BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645479|ref|NP_207654.1| conserved hypothetical
protein [Helicobacter pylori 26695]
         (173 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1JBG|A  Chain A, Crystal Structure Of Mtan, The Bacillus...    26  2.2
pdb|1GP6|A  Chain A, Anthocyanidin Synthase From Arabidopsis...    26  2.8
pdb|1GP4|A  Chain A, Anthocyanidin Synthase From Arabidopsis...    26  2.8

>pdb|1JBG|A Chain A, Crystal Structure Of Mtan, The Bacillus Subtilis
          Multidrug Transporter Activator, N-Terminus
          Length = 109

 Score = 26.2 bits (56), Expect = 2.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 46 YKLLLITNQSGINRGYYTLKDFEQLTQYLQESLFKELGFNLDGI 89
          Y  + + N S +    Y L     L +  Q   FKE+GF LD I
Sbjct: 22 YDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEI 65



>pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
          Complexed With Trans-Dihydroquercetin (With 30 Min
          Exposure To O2)
 pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
          Complexed With Trans-Dihydroquercetin
          Length = 356

 Score = 25.8 bits (55), Expect = 2.8
 Identities = 21/74 (28%), Positives = 35/74 (46%), Gaps = 13/74 (17%)

Query: 9  LDRDGIINIDKGYVSQKEDFEFQKGIFELLKHAKSLGYKLLLITNQSGINRGYYTLKDFE 68
          L + GII+I K Y+  KE+ E    +F  L+  K  G ++  I            LK+ E
Sbjct: 10 LAKSGIISIPKEYIRPKEELESINDVF--LEEKKEDGPQVPTI-----------DLKNIE 56

Query: 69 QLTQYLQESLFKEL 82
             + ++E+  +EL
Sbjct: 57 SDDEKIRENCIEEL 70



>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
          (Selenomethionine Substituted)
          Length = 356

 Score = 25.8 bits (55), Expect = 2.8
 Identities = 21/74 (28%), Positives = 35/74 (46%), Gaps = 13/74 (17%)

Query: 9  LDRDGIINIDKGYVSQKEDFEFQKGIFELLKHAKSLGYKLLLITNQSGINRGYYTLKDFE 68
          L + GII+I K Y+  KE+ E    +F  L+  K  G ++  I            LK+ E
Sbjct: 10 LAKSGIISIPKEYIRPKEELESINDVF--LEEKKEDGPQVPTI-----------DLKNIE 56

Query: 69 QLTQYLQESLFKEL 82
             + ++E+  +EL
Sbjct: 57 SDDEKIRENCIEEL 70



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.321    0.140    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,029,749
Number of Sequences: 13198
Number of extensions: 39417
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 3
length of query: 173
length of database: 2,899,336
effective HSP length: 82
effective length of query: 91
effective length of database: 1,817,100
effective search space: 165356100
effective search space used: 165356100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)