BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645464|ref|NP_207638.1| thiamin phosphate
pyrophosphorylase/hyroxyethylthiazole kinase (thiM) [Helicobacter
pylori 26695]
(273 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1C3Q|A Chain A, Crystal Structure Of Native Thiazole Ki... 153 2e-38
pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mu... 149 3e-37
pdb|1EKK|A Chain A, Crystal Structure Of Hydroxyethylthiazo... 149 4e-37
pdb|1QBE|B Chain B, Bacteriophage Q Beta Capsid >gi|1633136... 27 3.3
pdb|1GDH|A Chain A, D-Glycerate Dehydrogenase (Apo Form) (E... 26 5.6
pdb|1BQB|A Chain A, Aureolysin, Staphylococcus Aureus Metal... 25 7.3
pdb|1H78|A Chain A, Structural Basis For Allosteric Substra... 25 9.5
>pdb|1C3Q|A Chain A, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|B Chain B, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|C Chain C, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
Length = 272
Score = 153 bits (386), Expect = 2e-38
Identities = 91/260 (35%), Positives = 151/260 (58%), Gaps = 8/260 (3%)
Query: 16 LKELRQKRPLVHNITNYVAAQFVANGLLALGASPLMSDAIDEMRDLAKISDALAINIGTL 75
L +R+ PLVH+ITN V F ANGLLALGASP+M+ A +E+ D+AKI+ AL +NIGTL
Sbjct: 10 LTAVRRHSPLVHSITNNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTL 69
Query: 76 NDRAILCAKEAIKHYKALNKPIVLDPVGCSASALRHDTSLELLKSGGISALRGNAAELGS 135
+ ++ A K P++LDPVG A+ R +++ ++++ ++A+RGNAAE+
Sbjct: 70 SKESVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAH 129
Query: 136 LVGIS-CESKGLDSNDAATP-VEIIKLAAQKYSVIAVMTGKTDYVSDGKKVLSITGGSEY 193
VG++ KG+D+ + + + + AAQK + + +TG+ D ++D V ++ G +
Sbjct: 130 TVGVTDWLIKGVDAGEGGGDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKL 189
Query: 194 LALITGAGCLHAAACASFLSLKKDPLDSMAQLCALYKQAAFNAQKKVLENNGSNGSFLFY 253
L +TGAGCL + +F +++++PL + + Y AA A ++ + GSF
Sbjct: 190 LTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQLAAQQTADK--GPGSFQIE 247
Query: 254 FLDALSLPIELENSLIKEEW 273
L+ LS E + +EW
Sbjct: 248 LLNKLSTVTEQD----VQEW 263
>pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESQ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate
Length = 284
Score = 149 bits (376), Expect = 3e-37
Identities = 90/260 (34%), Positives = 150/260 (57%), Gaps = 8/260 (3%)
Query: 16 LKELRQKRPLVHNITNYVAAQFVANGLLALGASPLMSDAIDEMRDLAKISDALAINIGTL 75
L +R+ PLVH+ITN V F ANGLLALGASP+M+ A +E+ D+AKI+ AL +NIGTL
Sbjct: 22 LTAVRRHSPLVHSITNNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTL 81
Query: 76 NDRAILCAKEAIKHYKALNKPIVLDPVGCSASALRHDTSLELLKSGGISALRGNAAELGS 135
+ ++ A K P++LDPVG A+ R +++ ++++ ++A+RGNAAE+
Sbjct: 82 SKESVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAH 141
Query: 136 LVGIS-CESKGLDSNDAATP-VEIIKLAAQKYSVIAVMTGKTDYVSDGKKVLSITGGSEY 193
VG++ KG+D+ + + + + AAQK + + +TG+ D ++D V ++ G +
Sbjct: 142 TVGVTDWLIKGVDAGEGGGDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKL 201
Query: 194 LALITGAGCLHAAACASFLSLKKDPLDSMAQLCALYKQAAFNAQKKVLENNGSNGSFLFY 253
L +TGAG L + +F +++++PL + + Y AA A ++ + GSF
Sbjct: 202 LTKVTGAGSLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQLAAQQTADK--GPGSFQIE 259
Query: 254 FLDALSLPIELENSLIKEEW 273
L+ LS E + +EW
Sbjct: 260 LLNKLSTVTEQD----VQEW 275
>pdb|1EKK|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKK|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKQ|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
pdb|1EKQ|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
Length = 272
Score = 149 bits (375), Expect = 4e-37
Identities = 90/260 (34%), Positives = 150/260 (57%), Gaps = 8/260 (3%)
Query: 16 LKELRQKRPLVHNITNYVAAQFVANGLLALGASPLMSDAIDEMRDLAKISDALAINIGTL 75
L +R+ PLVH+ITN V F ANGLLALGASP+M+ A +E+ D+AKI+ AL +NIGTL
Sbjct: 10 LTAVRRHSPLVHSITNNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTL 69
Query: 76 NDRAILCAKEAIKHYKALNKPIVLDPVGCSASALRHDTSLELLKSGGISALRGNAAELGS 135
+ ++ A K P++LDPVG A+ R +++ ++++ ++A+RGNAAE+
Sbjct: 70 SKESVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAH 129
Query: 136 LVGIS-CESKGLDSNDAATP-VEIIKLAAQKYSVIAVMTGKTDYVSDGKKVLSITGGSEY 193
VG++ KG+D+ + + + + AAQK + + +TG+ D ++D V ++ G +
Sbjct: 130 TVGVTDWLIKGVDAGEGGGDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKL 189
Query: 194 LALITGAGCLHAAACASFLSLKKDPLDSMAQLCALYKQAAFNAQKKVLENNGSNGSFLFY 253
L +TGAG L + +F +++++PL + + Y AA A ++ + GSF
Sbjct: 190 LTKVTGAGXLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQLAAQQTADK--GPGSFQIE 247
Query: 254 FLDALSLPIELENSLIKEEW 273
L+ LS E + +EW
Sbjct: 248 LLNKLSTVTEQD----VQEW 263
>pdb|1QBE|B Chain B, Bacteriophage Q Beta Capsid
pdb|1QBE|A Chain A, Bacteriophage Q Beta Capsid
pdb|1QBE|C Chain C, Bacteriophage Q Beta Capsid
Length = 132
Score = 26.6 bits (57), Expect = 3.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 37 FVANGLLALGASPLMSDAIDEM 58
FV L AL ASPL+ DAID++
Sbjct: 107 FVRTELAALLASPLLIDAIDQL 128
>pdb|1GDH|A Chain A, D-Glycerate Dehydrogenase (Apo Form) (E.C.1.1.1.29)
pdb|1GDH|B Chain B, D-Glycerate Dehydrogenase (Apo Form) (E.C.1.1.1.29)
Length = 320
Score = 25.8 bits (55), Expect = 5.6
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 42 LLALGASPLMSDAIDEMRDLAKISDALAINIGTLNDRAILCAKEAI 87
++A G P ++ IDEM + AK DAL I TLN++ C KE I
Sbjct: 24 VIAHGDDPKIT--IDEMIETAKSVDALLI---TLNEK---CRKEVI 61
>pdb|1BQB|A Chain A, Aureolysin, Staphylococcus Aureus Metalloproteinase
Length = 301
Score = 25.4 bits (54), Expect = 7.3
Identities = 19/78 (24%), Positives = 32/78 (40%), Gaps = 1/78 (1%)
Query: 116 ELLKSGGISALRGNAAELGSLVGISCESKGLDSNDAATPVEIIKLAAQKYSVIAVMTGKT 175
+L G +SA N + G I+ E + +D V+ A Q Y G+
Sbjct: 30 DLTHQGKLSAYNFND-QTGQATLITNEDENFVKDDQRAGVDANYYAKQTYDYYKNTFGRE 88
Query: 176 DYVSDGKKVLSITGGSEY 193
Y + G ++S+T + Y
Sbjct: 89 SYDNHGSPIVSLTHVNHY 106
>pdb|1H78|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dctp.
pdb|1H7A|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Datp
pdb|1H77|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dgtp
pdb|1H79|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dttp
pdb|1H7B|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases,
Native Nrdd
Length = 605
Score = 25.0 bits (53), Expect = 9.5
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 79 AILCAKEAIKHYKALNKPIVLDPVGCSASALRHDTSLELLKSGGISALRG--NAAELGSL 136
A++C ++K KA PI+ D +EL K+G S G EL L
Sbjct: 351 ALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELFKNGRSSVSLGYIGIHELNIL 410
Query: 137 VG 138
VG
Sbjct: 411 VG 412
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,444,208
Number of Sequences: 13198
Number of extensions: 53749
Number of successful extensions: 234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 7
length of query: 273
length of database: 2,899,336
effective HSP length: 87
effective length of query: 186
effective length of database: 1,751,110
effective search space: 325706460
effective search space used: 325706460
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)