BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645481|ref|NP_207656.1| hypothetical protein
[Helicobacter pylori 26695]
(223 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4BLC|A Chain A, The Structure Of Orthorhombic Crystals ... 28 1.1
pdb|1TPL|B Chain B, Tyrosine Phenol-Lyase (E.C.4.1.99.2) 26 3.2
pdb|5P2P|A Chain A, Phospholipase A2 (Phosphatide-2-Acyl-Hy... 26 3.2
pdb|3P2P|A Chain A, Phospholipase A2 (Phosphatide-2-Acyl-Hy... 26 3.2
pdb|1TPL|A Chain A, Tyrosine Phenol-Lyase (E.C.4.1.99.2) 25 5.5
pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Baci... 25 9.4
pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furios... 25 9.4
pdb|8OHM| Crystal Structure Of Rna Helicase From Genotype... 25 9.4
pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Baci... 25 9.4
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase >gi... 25 9.4
>pdb|4BLC|A Chain A, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|4BLC|B Chain B, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|4BLC|C Chain C, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|4BLC|D Chain D, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|8CAT|A Chain A, Catalase (E.C.1.11.1.6)
pdb|8CAT|B Chain B, Catalase (E.C.1.11.1.6)
pdb|7CAT|A Chain A, Catalase (E.C.1.11.1.6)
Length = 506
Score = 27.7 bits (60), Expect = 1.1
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 22 RIHFAQNYQLFSSAKEDLKRLGIQKEIFYISV-NEENEKALLNCYPNAKNIAG 73
R HF+ + Q F+SA +D Q FY+ V NEE K L +NIAG
Sbjct: 421 RTHFSGDVQRFNSANDDNV---TQVRTFYLKVLNEEQRKRL------CENIAG 464
>pdb|1TPL|B Chain B, Tyrosine Phenol-Lyase (E.C.4.1.99.2)
Length = 426
Score = 26.2 bits (56), Expect = 3.2
Identities = 13/54 (24%), Positives = 27/54 (49%), Gaps = 2/54 (3%)
Query: 69 KNIAGFFHLETDYVGLGIDRQMACLAVNNGVVVDAG--SAITIDLIKEGKHLGG 120
+ + GF H+ + G G + ++ LA+ G V A+ +D++++ H G
Sbjct: 85 QELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYGAVFVDIVRDEAHDAG 138
>pdb|5P2P|A Chain A, Phospholipase A2 (Phosphatide-2-Acyl-Hydrolase) Mutant
With Trp 3 Replaced By Phe, Leu 31 Replaced By Trp, Asp
59 Replaced By Ser, Ser 60 Replaced By Gly, 62-66
Deleted, Asn 67 Replaced By Tyr (W3F, L31W ,D59S, S60G,
Del(62-66), N67Y) (E.C.3.1.1.4) Complex With (R)
2-Dodecanoyl-Amino-1-Hexanol-Phosphoglycol
pdb|5P2P|B Chain B, Phospholipase A2 (Phosphatide-2-Acyl-Hydrolase) Mutant
With Trp 3 Replaced By Phe, Leu 31 Replaced By Trp, Asp
59 Replaced By Ser, Ser 60 Replaced By Gly, 62-66
Deleted, Asn 67 Replaced By Tyr (W3F, L31W ,D59S, S60G,
Del(62-66), N67Y) (E.C.3.1.1.4) Complex With (R)
2-Dodecanoyl-Amino-1-Hexanol-Phosphoglycol
Length = 119
Score = 26.2 bits (56), Expect = 3.2
Identities = 11/35 (31%), Positives = 19/35 (53%)
Query: 63 NCYPNAKNIAGFFHLETDYVGLGIDRQMACLAVNN 97
NCY +AKN++G + Y + ++ C + NN
Sbjct: 50 NCYRDAKNLSGCYPYTESYSYSCSNTEITCNSKNN 84
>pdb|3P2P|A Chain A, Phospholipase A2 (Phosphatide-2-Acyl-Hydrolase) Mutant
With Asp 59 Replaced By Ser, Ser 60 Replaced By Gly,
62-66 Deleted, Asn 67 Replaced By Tyr (D59S, S60G,
Del(62-66), N67Y) (E.C.3.1.1.4)
pdb|3P2P|B Chain B, Phospholipase A2 (Phosphatide-2-Acyl-Hydrolase) Mutant
With Asp 59 Replaced By Ser, Ser 60 Replaced By Gly,
62-66 Deleted, Asn 67 Replaced By Tyr (D59S, S60G,
Del(62-66), N67Y) (E.C.3.1.1.4)
Length = 119
Score = 26.2 bits (56), Expect = 3.2
Identities = 11/35 (31%), Positives = 19/35 (53%)
Query: 63 NCYPNAKNIAGFFHLETDYVGLGIDRQMACLAVNN 97
NCY +AKN++G + Y + ++ C + NN
Sbjct: 50 NCYRDAKNLSGCYPYTESYSYSCSNTEITCNSKNN 84
>pdb|1TPL|A Chain A, Tyrosine Phenol-Lyase (E.C.4.1.99.2)
Length = 426
Score = 25.4 bits (54), Expect = 5.5
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 69 KNIAGFFHLETDYVGLGIDRQMACLAVNNGVVVDA----GSAITIDLIKEGKHLGG 120
+ + GF H+ + G G + ++ LA+ G V A+ +D++++ H G
Sbjct: 85 QELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYKNGAVFVDIVRDEAHDAG 140
>pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
pdb|1KQP|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
Length = 271
Score = 24.6 bits (52), Expect = 9.4
Identities = 11/30 (36%), Positives = 19/30 (62%), Gaps = 3/30 (10%)
Query: 186 GGDAKYLSAFLPHSVCKERLVFDGMEIALK 215
GGDA++++ LPH ++ D ++ALK
Sbjct: 69 GGDAQFIAVRLPHGTQQDE---DDAQLALK 95
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 24.6 bits (52), Expect = 9.4
Identities = 12/35 (34%), Positives = 21/35 (59%)
Query: 123 LPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKST 157
LP L++ + K+ AK P + ++ +E LPK+T
Sbjct: 53 LPSLSELENFKKELAKSRGLPKEVIEIMEALPKNT 87
>pdb|8OHM| Crystal Structure Of Rna Helicase From Genotype 1b Hepatitis C
Virus: Mechanism Of Unwinding Duplex Rna
Length = 435
Score = 24.6 bits (52), Expect = 9.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 96 NNGVVVDAGSAITIDLIKEGKHLGGC 121
N G + G AI I++I+ G+HL C
Sbjct: 154 NTGEIPFYGKAIPIEVIRGGRHLIFC 179
>pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|2NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|2NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|1NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1EE1|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IH8|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1EE1|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IFX|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IFX|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
Length = 271
Score = 24.6 bits (52), Expect = 9.4
Identities = 11/30 (36%), Positives = 19/30 (62%), Gaps = 3/30 (10%)
Query: 186 GGDAKYLSAFLPHSVCKERLVFDGMEIALK 215
GGDA++++ LPH ++ D ++ALK
Sbjct: 69 GGDAQFIAVRLPHGTQQDE---DDAQLALK 95
>pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 24.6 bits (52), Expect = 9.4
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 8/48 (16%)
Query: 127 AQYIHAYKKSAKILEQPFKALDSLEVLPK--------STRDAVNYGMV 166
A ++HAY++S ++ +K D L K + DA NYG++
Sbjct: 321 AGHVHAYERSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVI 368
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.139 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,264,507
Number of Sequences: 13198
Number of extensions: 49223
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 10
length of query: 223
length of database: 2,899,336
effective HSP length: 85
effective length of query: 138
effective length of database: 1,777,506
effective search space: 245295828
effective search space used: 245295828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)