BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645468|ref|NP_207642.1| hypothetical protein
[Helicobacter pylori 26695]
(96 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With ... 28 0.16
pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With ... 27 0.47
pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With ... 26 0.62
pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With ... 26 0.62
pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-... 26 0.62
pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase... 26 0.62
pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed Wi... 26 0.62
pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E... 26 0.62
pdb|1QUE| X-Ray Structure Of The Ferredoxin:nadp+ Reducta... 26 0.62
pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With ... 26 0.62
pdb|1GO2|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase... 26 0.62
pdb|1QUF| X-Ray Structure Of A Complex Nadp+-Ferredoxin:n... 26 0.62
pdb|1BJK| Ferredoxin:nadp+ Reductase Mutant With Arg 264 ... 26 0.62
pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With ... 26 0.80
pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With ... 26 0.80
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular ... 25 1.0
pdb|1JEZ|A Chain A, The Structure Of Xylose Reductase, A Di... 23 5.2
pdb|1QI1|A Chain A, Ternary Complex Of An Nadp Dependent Al... 23 6.8
pdb|1EUH|A Chain A, Apo Form Of A Nadp Dependent Aldehyde D... 23 6.8
pdb|1JS8|A Chain A, Structure Of A Functional Unit From Oct... 22 8.9
>pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced
By Asp (L78d)
Length = 295
Score = 28.1 bits (61), Expect = 0.16
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 54 ELEEYTIKFTHQTDRIDDNALSLCLKR 80
+L +Y+I T D +DD +SLC+++
Sbjct: 67 KLRDYSIASTRHGDDVDDKTISLCVRQ 93
>pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Gln (K75q)
Length = 304
Score = 26.6 bits (57), Expect = 0.47
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 54 ELEEYTIKFTHQTDRIDDNALSLCLKR 80
+L Y+I T D +DD +SLC+++
Sbjct: 76 QLRLYSIASTRHGDDVDDKTISLCVRQ 102
>pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By
Asp And Leu 78 Mutated By Asp
Length = 295
Score = 26.2 bits (56), Expect = 0.62
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 57 EYTIKFTHQTDRIDDNALSLCLKR 80
+Y+I T D +DD +SLC+++
Sbjct: 70 DYSIASTRHGDDVDDKTISLCVRQ 93
>pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced
By Leu (V136l)
Length = 295
Score = 26.2 bits (56), Expect = 0.62
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 54 ELEEYTIKFTHQTDRIDDNALSLCLKR 80
+L Y+I T D +DD +SLC+++
Sbjct: 67 KLRLYSIASTRHGDDVDDKTISLCVRQ 93
>pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
pdb|1EWY|B Chain B, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 303
Score = 26.2 bits (56), Expect = 0.62
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 54 ELEEYTIKFTHQTDRIDDNALSLCLKR 80
+L Y+I T D +DD +SLC+++
Sbjct: 75 KLRLYSIASTRHGDDVDDKTISLCVRQ 101
>pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139
Replaced By Lys (E139k)
Length = 303
Score = 26.2 bits (56), Expect = 0.62
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 54 ELEEYTIKFTHQTDRIDDNALSLCLKR 80
+L Y+I T D +DD +SLC+++
Sbjct: 75 KLRLYSIASTRHGDDVDDKTISLCVRQ 101
>pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By
Cocrystallization
Length = 304
Score = 26.2 bits (56), Expect = 0.62
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 54 ELEEYTIKFTHQTDRIDDNALSLCLKR 80
+L Y+I T D +DD +SLC+++
Sbjct: 76 KLRLYSIASTRHGDDVDDKTISLCVRQ 102
>pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A)
Length = 304
Score = 26.2 bits (56), Expect = 0.62
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 54 ELEEYTIKFTHQTDRIDDNALSLCLKR 80
+L Y+I T D +DD +SLC+++
Sbjct: 76 KLRLYSIASTRHGDDVDDKTISLCVRQ 102
>pdb|1QUE| X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The
Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms
Length = 303
Score = 26.2 bits (56), Expect = 0.62
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 54 ELEEYTIKFTHQTDRIDDNALSLCLKR 80
+L Y+I T D +DD +SLC+++
Sbjct: 75 KLRLYSIASTRHGDDVDDKTISLCVRQ 101
>pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced
By Gly (T155g)
Length = 295
Score = 26.2 bits (56), Expect = 0.62
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 54 ELEEYTIKFTHQTDRIDDNALSLCLKR 80
+L Y+I T D +DD +SLC+++
Sbjct: 67 KLRLYSIASTRHGDDVDDKTISLCVRQ 93
>pdb|1GO2|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Lys 72
Replaced By Glu (K72e)
Length = 304
Score = 26.2 bits (56), Expect = 0.62
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 54 ELEEYTIKFTHQTDRIDDNALSLCLKR 80
+L Y+I T D +DD +SLC+++
Sbjct: 76 KLRLYSIASTRHGDDVDDKTISLCVRQ 102
>pdb|1QUF| X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+ Reductase From
The Cyanobacterium Anabaena Pcc 7119 At 2.25 Angstroms
Length = 303
Score = 26.2 bits (56), Expect = 0.62
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 54 ELEEYTIKFTHQTDRIDDNALSLCLKR 80
+L Y+I T D +DD +SLC+++
Sbjct: 75 KLRLYSIASTRHGDDVDDKTISLCVRQ 101
>pdb|1BJK| Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By Glu
(R264e)
Length = 295
Score = 26.2 bits (56), Expect = 0.62
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 54 ELEEYTIKFTHQTDRIDDNALSLCLKR 80
+L Y+I T D +DD +SLC+++
Sbjct: 67 KLRLYSIASTRHGDDVDDKTISLCVRQ 93
>pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Ser (K75s)
Length = 304
Score = 25.8 bits (55), Expect = 0.80
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 55 LEEYTIKFTHQTDRIDDNALSLCLKR 80
L Y+I T D +DD +SLC+++
Sbjct: 77 LRLYSIASTRHGDDVDDKTISLCVRQ 102
>pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Arg (K75r)
Length = 304
Score = 25.8 bits (55), Expect = 0.80
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 55 LEEYTIKFTHQTDRIDDNALSLCLKR 80
L Y+I T D +DD +SLC+++
Sbjct: 77 LRLYSIASTRHGDDVDDKTISLCVRQ 102
>pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
Length = 692
Score = 25.4 bits (54), Expect = 1.0
Identities = 20/75 (26%), Positives = 36/75 (47%), Gaps = 14/75 (18%)
Query: 7 LLQTLAPKGVEF-----RKLGDIILSLK--------TGLNPRKF-FKLNTPNANNYYVTV 52
L AP+ +EF R L D LS K T ++P++ +L ++ N+ + V
Sbjct: 45 LKDNCAPESIEFPVSEARVLEDRPLSDKGSGDSSQVTQVSPQRIALRLRPDDSKNFSIQV 104
Query: 53 RELEEYTIKFTHQTD 67
R++E+Y + + D
Sbjct: 105 RQVEDYPVDIYYLMD 119
>pdb|1JEZ|A Chain A, The Structure Of Xylose Reductase, A Dimeric Aldo-Keto
Reductase From Candida Tenuis
pdb|1JEZ|B Chain B, The Structure Of Xylose Reductase, A Dimeric Aldo-Keto
Reductase From Candida Tenuis
pdb|1K8C|A Chain A, Crystal Structure Of Dimeric Xylose Reductase In Complex
With Nadp(H)
pdb|1K8C|B Chain B, Crystal Structure Of Dimeric Xylose Reductase In Complex
With Nadp(H)
pdb|1K8C|C Chain C, Crystal Structure Of Dimeric Xylose Reductase In Complex
With Nadp(H)
pdb|1K8C|D Chain D, Crystal Structure Of Dimeric Xylose Reductase In Complex
With Nadp(H)
Length = 322
Score = 23.1 bits (48), Expect = 5.2
Identities = 9/35 (25%), Positives = 18/35 (50%)
Query: 13 PKGVEFRKLGDIILSLKTGLNPRKFFKLNTPNANN 47
PK +EF + + ++ + P+ F ++N A N
Sbjct: 201 PKLIEFAQKAGVTITAYSSFGPQSFVEMNQGRALN 235
>pdb|1QI1|A Chain A, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|B Chain B, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|C Chain C, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|D Chain D, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
Length = 475
Score = 22.7 bits (47), Expect = 6.8
Identities = 13/40 (32%), Positives = 20/40 (49%)
Query: 54 ELEEYTIKFTHQTDRIDDNALSLCLKRSNLEKDDIFYSLE 93
+LE T+ ++T R DN L K+S + YS+E
Sbjct: 423 QLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIE 462
>pdb|1EUH|A Chain A, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|B Chain B, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|C Chain C, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|D Chain D, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1QI6|A Chain A, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|B Chain B, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|C Chain C, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|D Chain D, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|2EUH|A Chain A, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|B Chain B, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|C Chain C, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|D Chain D, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
Length = 475
Score = 22.7 bits (47), Expect = 6.8
Identities = 13/40 (32%), Positives = 20/40 (49%)
Query: 54 ELEEYTIKFTHQTDRIDDNALSLCLKRSNLEKDDIFYSLE 93
+LE T+ ++T R DN L K+S + YS+E
Sbjct: 423 QLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIE 462
>pdb|1JS8|A Chain A, Structure Of A Functional Unit From Octopus Hemocyanin
pdb|1JS8|B Chain B, Structure Of A Functional Unit From Octopus Hemocyanin
Length = 394
Score = 22.3 bits (46), Expect = 8.9
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 3 KIEQLLQTLAPKGVEFRKLGDIILSLKTGLNPRKFFKL--NTPNANNYYVTVRELEEYTI 60
+I +L++ L P ++ + + TG + KL + N N + +T+ ELEE+
Sbjct: 227 EINKLVKPLKPFNLDTNP-NAVTKAHSTGATSFDYHKLGYDYDNLNFHGMTIPELEEHLK 285
Query: 61 KFTHQTDRI 69
+ H+ DR+
Sbjct: 286 EIQHE-DRV 293
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,422
Number of Sequences: 13198
Number of extensions: 18681
Number of successful extensions: 34
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 20
length of query: 96
length of database: 2,899,336
effective HSP length: 72
effective length of query: 24
effective length of database: 1,949,080
effective search space: 46777920
effective search space used: 46777920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)