BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645475|ref|NP_207650.1| hypothetical protein
[Helicobacter pylori 26695]
(364 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BA3| Firefly Luciferase In Complex With Bromoform >g... 28 2.1
pdb|1TYC| Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) M... 27 2.8
pdb|1TYD|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.... 27 2.8
pdb|1TYA|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.... 27 2.8
pdb|1TYB|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.... 27 2.8
pdb|4TS1|A Chain A, Des-(Ile 318-Arg 417)-Tyrosyl-Transfer ... 27 2.8
pdb|2TS1| Tyrosyl-Transfer RNA Synthetase (E.C.6.1.1.1) >... 27 2.8
pdb|3HAD|A Chain A, Biochemical Characterization And Struct... 27 3.7
pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mu... 27 3.7
pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Compl... 27 3.7
pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With S... 26 6.2
pdb|1BC8|C Chain C, Structures Of Sap-1 Bound To Dna Sequen... 26 8.2
pdb|2HDH|A Chain A, Biochemical Characterization And Struct... 26 8.2
>pdb|1BA3| Firefly Luciferase In Complex With Bromoform
pdb|1LCI| Firefly Luciferase
Length = 550
Score = 27.7 bits (60), Expect = 2.1
Identities = 24/90 (26%), Positives = 40/90 (43%), Gaps = 21/90 (23%)
Query: 252 DKHFILWTRTDSLLKYKVYNHTILTRNLNTIHNALKTLLKYPNV--------EIHDLRTM 303
D+HF + R SL+KYK Y + L +I LL++PN+ D +
Sbjct: 429 DEHFFIVDRLKSLIKYKGYQ--VAPAELESI------LLQHPNIFDAGVAGLPDDDAGEL 480
Query: 304 PLAKEIKRYKDIRHYDPIGSKEVLQAIASK 333
P A + + H + KE++ +AS+
Sbjct: 481 PAAVVV-----LEHGKTMTEKEIVDYVASQ 505
>pdb|1TYC| Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) Mutant With Thr 51
Replaced By Pro (T51p)
Length = 319
Score = 27.3 bits (59), Expect = 2.8
Identities = 11/36 (30%), Positives = 18/36 (49%)
Query: 163 YFSTNYLKIKEKTFCKLNSWFQLYDFCNSVLNRYDF 198
+FS NY+ KE ++ + +F +L YDF
Sbjct: 142 HFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDF 177
>pdb|1TYD|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) Mutant With
Thr 51 Replaced By Ser (T51s)
Length = 319
Score = 27.3 bits (59), Expect = 2.8
Identities = 11/36 (30%), Positives = 18/36 (49%)
Query: 163 YFSTNYLKIKEKTFCKLNSWFQLYDFCNSVLNRYDF 198
+FS NY+ KE ++ + +F +L YDF
Sbjct: 142 HFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDF 177
>pdb|1TYA|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) Mutant With
Thr 51 Replaced By Ala (T51a)
Length = 319
Score = 27.3 bits (59), Expect = 2.8
Identities = 11/36 (30%), Positives = 18/36 (49%)
Query: 163 YFSTNYLKIKEKTFCKLNSWFQLYDFCNSVLNRYDF 198
+FS NY+ KE ++ + +F +L YDF
Sbjct: 142 HFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDF 177
>pdb|1TYB|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) Mutant With
Thr 51 Replaced By Gly (T51g)
Length = 319
Score = 27.3 bits (59), Expect = 2.8
Identities = 11/36 (30%), Positives = 18/36 (49%)
Query: 163 YFSTNYLKIKEKTFCKLNSWFQLYDFCNSVLNRYDF 198
+FS NY+ KE ++ + +F +L YDF
Sbjct: 142 HFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDF 177
>pdb|4TS1|A Chain A, Des-(Ile 318-Arg 417)-Tyrosyl-Transfer RNA Synthetase
(E.C.6.1.1.1) (Mutant With Residues 318-417 Deleted)
Complexed With Tyrosine
pdb|4TS1|B Chain B, Des-(Ile 318-Arg 417)-Tyrosyl-Transfer RNA Synthetase
(E.C.6.1.1.1) (Mutant With Residues 318-417 Deleted)
Complexed With Tyrosine
Length = 319
Score = 27.3 bits (59), Expect = 2.8
Identities = 11/36 (30%), Positives = 18/36 (49%)
Query: 163 YFSTNYLKIKEKTFCKLNSWFQLYDFCNSVLNRYDF 198
+FS NY+ KE ++ + +F +L YDF
Sbjct: 142 HFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDF 177
>pdb|2TS1| Tyrosyl-Transfer RNA Synthetase (E.C.6.1.1.1)
pdb|3TS1| Tyrosyl-Transfer RNA Synthetase (E.C.6.1.1.1) Complexed With
Tyrosinyl Adenylate
Length = 419
Score = 27.3 bits (59), Expect = 2.8
Identities = 11/36 (30%), Positives = 18/36 (49%)
Query: 163 YFSTNYLKIKEKTFCKLNSWFQLYDFCNSVLNRYDF 198
+FS NY+ KE ++ + +F +L YDF
Sbjct: 142 HFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDF 177
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 26.9 bits (58), Expect = 3.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 309 IKRYKDIRHYDPIGSKEVLQAIASKKYLLTPNNIDSFKQKLIQTI 353
+ + +DI G +E L+ +A KK+ P D F +K + TI
Sbjct: 44 VDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTI 88
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 26.9 bits (58), Expect = 3.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 309 IKRYKDIRHYDPIGSKEVLQAIASKKYLLTPNNIDSFKQKLIQTI 353
+ + +DI G +E L+ +A KK+ P D F +K + TI
Sbjct: 44 VDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTI 88
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 26.9 bits (58), Expect = 3.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 309 IKRYKDIRHYDPIGSKEVLQAIASKKYLLTPNNIDSFKQKLIQTI 353
+ + +DI G +E L+ +A KK+ P D F +K + TI
Sbjct: 44 VDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTI 88
>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|H Chain H, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 157
Score = 26.2 bits (56), Expect = 6.2
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 234 ENAYKITKQLEDFIQKHSDKHFILWTRTDSLLKYKVYNHT-----ILTRNLNTIHNALKT 288
++A + + L +QK +KH I WT D K I N ++ L
Sbjct: 3 DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSR 62
Query: 289 LLKYPNVE--IHDLRTMPLAKEIKRYKDIRHYDPI 321
L+Y V+ I + + Y +I + DP+
Sbjct: 63 ALRYYYVKNIIKKVNGQKFVYKFVSYPEILNMDPM 97
>pdb|1BC8|C Chain C, Structures Of Sap-1 Bound To Dna Sequences From The E74
And C-Fos Promoters Provide Insights Into How Ets
Proteins Discriminate Between Related Dna Targets
pdb|1BC7|C Chain C, Structures Of Sap-1 Bound To Dna Sequences From The E74
And C-Fos Promoters Provide Insights Into How Ets
Proteins Discriminate Between Related Dna Targets
pdb|1K6O|A Chain A, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 93
Score = 25.8 bits (55), Expect = 8.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 234 ENAYKITKQLEDFIQKHSDKHFILWTRTDSLLK 266
++A + + L +QK +KH I WT D K
Sbjct: 2 DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFK 34
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 25.8 bits (55), Expect = 8.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 309 IKRYKDIRHYDPIGSKEVLQAIASKKYLLTPNNIDSFKQKLIQTI 353
+ + +DI G +E L+ +A KK+ P D F K + TI
Sbjct: 33 VDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTI 77
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.142 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,170,771
Number of Sequences: 13198
Number of extensions: 94340
Number of successful extensions: 215
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 13
length of query: 364
length of database: 2,899,336
effective HSP length: 89
effective length of query: 275
effective length of database: 1,724,714
effective search space: 474296350
effective search space used: 474296350
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)