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADG 196
Query: 196 IAVISAIAQAKDKALAVGK 214
+++ISAI+QA+D A K
Sbjct: 197 VSMISAISQAEDPESAARK 215
>pdb|1EG1|A Chain A, Endoglucanase I From Trichoderma Reesei
pdb|1EG1|C Chain C, Endoglucanase I From Trichoderma Reesei
Length = 371
Score = 30.4 bits (67), Expect = 0.17
Identities = 17/56 (30%), Positives = 28/56 (49%), Gaps = 7/56 (12%)
Query: 161 VELLKKIKDSGIKKPLIAIGGITMHNAPKLREYGGIAVISAIAQAKDKALAVGKLL 216
V + +K + +G+ P GG T+ + P YGG+A + KAL+ G +L
Sbjct: 267 VSITRKYQQNGVDIPSAQPGGDTISSCPSASAYGGLATMG-------KALSSGMVL 315
>pdb|5REQ|A Chain A, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|5REQ|C Chain C, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
Length = 727
Score = 26.6 bits (57), Expect = 2.4
Identities = 26/109 (23%), Positives = 47/109 (42%), Gaps = 20/109 (18%)
Query: 128 EQALKARHLDAVAYLGVGPIFPTPSKKDKQ-------VVGVE------------LLKKIK 168
++ + + D + VGP+F TP + +Q VVGV L K++
Sbjct: 613 QKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELD 672
Query: 169 DSGIKKPLIAIGG-ITMHNAPKLREYGGIAVISAIAQAKDKALAVGKLL 216
G LI +GG I + +LR+ G + + + + A+++ K L
Sbjct: 673 KLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKL 721
>pdb|1E1C|A Chain A, Methylmalonyl-Coa Mutase H244a Mutant
pdb|1E1C|C Chain C, Methylmalonyl-Coa Mutase H244a Mutant
Length = 727
Score = 26.6 bits (57), Expect = 2.4
Identities = 26/109 (23%), Positives = 47/109 (42%), Gaps = 20/109 (18%)
Query: 128 EQALKARHLDAVAYLGVGPIFPTPSKKDKQ-------VVGVE------------LLKKIK 168
++ + + D + VGP+F TP + +Q VVGV L K++
Sbjct: 613 QKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELD 672
Query: 169 DSGIKKPLIAIGG-ITMHNAPKLREYGGIAVISAIAQAKDKALAVGKLL 216
G LI +GG I + +LR+ G + + + + A+++ K L
Sbjct: 673 KLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKL 721
>pdb|6REQ|A Chain A, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|6REQ|C Chain C, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|4REQ|A Chain A, Methylmalonyl-Coa Mutase Substrate Complex
pdb|4REQ|C Chain C, Methylmalonyl-Coa Mutase Substrate Complex
pdb|1REQ|A Chain A, Methylmalonyl-Coa Mutase
pdb|1REQ|C Chain C, Methylmalonyl-Coa Mutase
pdb|2REQ|A Chain A, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|2REQ|C Chain C, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|3REQ|A Chain A, Methylmalonyl-Coa Mutase, Substrate-Free State (Poor
Quality Structure)
pdb|7REQ|A Chain A, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|C Chain C, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
Length = 727
Score = 26.6 bits (57), Expect = 2.4
Identities = 26/109 (23%), Positives = 47/109 (42%), Gaps = 20/109 (18%)
Query: 128 EQALKARHLDAVAYLGVGPIFPTPSKKDKQ-------VVGVE------------LLKKIK 168
++ + + D + VGP+F TP + +Q VVGV L K++
Sbjct: 613 QKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELD 672
Query: 169 DSGIKKPLIAIGG-ITMHNAPKLREYGGIAVISAIAQAKDKALAVGKLL 216
G LI +GG I + +LR+ G + + + + A+++ K L
Sbjct: 673 KLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKL 721
>pdb|2GBP| D-GalactoseD-Glucose Binding Protein (GGBP)
pdb|1GLG| GalactoseGLUCOSE-Binding Protein Complexed With D-Galactose
Length = 309
Score = 24.6 bits (52), Expect = 9.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 178 AIGGITMHNAPKLREYGGIAVISAIAQAKDKALAVGKLLNNA 219
A+ + HN + +G A+ A+A K ALA G +LN+A
Sbjct: 218 AVEALKAHNKSSIPVFGVDALPEALALVKSGALA-GTVLNDA 258
>pdb|1F76|A Chain A, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|B Chain B, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|D Chain D, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|E Chain E, Escherichia Coli Dihydroorotate Dehydrogenase
Length = 336
Score = 24.6 bits (52), Expect = 9.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 113 LCKKRQFIGLSVNTLEQALKARHLDAVAYLGVGPIFPTPSKKDK 156
L + F L V+ L + +K H D V + +G TP ++ K
Sbjct: 109 LINRXGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGK 152
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,171,488
Number of Sequences: 13198
Number of extensions: 43548
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 11
length of query: 219
length of database: 2,899,336
effective HSP length: 85
effective length of query: 134
effective length of database: 1,777,506
effective search space: 238185804
effective search space used: 238185804
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)