BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645483|ref|NP_207658.1| hypothetical protein
[Helicobacter pylori 26695]
         (218 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1E5Q|A  Chain A, Ternary Complex Of Saccharopine Reducta...    26  3.1
pdb|1YGP|A  Chain A, Phosphorylated Form Of Yeast Glycogen P...    25  5.3

>pdb|1E5Q|A Chain A, Ternary Complex Of Saccharopine Reductase From Magnaporthe
           Grisea, Nadph And Saccharopine
 pdb|1E5Q|B Chain B, Ternary Complex Of Saccharopine Reductase From Magnaporthe
           Grisea, Nadph And Saccharopine
 pdb|1E5Q|C Chain C, Ternary Complex Of Saccharopine Reductase From Magnaporthe
           Grisea, Nadph And Saccharopine
 pdb|1E5Q|D Chain D, Ternary Complex Of Saccharopine Reductase From Magnaporthe
           Grisea, Nadph And Saccharopine
 pdb|1E5Q|E Chain E, Ternary Complex Of Saccharopine Reductase From Magnaporthe
           Grisea, Nadph And Saccharopine
 pdb|1E5Q|F Chain F, Ternary Complex Of Saccharopine Reductase From Magnaporthe
           Grisea, Nadph And Saccharopine
 pdb|1E5Q|G Chain G, Ternary Complex Of Saccharopine Reductase From Magnaporthe
           Grisea, Nadph And Saccharopine
 pdb|1E5Q|H Chain H, Ternary Complex Of Saccharopine Reductase From Magnaporthe
           Grisea, Nadph And Saccharopine
 pdb|1E5L|A Chain A, Apo Saccharopine Reductase From Magnaporthe Grisea
 pdb|1E5L|B Chain B, Apo Saccharopine Reductase From Magnaporthe Grisea
 pdb|1FF9|A Chain A, Apo Saccharopine Reductase
          Length = 450

 Score = 26.2 bits (56), Expect = 3.1
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 83  QKRLKEVAPELYDLYQFARASERNDANEFKRLS-----QSSNEVVKAFAKYSYASLSRDK 137
           Q  LKE  P      +  +AS  ++ +    +      +S+ E  +  A   +  +  DK
Sbjct: 269 QPFLKEAIPWKEATQKIVKASSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDK 328

Query: 138 NLLEKSPILKEMSALQEVNLLYEENSKDAIKKAHQ 172
            +  +   L  + A  E  + +EE  +D +   H+
Sbjct: 329 KITPRGNALDTLCATLEEKMQFEEGERDLVMLQHK 363



>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
           Phosphate Bound In The Active Site.
 pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
           Phosphate Bound In The Active Site
          Length = 879

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 12/50 (24%), Positives = 26/50 (52%)

Query: 78  NNIALQKRLKEVAPELYDLYQFARASERNDANEFKRLSQSSNEVVKAFAK 127
           N++A Q+R + +   LY    FA+  E     ++   + S +++++ F K
Sbjct: 300 NSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHDILRRFKK 349



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.314    0.130    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,096,392
Number of Sequences: 13198
Number of extensions: 39001
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 2
length of query: 218
length of database: 2,899,336
effective HSP length: 85
effective length of query: 133
effective length of database: 1,777,506
effective search space: 236408298
effective search space used: 236408298
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)