BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645473|ref|NP_207648.1| GMP reductase (guaC)
[Helicobacter pylori 26695]
(327 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of B... 149 3e-37
pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Im... 143 3e-35
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosin... 114 1e-26
pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosph... 111 1e-25
pdb|1AK5| Inosine Monophosphate Dehydrogenase (Impdh) Fro... 78 2e-15
pdb|1H5Y|A Chain A, Hisf Protein From Pyrobaculum Aerophilu... 36 0.007
pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant O... 35 0.015
pdb|1GOX| Glycolate Oxidase (E.C.1.1.3.1) 33 0.045
pdb|1GYL|A Chain A, Glycolate Oxidase (E.C.1.1.3.15) Mutant... 33 0.045
pdb|1AL7| Three-Dimensional Structures Of Glycolate Oxida... 33 0.045
pdb|1THF|D Chain D, Cyclase Subunit Of Imidazoleglycerolpho... 30 0.49
pdb|1GPW|C Chain C, Structural Evidence For Ammonia Tunneli... 30 0.49
pdb|1LTD|A Chain A, Flavocytochrome B2 (E.C.1.1.2.3) Comple... 29 0.84
pdb|1LCO|A Chain A, Mol_id: 1; Molecule: L-Lactate Dehydrog... 29 0.84
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombina... 29 0.84
pdb|1FWR|A Chain A, Crystal Structure Of Kdpg Aldolase Doub... 29 0.84
pdb|1EUA|A Chain A, Schiff Base Intermediate In Kdpg Aldola... 29 0.84
pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombina... 29 0.84
pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant >g... 29 0.84
pdb|1L6W|A Chain A, Fructose-6-Phosphate Aldolase >gi|21730... 28 1.4
pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lac... 27 2.5
pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Comp... 27 2.5
pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee... 27 3.2
pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair 27 3.2
pdb|1LN0|A Chain A, Structure Of The Catalytic Domain Of Ho... 27 4.2
pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthe... 26 5.5
pdb|1B76|A Chain A, Glycyl-Trna Synthetase From Thermus The... 26 5.5
pdb|1MK0|A Chain A, Catalytic Domain Of Intron Endonuclease... 26 7.1
>pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'-Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'-Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 149 bits (377), Expect = 3e-37
Identities = 99/236 (41%), Positives = 132/236 (54%), Gaps = 23/236 (9%)
Query: 103 VEELAKQGLAPDYITIDIAHGHSNSVIEMIQRIKTHLPETFVIAGNVGTPEAVRELENAG 162
VEEL K + D + ID AHGHS +IE+I++IKT P +IAGN+ T EA +L + G
Sbjct: 158 VEELVKAHV--DILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVG 215
Query: 163 ADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKP---IIADGGIRTHGDIVK 219
AD KVGIGPG +C T+I G G Q+ A+ +A IIADGGIR GD+VK
Sbjct: 216 ADCLKVGIGPGSICTTRIVAGVGVP--QITAICDVYEACNNTNICIIADGGIRFSGDVVK 273
Query: 220 SIRFGATMVMIGSLFAGHEESSGETKIENGIAYKEY--FGSASEFQKGEK------KNIE 271
+I GA VMIG+LFAG +ES E I NG +K Y GS S ++G K +N E
Sbjct: 274 AIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNE 333
Query: 272 GKKI-------WIQHKGSLKDTLVEMHQDLQSSISYAGGRDLEAIRKVDYVIVKNS 320
KK+ + + G LKD L ++ L S + Y G + + K++ VK S
Sbjct: 334 PKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDL-KINSKFVKIS 388
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 143 bits (360), Expect = 3e-35
Identities = 92/256 (35%), Positives = 130/256 (49%), Gaps = 28/256 (10%)
Query: 77 PFVKKMKKRQWISSISVGVKKEECLFVEELAKQGLAPDYITIDIAHGHSNSVIEMIQRIK 136
P K + + + + +VGV + E L + G D I ID AHGHS V+ I I+
Sbjct: 212 PHAAKDEFGRLLVAAAVGVTSDTFERAEALFEAGA--DAIVIDTAHGHSAGVLRKIAEIR 269
Query: 137 THLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRW 196
H P +IAGN+ T E R L +AG D KVGIGPG +C T++ G G Q+ A+
Sbjct: 270 AHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVP--QVTAIYD 327
Query: 197 CAKAAR---KPIIADGGIRTHGDIVKSIRFGATMVMIGSLFAGHEESSGETKIENGIAYK 253
A AR K IIADGGI+ GDIVK++ G V +GS FAG +E+ GET+I G YK
Sbjct: 328 AAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVXLGSXFAGTDEAPGETEIYQGRKYK 387
Query: 254 EY------------------FGSASEFQKGEKKNIEGKKIWIQHKGSLKDTLVEMHQDLQ 295
Y GS +E K + IEG+ + +KG+ D + + ++
Sbjct: 388 TYRGXGSIAAXKKGSSDRYFQGSVNEANKLVPEGIEGR---VAYKGAASDIVFQXLGGIR 444
Query: 296 SSISYAGGRDLEAIRK 311
S Y G D++ + +
Sbjct: 445 SGXGYVGAGDIQELHE 460
Score = 25.8 bits (55), Expect = 7.1
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 4 KVFDYEDVQLIPNKCIVNSRSECDTTVILGKHAFKMPIVPANMQTIINESIAEFLAENGY 63
K + ++DV LIP + V T + +PI+ A T+ A +A G
Sbjct: 10 KGYTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAXDTVTGSKXAIAIARAGG 69
Query: 64 FYIMHR 69
++H+
Sbjct: 70 LGVIHK 75
>pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
Length = 514
Score = 114 bits (286), Expect = 1e-26
Identities = 82/255 (32%), Positives = 128/255 (50%), Gaps = 21/255 (8%)
Query: 77 PFVKKMKKRQWISSISVGVKKEECLFVEELAKQGLAPDYITIDIAHGHSNSVIEMIQRIK 136
P K K+Q + ++G +++ ++ LA+ G+ D + +D + G+S I MI+ IK
Sbjct: 234 PLASKDAKKQLLCGAAIGTHEDDKYRLDLLAQAGV--DVVVLDSSQGNSIFQINMIKYIK 291
Query: 137 THLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRW 196
P VI GNV T + L +AG DA +VG+G G +CIT + G Q A+
Sbjct: 292 DKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGSGSICIT--QEVLACGRPQATAVYK 349
Query: 197 CAKAARK---PIIADGGIRTHGDIVKSIRFGATMVMIGSLFAGHEESSGETKIENGIAYK 253
++ AR+ P+IADGGI+ G I K++ GA+ VM+GSL A E+ GE +GI K
Sbjct: 350 VSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLK 409
Query: 254 EYFGSAS-------------EFQKGEK-KNIEGKKIWIQHKGSLKDTLVEMHQDLQSSIS 299
+Y G S F + +K K +G +Q KGS+ + + +Q S
Sbjct: 410 KYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQ 469
Query: 300 YAGGRDLEAIRKVDY 314
G + L +R + Y
Sbjct: 470 DIGAKSLTQVRAMMY 484
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 111 bits (278), Expect = 1e-25
Identities = 81/255 (31%), Positives = 127/255 (49%), Gaps = 21/255 (8%)
Query: 77 PFVKKMKKRQWISSISVGVKKEECLFVEELAKQGLAPDYITIDIAHGHSNSVIEMIQRIK 136
P K K+Q + ++G +++ ++ LA G+ D + +D + G+S I MI+ +K
Sbjct: 234 PLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGV--DVVVLDSSQGNSIFQINMIKYMK 291
Query: 137 THLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRW 196
P VI GNV T + L +AG DA +VG+G G +CIT+ G Q A+
Sbjct: 292 EKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRP--QATAVYK 349
Query: 197 CAKAARK---PIIADGGIRTHGDIVKSIRFGATMVMIGSLFAGHEESSGETKIENGIAYK 253
++ AR+ P+IADGGI+ G I K++ GA+ VM+GSL A E+ GE +GI K
Sbjct: 350 VSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLK 409
Query: 254 EYFGSAS-------------EFQKGEK-KNIEGKKIWIQHKGSLKDTLVEMHQDLQSSIS 299
+Y G S F + +K K +G +Q KGS+ + + +Q S
Sbjct: 410 KYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQ 469
Query: 300 YAGGRDLEAIRKVDY 314
G + L +R + Y
Sbjct: 470 DIGAKSLTQVRAMMY 484
>pdb|1AK5| Inosine Monophosphate Dehydrogenase (Impdh) From Tritrichomonas
Foetus
Length = 503
Score = 77.8 bits (190), Expect = 2e-15
Identities = 56/195 (28%), Positives = 89/195 (44%), Gaps = 21/195 (10%)
Query: 146 AGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARK-- 203
AGN+ E R L +AGAD K+GIG G +CIT+ + G G G Q A+ K
Sbjct: 289 AGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRG--QATAVIDVVAERNKYF 346
Query: 204 -------PIIADGGIRTHGDIVKSIRFGATMVMIGSLFAGHEESSGETKIENGIAYKEYF 256
P+ +DGGI + ++ GA +M+G FA EES NG KEY+
Sbjct: 347 EETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYW 406
Query: 257 GSAS-------EFQKGEKKNI---EGKKIWIQHKGSLKDTLVEMHQDLQSSISYAGGRDL 306
G S + G K+ + EG ++ + G LKD + ++S++ G +
Sbjct: 407 GEGSSRARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTI 466
Query: 307 EAIRKVDYVIVKNSI 321
++ + + +S+
Sbjct: 467 PQLQSKAKITLVSSV 481
>pdb|1H5Y|A Chain A, Hisf Protein From Pyrobaculum Aerophilum
pdb|1H5Y|B Chain B, Hisf Protein From Pyrobaculum Aerophilum
Length = 253
Score = 35.8 bits (81), Expect = 0.007
Identities = 27/82 (32%), Positives = 39/82 (46%), Gaps = 7/82 (8%)
Query: 159 ENAGADATKVG-----IGPGKVCITKIKTGFGTG-GWQLAALRWCAKAARKPIIADGGIR 212
E G DA K +G G++ +T I GTG G+ + +R A + R P+IA GG
Sbjct: 150 EATGLDAVKWAKEVEELGAGEILLTSIDRD-GTGLGYDVELIRRVADSVRIPVIASGGAG 208
Query: 213 THGDIVKSIRFGATMVMIGSLF 234
++ GA V+ SLF
Sbjct: 209 RVEHFYEAAAAGADAVLAASLF 230
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-
Associated (S)-Mandelate Dehydrogenase From Pseudomonas
Putida At 2.15a Resolution
Length = 380
Score = 34.7 bits (78), Expect = 0.015
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 203 KPIIADGGIRTHGDIVKSIRFGATMVMIGSLFAGHEESSGETKIE 247
KP++ D G R DIVK++ GA V++G + GET ++
Sbjct: 279 KPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVD 323
>pdb|1GOX| Glycolate Oxidase (E.C.1.1.3.1)
Length = 369
Score = 33.1 bits (74), Expect = 0.045
Identities = 20/59 (33%), Positives = 29/59 (48%), Gaps = 2/59 (3%)
Query: 191 LAALRWCAKAA--RKPIIADGGIRTHGDIVKSIRFGATMVMIGSLFAGHEESSGETKIE 247
+ AL KAA R P+ DGG+R D+ K++ GA V IG + GE ++
Sbjct: 266 IMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVK 324
>pdb|1GYL|A Chain A, Glycolate Oxidase (E.C.1.1.3.15) Mutant With Tyr 24
Replaced By Phe (Y24f)
pdb|1GYL|B Chain B, Glycolate Oxidase (E.C.1.1.3.15) Mutant With Tyr 24
Replaced By Phe (Y24f)
Length = 369
Score = 33.1 bits (74), Expect = 0.045
Identities = 20/59 (33%), Positives = 29/59 (48%), Gaps = 2/59 (3%)
Query: 191 LAALRWCAKAA--RKPIIADGGIRTHGDIVKSIRFGATMVMIGSLFAGHEESSGETKIE 247
+ AL KAA R P+ DGG+R D+ K++ GA V IG + GE ++
Sbjct: 266 IMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVK 324
>pdb|1AL7| Three-Dimensional Structures Of Glycolate Oxidase With Bound
Active-Site Inhibitors
pdb|1AL8| Three-Dimensional Structure Of Glycolate Oxidase With Bound
Active-Site Inhibitors
Length = 359
Score = 33.1 bits (74), Expect = 0.045
Identities = 20/59 (33%), Positives = 29/59 (48%), Gaps = 2/59 (3%)
Query: 191 LAALRWCAKAA--RKPIIADGGIRTHGDIVKSIRFGATMVMIGSLFAGHEESSGETKIE 247
+ AL KAA R P+ DGG+R D+ K++ GA V IG + GE ++
Sbjct: 266 IMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVK 324
>pdb|1THF|D Chain D, Cyclase Subunit Of Imidazoleglycerolphosphate Synthase
From Thermotoga Maritima
Length = 253
Score = 29.6 bits (65), Expect = 0.49
Identities = 19/75 (25%), Positives = 30/75 (39%)
Query: 171 GPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIVKSIRFGATMVMI 230
G G++ +T I G+ +R+ PIIA GG +++ GA +
Sbjct: 164 GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALA 223
Query: 231 GSLFAGHEESSGETK 245
S+F E E K
Sbjct: 224 ASVFHFREIDVRELK 238
>pdb|1GPW|C Chain C, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|A Chain A, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|E Chain E, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex
Length = 253
Score = 29.6 bits (65), Expect = 0.49
Identities = 19/75 (25%), Positives = 30/75 (39%)
Query: 171 GPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIVKSIRFGATMVMI 230
G G++ +T I G+ +R+ PIIA GG +++ GA +
Sbjct: 164 GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALA 223
Query: 231 GSLFAGHEESSGETK 245
S+F E E K
Sbjct: 224 ASVFHFREIDVRELK 238
>pdb|1LTD|A Chain A, Flavocytochrome B2 (E.C.1.1.2.3) Complexed With Sulfite
pdb|1LTD|B Chain B, Flavocytochrome B2 (E.C.1.1.2.3) Complexed With Sulfite
Length = 506
Score = 28.9 bits (63), Expect = 0.84
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 205 IIADGGIRTHGDIVKSIRFGATMVMIGSLFAGHEESSGETKIENGI 250
+ DGG+R D++K++ GA V +G F G +E I
Sbjct: 401 VFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAI 446
>pdb|1LCO|A Chain A, Mol_id: 1; Molecule: L-Lactate Dehydrogenase; Chain: A, B;
Synonym: Cytochrome C Oxidoreductase, Flavocytochrome
B2; Ec: 1.1.2.3; Engineered: Yes; Mutation: Tyr 143 Phe;
Heterogen: Phenyl-Pyruvate
pdb|1LDC|A Chain A, L-Lactate Dehydrogenase: Cytochrome C Oxidoreductase
(Flavocytochrome B2) (E.C.1.1.2.3) Mutant With Tyr 143
Replaced By Phe (Y143f) Complexed With Pyruvate
pdb|1LCO|B Chain B, Mol_id: 1; Molecule: L-Lactate Dehydrogenase; Chain: A, B;
Synonym: Cytochrome C Oxidoreductase, Flavocytochrome
B2; Ec: 1.1.2.3; Engineered: Yes; Mutation: Tyr 143 Phe;
Heterogen: Phenyl-Pyruvate
pdb|1LDC|B Chain B, L-Lactate Dehydrogenase: Cytochrome C Oxidoreductase
(Flavocytochrome B2) (E.C.1.1.2.3) Mutant With Tyr 143
Replaced By Phe (Y143f) Complexed With Pyruvate
Length = 511
Score = 28.9 bits (63), Expect = 0.84
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 205 IIADGGIRTHGDIVKSIRFGATMVMIGSLFAGHEESSGETKIENGI 250
+ DGG+R D++K++ GA V +G F G +E I
Sbjct: 406 VFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAI 451
>pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1FCB|A Chain A, Flavocytochrome b2 (E.C.1.1.2.3)
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1FCB|B Chain B, Flavocytochrome b2 (E.C.1.1.2.3)
Length = 511
Score = 28.9 bits (63), Expect = 0.84
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 205 IIADGGIRTHGDIVKSIRFGATMVMIGSLFAGHEESSGETKIENGI 250
+ DGG+R D++K++ GA V +G F G +E I
Sbjct: 406 VFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAI 451
>pdb|1FWR|A Chain A, Crystal Structure Of Kdpg Aldolase Double Mutant
K133qT161K
pdb|1FWR|B Chain B, Crystal Structure Of Kdpg Aldolase Double Mutant
K133qT161K
pdb|1FWR|C Chain C, Crystal Structure Of Kdpg Aldolase Double Mutant
K133qT161K
Length = 213
Score = 28.9 bits (63), Expect = 0.84
Identities = 16/45 (35%), Positives = 24/45 (52%), Gaps = 3/45 (6%)
Query: 129 IEMIQRIKTHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPG 173
++ I+ I +PE V AG V P+ + E+ AGA + I PG
Sbjct: 54 VDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGA---QFAISPG 95
>pdb|1EUA|A Chain A, Schiff Base Intermediate In Kdpg Aldolase From Escherichia
Coli
pdb|1EUA|B Chain B, Schiff Base Intermediate In Kdpg Aldolase From Escherichia
Coli
pdb|1EUA|C Chain C, Schiff Base Intermediate In Kdpg Aldolase From Escherichia
Coli
pdb|1EUN|B Chain B, Structure Of 2-Keto-3-Deoxy-6-Phosphogluconate Aldolase
From Escherichia Coli
pdb|1EUN|C Chain C, Structure Of 2-Keto-3-Deoxy-6-Phosphogluconate Aldolase
From Escherichia Coli
pdb|1FQ0|A Chain A, Kdpg Aldolase From Escherichia Coli
pdb|1FQ0|B Chain B, Kdpg Aldolase From Escherichia Coli
pdb|1FQ0|C Chain C, Kdpg Aldolase From Escherichia Coli
pdb|1EUN|A Chain A, Structure Of 2-Keto-3-Deoxy-6-Phosphogluconate Aldolase
From Escherichia Coli
Length = 213
Score = 28.9 bits (63), Expect = 0.84
Identities = 16/45 (35%), Positives = 24/45 (52%), Gaps = 3/45 (6%)
Query: 129 IEMIQRIKTHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPG 173
++ I+ I +PE V AG V P+ + E+ AGA + I PG
Sbjct: 54 VDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGA---QFAISPG 95
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
Length = 412
Score = 28.9 bits (63), Expect = 0.84
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 205 IIADGGIRTHGDIVKSIRFGATMVMIGSLFAGHEESSGETKIENGI 250
+ DGG+R D++K++ GA V +G F G +E I
Sbjct: 307 VFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAI 352
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 28.9 bits (63), Expect = 0.84
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 205 IIADGGIRTHGDIVKSIRFGATMVMIGSLFAGHEESSGETKIENGI 250
+ DGG+R D++K++ GA V +G F G +E I
Sbjct: 305 VFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAI 350
>pdb|1L6W|A Chain A, Fructose-6-Phosphate Aldolase
pdb|1L6W|B Chain B, Fructose-6-Phosphate Aldolase
pdb|1L6W|C Chain C, Fructose-6-Phosphate Aldolase
pdb|1L6W|D Chain D, Fructose-6-Phosphate Aldolase
pdb|1L6W|E Chain E, Fructose-6-Phosphate Aldolase
pdb|1L6W|F Chain F, Fructose-6-Phosphate Aldolase
pdb|1L6W|G Chain G, Fructose-6-Phosphate Aldolase
pdb|1L6W|H Chain H, Fructose-6-Phosphate Aldolase
pdb|1L6W|I Chain I, Fructose-6-Phosphate Aldolase
pdb|1L6W|J Chain J, Fructose-6-Phosphate Aldolase
Length = 220
Score = 28.1 bits (61), Expect = 1.4
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 81 KMKKRQWISSISVGVKKEECLFVEELAKQGLAPDYITIDIAHGHSN--SVIEMIQRIKTH 138
KM K + I ++ V + LA Y+ A G S +V ++ Q +K H
Sbjct: 97 KMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMH 156
Query: 139 LPETFVIAGNVGTPEAVRELENAGADA 165
P+ V+A + TP + AG ++
Sbjct: 157 APQAKVLAASFKTPRQALDCLLAGCES 183
>pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|2DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|1DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|1DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Length = 311
Score = 27.3 bits (59), Expect = 2.5
Identities = 16/35 (45%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
Query: 205 IIADGGIRTHGDIVKSIRFGATMVMIGSLFAGHEE 239
II GGI T D + + GATM+ IG+ A H+E
Sbjct: 245 IIGTGGIETGQDAFEHLLCGATMLQIGT--ALHKE 277
>pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Antiproliferative Agent A771726
pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Brequinar Analog
Length = 367
Score = 27.3 bits (59), Expect = 2.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 202 RKPIIADGGIRTHGDIVKSIRFGATMVMI 230
R PII GG+ + D ++ IR GA++V +
Sbjct: 298 RVPIIGVGGVSSGQDALEKIRAGASLVQL 326
>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
pdb|1CDO|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
Length = 374
Score = 26.9 bits (58), Expect = 3.2
Identities = 17/46 (36%), Positives = 19/46 (40%), Gaps = 5/46 (10%)
Query: 162 GADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIA 207
GA + PG C FG G LAA+ C A K IIA
Sbjct: 182 GAAVNTAKVEPGSTCAV-----FGLGAVGLAAVMGCHSAGAKRIIA 222
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 26.9 bits (58), Expect = 3.2
Identities = 20/71 (28%), Positives = 32/71 (44%), Gaps = 5/71 (7%)
Query: 46 MQTIINESIAEFLAENGYFYIMHRF---DGAARIPFVKKMKKRQWISSISVGVKKEECLF 102
M I + A NG+ Y + D + IP K+ QW V VK+E L+
Sbjct: 77 MARINHADFATVQLRNGFPYFSYDLGSGDTSTMIP--TKINDGQWHKIKIVRVKQEGILY 134
Query: 103 VEELAKQGLAP 113
V++ + Q ++P
Sbjct: 135 VDDASSQTISP 145
>pdb|1LN0|A Chain A, Structure Of The Catalytic Domain Of Homing Endonuclease
I- Tevi
pdb|1LN0|B Chain B, Structure Of The Catalytic Domain Of Homing Endonuclease
I- Tevi
Length = 97
Score = 26.6 bits (57), Expect = 4.2
Identities = 12/31 (38%), Positives = 20/31 (63%)
Query: 241 SGETKIENGIAYKEYFGSASEFQKGEKKNIE 271
SG +I+N + K Y GSA +F+K K++ +
Sbjct: 3 SGIYQIKNTLNNKVYVGSAKDFEKAWKRHFK 33
>pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
Thermophilus
pdb|1ATI|B Chain B, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
Thermophilus
Length = 505
Score = 26.2 bits (56), Expect = 5.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 254 EYFGSASEFQKGEKKNIEGKKIWIQHKGSLKDTLVEMHQDLQSSISYA 301
EYF E + + +E + W Q G ++ LV Q +SS YA
Sbjct: 241 EYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYA 288
>pdb|1B76|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
With Atp
pdb|1GGM|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
With Glycyl-Adenylate
pdb|1B76|B Chain B, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
With Atp
pdb|1GGM|B Chain B, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
With Glycyl-Adenylate
Length = 442
Score = 26.2 bits (56), Expect = 5.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 254 EYFGSASEFQKGEKKNIEGKKIWIQHKGSLKDTLVEMHQDLQSSISYA 301
EYF E + + +E + W Q G ++ LV Q +SS YA
Sbjct: 178 EYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYA 225
>pdb|1MK0|A Chain A, Catalytic Domain Of Intron Endonuclease I-Tevi, E75a
Mutant
Length = 97
Score = 25.8 bits (55), Expect = 7.1
Identities = 12/31 (38%), Positives = 20/31 (63%)
Query: 241 SGETKIENGIAYKEYFGSASEFQKGEKKNIE 271
SG +I+N + K Y GSA +F+K K++ +
Sbjct: 3 SGIYQIKNTLNNKVYVGSAKDFEKRWKRHFK 33
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,957,784
Number of Sequences: 13198
Number of extensions: 83929
Number of successful extensions: 257
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 36
length of query: 327
length of database: 2,899,336
effective HSP length: 88
effective length of query: 239
effective length of database: 1,737,912
effective search space: 415360968
effective search space used: 415360968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)