BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645480|ref|NP_207655.1| hypothetical protein
[Helicobacter pylori 26695]
         (246 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1B3O|B  Chain B, Ternary Complex Of Human Type-Ii Inosin...    26  3.7
pdb|1JR1|A  Chain A, Crystal Structure Of Inosine Monophosph...    26  3.7

>pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
           Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
           Dinucleotide
 pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
           Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
           Dinucleotide
          Length = 514

 Score = 26.2 bits (56), Expect = 3.7
 Identities = 15/42 (35%), Positives = 21/42 (49%)

Query: 55  LYNVGRISTYMLLGAIAASLGHSLSVSMGFRGVLFISMGIIL 96
           + NVG I+  + LGA    +G  L+ +    G  F S GI L
Sbjct: 367 IQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRL 408



>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
           In Complex With Mycophenolic Acid
 pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
           In Complex With Mycophenolic Acid
          Length = 514

 Score = 26.2 bits (56), Expect = 3.7
 Identities = 15/42 (35%), Positives = 21/42 (49%)

Query: 55  LYNVGRISTYMLLGAIAASLGHSLSVSMGFRGVLFISMGIIL 96
           + NVG I+  + LGA    +G  L+ +    G  F S GI L
Sbjct: 367 IQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRL 408



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.333    0.143    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,158,131
Number of Sequences: 13198
Number of extensions: 40793
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 2
length of query: 246
length of database: 2,899,336
effective HSP length: 86
effective length of query: 160
effective length of database: 1,764,308
effective search space: 282289280
effective search space used: 282289280
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 53 (25.0 bits)