BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645487|ref|NP_207662.1| hypothetical protein
[Helicobacter pylori 26695]
(153 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 31 0.072
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 30 0.094
pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complex... 27 1.4
pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complex... 27 1.4
pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin... 26 1.8
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococc... 26 1.8
pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor W... 26 1.8
pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaper... 26 1.8
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 26 2.3
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 26 2.3
pdb|1DEB|A Chain A, Crystal Structure Of The N-Terminal Coi... 25 3.9
pdb|1RMG| Rhamnogalacturonase A From Aspergillus Aculeatus 25 5.2
pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprote... 25 5.2
pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus ... 24 8.8
pdb|1I50|E Chain E, Rna Polymerase Ii Crystal Form Ii At 2.... 24 8.8
pdb|1LLW|A Chain A, Structural Studies On The Synchronizati... 24 8.8
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 30.8 bits (68), Expect = 0.072
Identities = 36/155 (23%), Positives = 73/155 (46%), Gaps = 11/155 (7%)
Query: 2 QEELNAYQQEIEDTREVLKKIRLELKQVQE---ILRKKKSALKGLKQEIYQKKLEKENSR 58
+EE+ A +E++ T+E +K ELK++++ L ++K+ L+ Q + E E R
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 59 LNKETQNTQEDVIFPK---ALEEVEIYTKDNQVIVAKPSKRVFDEGIYLQYRSVLRENRL 115
+ + + + I + +EE E ++ Q K +++ D L+ R+
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975
Query: 116 LKNHLSK---KDFENSLLKIELRD--LHKEIKLYQ 145
L+ + K E+ +L +E ++ L KE KL +
Sbjct: 976 LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010
Score = 30.8 bits (68), Expect = 0.072
Identities = 37/177 (20%), Positives = 81/177 (44%), Gaps = 33/177 (18%)
Query: 1 MQEELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEK---ENS 57
+QE+L A + + E+ ++ + ++++EIL + ++ ++ ++ Q + EK +
Sbjct: 897 LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956
Query: 58 RLNKETQNTQEDVIFPKALEEVEIYTKDNQVIVAKPSKRVFDEGIYL--QYRSVLRENRL 115
L+ E Q +E+ K ++E T D ++ K++ D+ + + Q + +E +L
Sbjct: 957 MLDLEEQLEEEEAARQKL--QLEKVTADGKI------KKMEDDILIMEDQNNKLTKERKL 1008
Query: 116 LKNHLS-------------------KKDFENSLLKIELRDLHKEIKLYQAQNLLKDK 153
L+ +S K E+ + ++E+R L KE K Q +K K
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR-LKKEEKSRQELEKIKRK 1064
Score = 27.3 bits (59), Expect = 0.79
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 1 MQEELNAYQQEIEDTREVLKKIRLELK----QVQEILRKKKSALKGLKQEIYQKKLEKEN 56
M EL ++ E +R+ L+KI+ +L+ + E + + ++ + LK ++ +K+ E +
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099
Query: 57 SRLNKETQNTQEDVIFPKALEEVEIYTKDNQ 87
+ E + +Q++ K + E+E + D Q
Sbjct: 1100 ALARLEDETSQKNNAL-KKIRELESHISDLQ 1129
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 30.4 bits (67), Expect = 0.094
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 24/117 (20%)
Query: 9 QQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEI--------------------- 47
+ I+D ++ L+ RL+ QV K+A + LK+EI
Sbjct: 133 ESNIKDIKKKLEAKRLDRIQVXXRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTAR 192
Query: 48 YQKKLEK---ENSRLNKETQNTQEDVIFPKALEEVEIYTKDNQVIVAKPSKRVFDEG 101
YQ+KLE+ EN R +E + + + E+++ T + Q V K VF +G
Sbjct: 193 YQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEKLKTLTVEVQEXVKNYXKEVFPDG 249
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 26.6 bits (57), Expect = 1.4
Identities = 14/61 (22%), Positives = 30/61 (48%)
Query: 2 QEELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNK 61
QE L + E+E+ ++V L+ +E+ + A++G Q +QK ++ + +
Sbjct: 15 QEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDARMEPVPR 74
Query: 62 E 62
E
Sbjct: 75 E 75
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 26.6 bits (57), Expect = 1.4
Identities = 14/61 (22%), Positives = 30/61 (48%)
Query: 2 QEELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNK 61
QE L + E+E+ ++V L+ +E+ + A++G Q +QK ++ + +
Sbjct: 15 QEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDARMEPVPR 74
Query: 62 E 62
E
Sbjct: 75 E 75
>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 133
Score = 26.2 bits (56), Expect = 1.8
Identities = 12/39 (30%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
Query: 4 ELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKG 42
+LN YQ ++E ++ ++ +R + ++ EIL K S ++G
Sbjct: 9 QLNIYQSQVELIQQQMEAVRATISEL-EILEKTLSDIQG 46
>pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 26.2 bits (56), Expect = 1.8
Identities = 19/58 (32%), Positives = 30/58 (50%), Gaps = 1/58 (1%)
Query: 60 NKETQNTQEDVIFPKALEEVEIYTKDNQVIVAKPSKRVFDEGIYLQYRSVLRENRLLK 117
N+E + DV+ P A+EEV I K+ I AK V + + + +LRE +L+
Sbjct: 281 NEELLELEVDVLAPAAIEEV-ITEKNADNIKAKIVAEVANGPVTPEADDILREKGILQ 337
>pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|C Chain C, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K8T|A Chain A, Crystal Structure Analysis Of The Edema Factor
pdb|1K90|A Chain A, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|A Chain A, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K93|B Chain B, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K90|B Chain B, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
Length = 510
Score = 26.2 bits (56), Expect = 1.8
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 17 EVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNKETQNTQEDVIFPK-A 75
E LK+ + LK +EI KK L ++Y+ ++ EN+ + +T+ + V+ K
Sbjct: 121 EELKENGIILKGKKEIDNGKKYYLLESNNQVYEFRISDENNEVQYKTKEGKITVLGEKFN 180
Query: 76 LEEVEIYTKDNQVIVAKPSKRVFD 99
+E+ K N V KP +D
Sbjct: 181 WRNIEVMAK-NVEGVLKPLTADYD 203
>pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
pdb|1QSD|B Chain B, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
Length = 106
Score = 26.2 bits (56), Expect = 1.8
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 1 MQEELNAYQQEIEDTREVLKKIR-------LELKQVQEILRKKKSALKGLKQEIYQKKLE 53
+ +E YQQE++D + K++ +LK+ +E+L K L L ++I ++ +
Sbjct: 16 LTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKI--REFK 73
Query: 54 KENSRLNKETQNTQE 68
++ + K Q T++
Sbjct: 74 EDLEQFLKTYQGTED 88
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 25.8 bits (55), Expect = 2.3
Identities = 11/46 (23%), Positives = 26/46 (55%)
Query: 8 YQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLE 53
Y++EI+ + LK+ + + + K + ++ L+ E+Y +KL+
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 266
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 25.8 bits (55), Expect = 2.3
Identities = 11/46 (23%), Positives = 26/46 (55%)
Query: 8 YQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLE 53
Y++EI+ + LK+ + + + K + ++ L+ E+Y +KL+
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 266
>pdb|1DEB|A Chain A, Crystal Structure Of The N-Terminal Coiled Coil Domain
From Apc
pdb|1DEB|B Chain B, Crystal Structure Of The N-Terminal Coiled Coil Domain
From Apc
Length = 54
Score = 25.0 bits (53), Expect = 3.9
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 1 MQEELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSAL 40
++ E + +QE+ED L K+ E ++E+L++ + ++
Sbjct: 15 LKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGSI 54
>pdb|1RMG| Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 24.6 bits (52), Expect = 5.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 76 LEEVEIYTKDNQVIVAKPSKRVFDEGIYLQY 106
+ +VE+ KD V V P+ + E IY +
Sbjct: 188 VHDVEVTNKDECVTVKSPANNILVESIYCNW 218
>pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|B Chain B, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|C Chain C, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|D Chain D, Crystal Structure Of Human Apolipoprotein A-I
Length = 201
Score = 24.6 bits (52), Expect = 5.2
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 2 QEELNAYQQEIEDTR-EVLKKIRLELKQVQEIL 33
QEE+ Y+Q++E R E+ + R +L ++QE L
Sbjct: 67 QEEMELYRQKVEPLRAELQEGARQKLHELQEKL 99
>pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 1265
Score = 23.9 bits (50), Expect = 8.8
Identities = 21/68 (30%), Positives = 32/68 (46%), Gaps = 6/68 (8%)
Query: 20 KKIRLELKQVQEI-----LRKKKSALKGLKQEIYQKKLEKENSRLNKETQNTQEDVIF-P 73
K I + L Q+ E+ LRK+ GL + +++E RL + + EDV F
Sbjct: 857 KYISVPLFQMDEVTRTLRLRKRSDIESGLYGRVLAREVEALGRRLEEGRYLSLEDVHFLI 916
Query: 74 KALEEVEI 81
KA E E+
Sbjct: 917 KAAEAGEV 924
>pdb|1I50|E Chain E, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|E Chain E, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I6H|E Chain E, Rna Polymerase Ii Elongation Complex
pdb|1K83|E Chain E, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
pdb|1DZF|A Chain A, Rpb5 From S.Cerevisiae
Length = 215
Score = 23.9 bits (50), Expect = 8.8
Identities = 16/46 (34%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Query: 13 EDTREVLKKIRLELKQVQEILRKKKSAL-KGLKQEIYQKKLEKENS 57
++ RE+LK+ RL+ Q+ I R AL GLK+ K + K +
Sbjct: 159 DEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSET 204
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
Length = 1520
Score = 23.9 bits (50), Expect = 8.8
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 109 VLRENRLLKNHLSKKDFENSLLKIELRDLHKEIKLYQAQNLLKD 152
+ E R L HL + ++ + + +L + +++L + QNL D
Sbjct: 1177 IAEEVRSLLAHLGYRSLDDIIGRTDLLKVRSDVQLSKTQNLTLD 1220
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.132 0.334
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 764,692
Number of Sequences: 13198
Number of extensions: 28645
Number of successful extensions: 101
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 19
length of query: 153
length of database: 2,899,336
effective HSP length: 80
effective length of query: 73
effective length of database: 1,843,496
effective search space: 134575208
effective search space used: 134575208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)