BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645488|ref|NP_207663.1| hydrogenase
expression/formation protein (hypA) [Helicobacter pylori 26695]
(117 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1PFT| N-Terminal Domain Of Tfiib, Nmr 26 1.0
pdb|3EZA|A Chain A, Complex Of The Amino Terminal Domain Of... 25 1.7
pdb|1EZA| Amino Terminal Domain Of Enzyme I From Escheric... 25 1.7
pdb|1ZYM|B Chain B, Amino Terminal Domain Of Enzyme I From ... 25 1.7
pdb|1M1P|A Chain A, P21 Crystal Structure Of The Tetraheme ... 25 2.3
pdb|1A3A|C Chain C, Crystal Structure Of Iia Mannitol From ... 25 3.0
pdb|1E5X|A Chain A, Structure Of Threonine Synthase From Ar... 24 3.9
pdb|1FKX| Murine Adenosine Deaminase (D296a) 23 6.6
pdb|1A4M|A Chain A, Ada Structure Complexed With Purine Rib... 23 6.6
pdb|1FKW| Murine Adenosine Deaminase (D295e) 23 6.6
pdb|1UIO| Adenosine Deaminase (His 238 Ala Mutant) 23 6.6
pdb|1UIP| Adenosine Deaminase (His 238 Glu Mutant) 23 6.6
pdb|2ADA| Adenosine Deaminase (E.C.3.5.4.4) Complexed Wit... 23 6.6
pdb|1QO8|A Chain A, The Structure Of The Open Conformation ... 23 6.6
>pdb|1PFT| N-Terminal Domain Of Tfiib, Nmr
Length = 50
Score = 26.2 bits (56), Expect = 1.0
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 58 CKDAILDIVDEKVELECKDCSHVFKPNALDYG 89
C+ A L E+ E+ C C +V + N +D G
Sbjct: 11 CESAELIYDPERGEIVCAKCGYVIEENIIDMG 42
>pdb|3EZA|A Chain A, Complex Of The Amino Terminal Domain Of Enzyme I And The
Histidine-Containing Phosphocarrier Protein Hpr From
Escherichia Coli Nmr, Restrained Regularized Mean
Structure
Length = 249
Score = 25.4 bits (54), Expect = 1.7
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 25 KIERVVVGIGERSAMDKSLFVSAFETFREE-SLVCKDAILDIVDEKVELE 73
++ER + G + SA +++ A ETF EE + + I+ + DE++E E
Sbjct: 39 EVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQE 88
>pdb|1EZA| Amino Terminal Domain Of Enzyme I From Escherichia Coli Nmr,
Restrained Regularized Mean Structure
pdb|1EZB| Amino Terminal Domain Of Enzyme I From Escherichia Coli, Nmr, 17
Structures
pdb|1EZC| Amino Terminal Domain Of Enzyme I From Escherichia Coli, Nmr, 17
Structures
pdb|1EZD| Amino Terminal Domain Of Enzyme I From Escherichia Coli Nmr, 16
Structures
pdb|2EZA| Amino Terminal Domain Of Enzyme I From Escherichia Coli, Nmr,
Restrained Regularized Mean Structure
pdb|3EZB|A Chain A, Complex Of The Amino Terminal Domain Of Enzyme I And The
Histidine-Containing Phosphocarrier Protein Hpr From
Escherichia Coli
pdb|3EZE|A Chain A, Complex Of The Amino Terminal Domain Of Enzyme I And The
Histidine-Containing Phosphocarrier Protein Hpr From
Escherichia Coli Nmr, Restrained Regularized Mean
Structure
pdb|2EZB| Amino Terminal Domain Of Enzyme I From Escherichia Coli, Nmr, 14
Structures
pdb|2EZC| Amino Terminal Domain Of Enzyme I From Escherichia Coli, Nmr, 14
Structures
Length = 259
Score = 25.4 bits (54), Expect = 1.7
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 25 KIERVVVGIGERSAMDKSLFVSAFETFREE-SLVCKDAILDIVDEKVELE 73
++ER + G + SA +++ A ETF EE + + I+ + DE++E E
Sbjct: 39 EVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQE 88
>pdb|1ZYM|B Chain B, Amino Terminal Domain Of Enzyme I From Escherichia Coli
pdb|1ZYM|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli
Length = 258
Score = 25.4 bits (54), Expect = 1.7
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 25 KIERVVVGIGERSAMDKSLFVSAFETFREE-SLVCKDAILDIVDEKVELE 73
++ER + G + SA +++ A ETF EE + + I+ + DE++E E
Sbjct: 39 EVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQE 88
>pdb|1M1P|A Chain A, P21 Crystal Structure Of The Tetraheme Cytochrome C3
From Shewanella Oneidensis Mr1
pdb|1M1P|B Chain B, P21 Crystal Structure Of The Tetraheme Cytochrome C3
From Shewanella Oneidensis Mr1
pdb|1M1P|C Chain C, P21 Crystal Structure Of The Tetraheme Cytochrome C3
From Shewanella Oneidensis Mr1
pdb|1M1P|D Chain D, P21 Crystal Structure Of The Tetraheme Cytochrome C3
From Shewanella Oneidensis Mr1
pdb|1M1P|E Chain E, P21 Crystal Structure Of The Tetraheme Cytochrome C3
From Shewanella Oneidensis Mr1
pdb|1M1P|F Chain F, P21 Crystal Structure Of The Tetraheme Cytochrome C3
From Shewanella Oneidensis Mr1
pdb|1M1Q|A Chain A, P222 Oxidized Structure Of The Tetraheme Cytochrome C
From Shewanella Oneidensis Mr1
pdb|1M1R|A Chain A, Reduced P222 Crystal Structure Of The Tetraheme
Cytochrome C Of Shewanella Oneidensis Mr1
Length = 91
Score = 25.0 bits (53), Expect = 2.3
Identities = 17/51 (33%), Positives = 23/51 (44%), Gaps = 2/51 (3%)
Query: 47 AFETFREESLVCKDAILDIVDEKVE--LECKDCSHVFKPNALDYGVCEKCH 95
AFE + +S K + +D V + + L C DC V N CE CH
Sbjct: 29 AFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCH 79
>pdb|1A3A|C Chain C, Crystal Structure Of Iia Mannitol From Escherichia Coli
pdb|1A3A|A Chain A, Crystal Structure Of Iia Mannitol From Escherichia Coli
pdb|1A3A|D Chain D, Crystal Structure Of Iia Mannitol From Escherichia Coli
pdb|1A3A|B Chain B, Crystal Structure Of Iia Mannitol From Escherichia Coli
Length = 148
Score = 24.6 bits (52), Expect = 3.0
Identities = 15/47 (31%), Positives = 24/47 (50%)
Query: 26 IERVVVGIGERSAMDKSLFVSAFETFREESLVCKDAILDIVDEKVEL 72
I R+V+GI R+ + S +ES++ + A VDE +EL
Sbjct: 97 IARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTTSVDEVLEL 143
>pdb|1E5X|A Chain A, Structure Of Threonine Synthase From Arabidopsis Thaliana
pdb|1E5X|B Chain B, Structure Of Threonine Synthase From Arabidopsis Thaliana
Length = 486
Score = 24.3 bits (51), Expect = 3.9
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 21 NQAHKIERVVVGIGERSAMDKSLFVSAF 48
N+ K +R VVG+G S D S +SA+
Sbjct: 175 NRLRKXKRPVVGVGCASTGDTSAALSAY 202
>pdb|1FKX| Murine Adenosine Deaminase (D296a)
Length = 349
Score = 23.5 bits (49), Expect = 6.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 MDKSL----FVSAFETFREESLVCKDAILDIVDEKVELECKD 76
MDK L F++ F+ + C++AI I E VE++ K+
Sbjct: 49 MDKPLSLPGFLAKFDYYMPVIAGCREAIKRIAYEFVEMKAKE 90
>pdb|1A4M|A Chain A, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|B Chain B, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|C Chain C, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|D Chain D, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1ADD| Adenosine Deaminase (E.C.3.5.4.4) Complexed With
1-Deaza-Adenosine (Daa)
pdb|1A4L|A Chain A, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|B Chain B, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|C Chain C, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|D Chain D, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
Length = 349
Score = 23.5 bits (49), Expect = 6.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 MDKSL----FVSAFETFREESLVCKDAILDIVDEKVELECKD 76
MDK L F++ F+ + C++AI I E VE++ K+
Sbjct: 49 MDKPLSLPGFLAKFDYYMPVIAGCREAIKRIAYEFVEMKAKE 90
>pdb|1FKW| Murine Adenosine Deaminase (D295e)
Length = 349
Score = 23.5 bits (49), Expect = 6.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 MDKSL----FVSAFETFREESLVCKDAILDIVDEKVELECKD 76
MDK L F++ F+ + C++AI I E VE++ K+
Sbjct: 49 MDKPLSLPGFLAKFDYYMPVIAGCREAIKRIAYEFVEMKAKE 90
>pdb|1UIO| Adenosine Deaminase (His 238 Ala Mutant)
Length = 349
Score = 23.5 bits (49), Expect = 6.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 MDKSL----FVSAFETFREESLVCKDAILDIVDEKVELECKD 76
MDK L F++ F+ + C++AI I E VE++ K+
Sbjct: 49 MDKPLSLPGFLAKFDYYMPVIAGCREAIKRIAYEFVEMKAKE 90
>pdb|1UIP| Adenosine Deaminase (His 238 Glu Mutant)
Length = 349
Score = 23.5 bits (49), Expect = 6.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 MDKSL----FVSAFETFREESLVCKDAILDIVDEKVELECKD 76
MDK L F++ F+ + C++AI I E VE++ K+
Sbjct: 49 MDKPLSLPGFLAKFDYYMPVIAGCREAIKRIAYEFVEMKAKE 90
>pdb|2ADA| Adenosine Deaminase (E.C.3.5.4.4) Complexed With
6-Hydroxyl-1,6-Dihydropurine Ribonucleoside
Length = 352
Score = 23.5 bits (49), Expect = 6.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 MDKSL----FVSAFETFREESLVCKDAILDIVDEKVELECKD 76
MDK L F++ F+ + C++AI I E VE++ K+
Sbjct: 52 MDKPLSLPGFLAKFDYYMPVIAGCREAIKRIAYEFVEMKAKE 93
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 23.5 bits (49), Expect = 6.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 87 DYGVCEKCHSKNVIIT 102
D G C+ CH+K + +T
Sbjct: 11 DMGSCQSCHAKPIKVT 26
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 591,517
Number of Sequences: 13198
Number of extensions: 20630
Number of successful extensions: 47
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 14
length of query: 117
length of database: 2,899,336
effective HSP length: 76
effective length of query: 41
effective length of database: 1,896,288
effective search space: 77747808
effective search space used: 77747808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)