BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644717|ref|NP_206887.1| hypothetical protein
[Helicobacter pylori 26695]
         (457 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1ZPD|A  Chain A, Pyruvate Decarboxylase From Zymomonas M...    30  0.74
pdb|1K4Y|A  Chain A, Crystal Structure Of Rabbit Liver Carbo...    27  4.8

>pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis
 pdb|1ZPD|B Chain B, Pyruvate Decarboxylase From Zymomonas Mobilis
 pdb|1ZPD|E Chain E, Pyruvate Decarboxylase From Zymomonas Mobilis
 pdb|1ZPD|F Chain F, Pyruvate Decarboxylase From Zymomonas Mobilis
          Length = 568

 Score = 29.6 bits (65), Expect = 0.74
 Identities = 14/42 (33%), Positives = 19/42 (44%)

Query: 206 HLKDYVMPIKDKIPLYTDYGDFYTNARVGELFALIPQSQKTP 247
           HLKDY+  +  K+   T   DF+ +   GEL    P     P
Sbjct: 323 HLKDYLTRLAQKVSKKTGSLDFFKSLNAGELKKAAPADPSAP 364



>pdb|1K4Y|A Chain A, Crystal Structure Of Rabbit Liver Carboxylesterase In
           Complex With 4-Piperidino-Piperidine
          Length = 534

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 21/78 (26%), Positives = 39/78 (49%), Gaps = 3/78 (3%)

Query: 7   VFLFLFVGCTKKDFTLKDLSLPQEASSYLAS-SQNGSNNNQSIDPQALRENLKESYLKAW 65
           +F  L     K+  T +++ L +    Y A+ ++NG+ N + + PQ    + KE YL+  
Sbjct: 449 IFSVLGAPFLKEGATEEEIKLSKMVMKYWANFARNGNPNGEGL-PQWPAYDYKEGYLQIG 507

Query: 66  YSPWLDMKVKSNKKEVFW 83
            +     K+K +K+  FW
Sbjct: 508 ATTQAAQKLK-DKEVAFW 524



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,753,360
Number of Sequences: 13198
Number of extensions: 117585
Number of successful extensions: 248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 2
length of query: 457
length of database: 2,899,336
effective HSP length: 91
effective length of query: 366
effective length of database: 1,698,318
effective search space: 621584388
effective search space used: 621584388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)