BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645470|ref|NP_207644.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
         (227 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1QI9|B  Chain B, X-Ray Siras Structure Determination Of ...    26  3.3
pdb|1M2O|A  Chain A, Crystal Structure Of The Sec23-Sar1 Com...    25  7.4

>pdb|1QI9|B Chain B, X-Ray Siras Structure Determination Of A
           Vanadium-Dependent Haloperoxidase From Ascophyllum
           Nodosum At 2.0 A Resolution
 pdb|1QI9|A Chain A, X-Ray Siras Structure Determination Of A
           Vanadium-Dependent Haloperoxidase From Ascophyllum
           Nodosum At 2.0 A Resolution
          Length = 556

 Score = 26.2 bits (56), Expect = 3.3
 Identities = 11/23 (47%), Positives = 15/23 (64%)

Query: 184 MAYDRVYLGVHYPSDVLGGFLLG 206
           +A+ R  LG+HY  D + G LLG
Sbjct: 476 VAFGRQMLGIHYRFDGIQGLLLG 498



>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
 pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
 pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
          Length = 768

 Score = 25.0 bits (53), Expect = 7.4
 Identities = 16/35 (45%), Positives = 18/35 (50%), Gaps = 4/35 (11%)

Query: 139 FSFPSGH----ALASALFYGSLALLLCYSNANNRI 169
           +S P+GH    A  SAL   SL L  CY N   RI
Sbjct: 250 WSVPAGHRPLRATGSALNIASLLLQGCYKNIPARI 284



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.333    0.147    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,267,097
Number of Sequences: 13198
Number of extensions: 46076
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 4
length of query: 227
length of database: 2,899,336
effective HSP length: 85
effective length of query: 142
effective length of database: 1,777,506
effective search space: 252405852
effective search space used: 252405852
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 52 (24.6 bits)