BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645484|ref|NP_207659.1| deoxyuridine
5*-triphosphate nucleotidohydrolase (dut) [Helicobacter pylori 26695]
(145 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MQ7|A Chain A, Crystal Structure Of Dutpase From Mycob... 100 5e-23
pdb|1EU5|A Chain A, Structure Of E. Coli Dutpase At 1.45 A ... 84 6e-18
pdb|1EUW|A Chain A, Atomic Resolution Structure Of E. Coli ... 84 6e-18
pdb|1DUT|A Chain A, Fiv Dutp Pyrophosphatase >gi|1942422|pd... 60 1e-10
pdb|1F7R|A Chain A, Crystal Structures Of Feline Immunodefi... 60 1e-10
pdb|1DUN| Eiav Dutpase Native >gi|3319071|pdb|1DUC| Eiav... 52 2e-08
pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase 25 4.6
pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase 25 4.6
pdb|1JMC|A Chain A, Single Stranded Dna-Binding Domain Of H... 24 6.0
pdb|1FGU|A Chain A, Ssdna-Binding Domain Of The Large Subun... 24 6.0
pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N... 24 7.8
>pdb|1MQ7|A Chain A, Crystal Structure Of Dutpase From Mycobacterium
Tuberculosis (Rv2697c)
Length = 154
Score = 100 bits (250), Expect = 5e-23
Identities = 59/145 (40%), Positives = 81/145 (55%), Gaps = 6/145 (4%)
Query: 3 IKIQKIHPNALIPKYQTDGSSGFDLHAVEEVMIKPHSVGLVKIGICLSLEVGYELQVRTR 62
+ I ++ P +P DG +G DL++ E+V + P LV+ G+ +++ G V R
Sbjct: 5 LAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPR 64
Query: 63 SGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSD-KDFKVQVGDRIAQGVVQKTYKAEF 121
SGLA + ++NSPGT+D YRGEIKV L NL V GDRIAQ +VQ+ E
Sbjct: 65 SGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVEL 124
Query: 122 IECEQLDE-----TSRGSGGFGSTG 141
+E DE TSRG GG GS+G
Sbjct: 125 VEVSSFDEAGLASTSRGDGGHGSSG 149
>pdb|1EU5|A Chain A, Structure Of E. Coli Dutpase At 1.45 A
pdb|1DUP|A Chain A, Deoxyuridine 5'-Triphosphate Nucleotido Hydrolase
(D-Utpase)
pdb|1DUD| Deoxyuridine 5'-Triphosphate Nucleotide Hydrolase (D-Utpase)
Complexed With The Substrate Analogue Deoxyuridine 5'-
Diphosphate (D-Udp)
Length = 152
Score = 84.0 bits (206), Expect = 6e-18
Identities = 48/144 (33%), Positives = 75/144 (51%), Gaps = 3/144 (2%)
Query: 1 MKIKIQKIHPNALIPKYQTDGSSGFDLHAV--EEVMIKPHSVGLVKIGICLSL-EVGYEL 57
+KI ++ +P Y T GS+G DL A + V + P LV G+ + + +
Sbjct: 7 VKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAA 66
Query: 58 QVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTY 117
+ RSGL H +++ N G +D+DY+G++ + + N F +Q G+RIAQ +
Sbjct: 67 MMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVV 126
Query: 118 KAEFIECEQLDETSRGSGGFGSTG 141
+AEF E D T RG GGFG +G
Sbjct: 127 QAEFNLVEDFDATDRGEGGFGHSG 150
>pdb|1EUW|A Chain A, Atomic Resolution Structure Of E. Coli Dutpase
Length = 152
Score = 84.0 bits (206), Expect = 6e-18
Identities = 48/144 (33%), Positives = 75/144 (51%), Gaps = 3/144 (2%)
Query: 1 MKIKIQKIHPNALIPKYQTDGSSGFDLHAV--EEVMIKPHSVGLVKIGICLSL-EVGYEL 57
+KI ++ +P Y T GS+G DL A + V + P LV G+ + + +
Sbjct: 7 VKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAA 66
Query: 58 QVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTY 117
+ RSGL H +++ N G +D+DY+G++ + + N F +Q G+RIAQ +
Sbjct: 67 MMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVV 126
Query: 118 KAEFIECEQLDETSRGSGGFGSTG 141
+AEF E D T RG GGFG +G
Sbjct: 127 QAEFNLVEDFDATDRGEGGFGHSG 150
>pdb|1DUT|A Chain A, Fiv Dutp Pyrophosphatase
pdb|1DUT|B Chain B, Fiv Dutp Pyrophosphatase
Length = 133
Score = 59.7 bits (143), Expect = 1e-10
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 8 IHPNALIPKYQTDGSSGFDLHAVEEVMIKPHSVGLVKIGICLSLEVGYELQVRTRSGLAL 67
I + ++ K D +G+DL A +E+ + P V ++ G+ L L GY + +S +
Sbjct: 3 IEGDGILDKRSED--AGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIG- 59
Query: 68 NHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTYKAEFIECEQL 127
+ + VL G +D YRGEI VI+ N+S K + +IAQ ++ + + +
Sbjct: 60 SKGLDVLG--GVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLIILPCKHEVLEQGKVV 117
Query: 128 DETSRGSGGFGSTGV 142
++ RG G+GSTGV
Sbjct: 118 MDSERGDNGYGSTGV 132
>pdb|1F7R|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7D|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
pdb|1F7D|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
pdb|1F7K|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7K|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7N|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7N|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
Length = 136
Score = 59.7 bits (143), Expect = 1e-10
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 8 IHPNALIPKYQTDGSSGFDLHAVEEVMIKPHSVGLVKIGICLSLEVGYELQVRTRSGLAL 67
I + ++ K D +G+DL A +E+ + P V ++ G+ L L GY + +S +
Sbjct: 3 IEGDGILDKRSED--AGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIG- 59
Query: 68 NHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTYKAEFIECEQL 127
+ + VL G +D YRGEI VI+ N+S K + +IAQ ++ + + +
Sbjct: 60 SKGLDVLG--GVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLIILPCKHEVLEQGKVV 117
Query: 128 DETSRGSGGFGSTGV 142
++ RG G+GSTGV
Sbjct: 118 MDSERGDNGYGSTGV 132
>pdb|1DUN| Eiav Dutpase Native
pdb|1DUC| Eiav Dutpase DudpSTRONTIUM COMPLEX
Length = 134
Score = 52.4 bits (124), Expect = 2e-08
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 16 KYQTDGSSGFDLHAVEEVMIKPHSVGLVKIGICLSLEVGYELQVRTRSGLALNHQVMVLN 75
K + D +GFDL ++MI ++ + + + V +S +A Q +++N
Sbjct: 10 KEKRDEDAGFDLCVPYDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMA--KQGLLIN 67
Query: 76 SPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTYKAEFIECEQLDETSRGSG 135
G +D Y GEI+VI N+ + K+ G + AQ ++ + + ++ + RG
Sbjct: 68 G-GIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDENKISQRGDK 126
Query: 136 GFGSTGV 142
GFGSTGV
Sbjct: 127 GFGSTGV 133
>pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 24.6 bits (52), Expect = 4.6
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 17 YQTDGSSGFDLHAVEEVMIKPHSVGLVKIGICLSLEVGYELQVRTRSGLALNHQVM---- 72
Y + + +D + E + VG +G +L VG Q+R + G+ HQ +
Sbjct: 192 YAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEK 251
Query: 73 -----VLNSPGTVDNDYRGEIK 89
V+ P + + RG I+
Sbjct: 252 GSENAVITVPADLSAEERGRIQ 273
>pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 24.6 bits (52), Expect = 4.6
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 17 YQTDGSSGFDLHAVEEVMIKPHSVGLVKIGICLSLEVGYELQVRTRSGLALNHQVM---- 72
Y + + +D + E + VG +G +L VG Q+R + G+ HQ +
Sbjct: 192 YAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEK 251
Query: 73 -----VLNSPGTVDNDYRGEIK 89
V+ P + + RG I+
Sbjct: 252 GSENAVITVPADLSAEERGRIQ 273
>pdb|1JMC|A Chain A, Single Stranded Dna-Binding Domain Of Human Replication
Protein A Bound To Single Stranded Dna, Rpa70 Subunit,
Residues 183 - 420
Length = 246
Score = 24.3 bits (51), Expect = 6.0
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 25 FDLHAVEEVMIKPHSVGLVKIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTV 80
FD ++++ K + IGIC S E ++ VR+ + + ++++ G V
Sbjct: 124 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKV 179
>pdb|1FGU|A Chain A, Ssdna-Binding Domain Of The Large Subunit Of Replication
Protein A
pdb|1FGU|B Chain B, Ssdna-Binding Domain Of The Large Subunit Of Replication
Protein A
Length = 252
Score = 24.3 bits (51), Expect = 6.0
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 25 FDLHAVEEVMIKPHSVGLVKIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTV 80
FD ++++ K + IGIC S E ++ VR+ + + ++++ G V
Sbjct: 120 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKV 175
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 23.9 bits (50), Expect = 7.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 85 RGEIKVILANLSDKDFKVQVGDRIAQGVVQKTY 117
+G+I +L + + +KV+VGDR QG V Y
Sbjct: 27 KGDILTLLNSTNKDWWKVEVGDR--QGFVPAAY 57
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.136 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 840,560
Number of Sequences: 13198
Number of extensions: 30765
Number of successful extensions: 83
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 11
length of query: 145
length of database: 2,899,336
effective HSP length: 80
effective length of query: 65
effective length of database: 1,843,496
effective search space: 119827240
effective search space used: 119827240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)