BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645491|ref|NP_207666.1| alkylphosphonate uptake
protein (phnA) [Helicobacter pylori 26695]
(109 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GOF| Galactose Oxidase (E.C.1.1.3.9) (Ph 4.5) >gi|49... 26 0.56
pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of G... 26 0.56
pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring ... 24 2.8
pdb|1CDY| Structure Of T-Cell Surface Glycoprotein Cd4 Mu... 23 3.6
pdb|1CDI| Cd4 (D1d2 Fragment) Type Ii Crystal Form 23 3.6
pdb|1CDU| Structure Of T-Cell Surface Glycoprotein Cd4 Mu... 23 3.6
pdb|1CDH| Cd4 (D1d2 Fragment) Type I Crystal Form >gi|209... 23 3.6
pdb|1WIO|A Chain A, Structure Of T-Cell Surface Glycoprotei... 23 3.6
pdb|1G9M|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein... 23 3.6
pdb|3CD4| Cd4 (N-Terminal Fragment Consisting Of Residues... 23 3.6
pdb|1BWY|A Chain A, Nmr Study Of Bovine Heart Fatty Acid Bi... 23 6.2
pdb|1QF8|A Chain A, Truncated Form Of Casein Kinase Ii Beta... 23 6.2
pdb|1G3T|A Chain A, Cys102ser Dtxr >gi|16975073|pdb|1G3W|A ... 23 6.2
pdb|2TDX| Diphtheria Tox Repressor (C102d Mutant) Complex... 23 6.2
pdb|1BYM|A Chain A, Solution Structures Of The C-Terminal D... 23 6.2
pdb|1BI2|A Chain A, Structure Of Apo- And Holo-Diphtheria T... 23 6.2
pdb|1C0W|B Chain B, Crystal Structure Of The Cobalt-Activat... 23 6.2
pdb|1XPA| Solution Structure Of The Dna- And Rpa-Binding ... 23 6.2
pdb|1FWZ|A Chain A, Glu20ala Dtxr 23 6.2
pdb|1BI1| Structure Of Apo- And Holo-Diphtheria Toxin Rep... 23 6.2
pdb|1G3Y|A Chain A, Arg80ala Dtxr 23 6.2
pdb|1JL9|B Chain B, Crystal Structure Of Human Epidermal Gr... 22 8.1
pdb|1MUP| Major Urinary Protein Complex With 2-(Sec-Butyl... 22 8.1
pdb|1IVO|C Chain C, Crystal Structure Of The Complex Of Hum... 22 8.1
pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltrans... 22 8.1
pdb|1I04|A Chain A, Crystal Structure Of Mouse Major Urinar... 22 8.1
pdb|1JWH|D Chain D, Crystal Structure Of Human Protein Kina... 22 8.1
pdb|1AZV|A Chain A, Familial Als Mutant G37r Cuznsod (Human... 22 8.1
pdb|1CZD|A Chain A, Crystal Structure Of The Processivity C... 22 8.1
pdb|1SPD|A Chain A, Superoxide Dismutase (E.C.1.15.1.1) >gi... 22 8.1
>pdb|1GOF| Galactose Oxidase (E.C.1.1.3.9) (Ph 4.5)
pdb|1GOG| Galactose Oxidase (E.C.1.1.3.9) (Ph 7.0)
pdb|1GOH| Galactose Oxidase (E.C.1.1.3.9) (Apo Form)
Length = 639
Score = 26.2 bits (56), Expect = 0.56
Identities = 20/78 (25%), Positives = 34/78 (42%), Gaps = 6/78 (7%)
Query: 10 CNDAYTYHDGTQLICPSCLYEWNENEVNDEELIVKDCHNNLLQNGDSVILIKDLKVKNSS 69
C D T H Q+ P+ LY N N ++ + ++ G + + D + +S
Sbjct: 515 CGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQS--VKVGGRITISTDSSISKAS 572
Query: 70 LVLKKGTKIKNTKLVNSD 87
L+ + GT T VN+D
Sbjct: 573 LI-RYGTA---THTVNTD 586
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 26.2 bits (56), Expect = 0.56
Identities = 20/78 (25%), Positives = 34/78 (42%), Gaps = 6/78 (7%)
Query: 10 CNDAYTYHDGTQLICPSCLYEWNENEVNDEELIVKDCHNNLLQNGDSVILIKDLKVKNSS 69
C D T H Q+ P+ LY N N ++ + ++ G + + D + +S
Sbjct: 532 CGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQS--VKVGGRITISTDSSISKAS 589
Query: 70 LVLKKGTKIKNTKLVNSD 87
L+ + GT T VN+D
Sbjct: 590 LI-RYGTA---THTVNTD 603
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 23.9 bits (50), Expect = 2.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 22 LICPSCLYEWNENE 35
L+C SCL W E+E
Sbjct: 353 LMCTSCLTSWQESE 366
>pdb|1CDY| Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With Gly 47
Replaced By Ser
Length = 178
Score = 23.5 bits (49), Expect = 3.6
Identities = 18/67 (26%), Positives = 38/67 (55%), Gaps = 10/67 (14%)
Query: 45 DCHNNLLQNGDSVILIKDLKVKNS-SLVLKKGTKIKNTKLV------NSDHNVDCKIEGQ 97
D +L G+ ++IK+LK+++S + + + + + +L+ NSD ++ ++GQ
Sbjct: 56 DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL---LQGQ 112
Query: 98 SLSLKSE 104
SL+L E
Sbjct: 113 SLTLTLE 119
>pdb|1CDI| Cd4 (D1d2 Fragment) Type Ii Crystal Form
Length = 179
Score = 23.5 bits (49), Expect = 3.6
Identities = 18/67 (26%), Positives = 38/67 (55%), Gaps = 10/67 (14%)
Query: 45 DCHNNLLQNGDSVILIKDLKVKNS-SLVLKKGTKIKNTKLV------NSDHNVDCKIEGQ 97
D +L G+ ++IK+LK+++S + + + + + +L+ NSD ++ ++GQ
Sbjct: 57 DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL---LQGQ 113
Query: 98 SLSLKSE 104
SL+L E
Sbjct: 114 SLTLTLE 120
>pdb|1CDU| Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With Phe 43
Replaced By Val
Length = 178
Score = 23.5 bits (49), Expect = 3.6
Identities = 18/67 (26%), Positives = 38/67 (55%), Gaps = 10/67 (14%)
Query: 45 DCHNNLLQNGDSVILIKDLKVKNS-SLVLKKGTKIKNTKLV------NSDHNVDCKIEGQ 97
D +L G+ ++IK+LK+++S + + + + + +L+ NSD ++ ++GQ
Sbjct: 56 DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL---LQGQ 112
Query: 98 SLSLKSE 104
SL+L E
Sbjct: 113 SLTLTLE 119
>pdb|1CDH| Cd4 (D1d2 Fragment) Type I Crystal Form
pdb|1CDJ| Structure Of T-Cell Surface Glycoprotein Cd4
pdb|1JL4|D Chain D, Crystal Structure Of The Human Cd4 N-Terminal Two Domain
Fragment Complexed To A Class Ii Mhc Molecule
Length = 178
Score = 23.5 bits (49), Expect = 3.6
Identities = 18/67 (26%), Positives = 38/67 (55%), Gaps = 10/67 (14%)
Query: 45 DCHNNLLQNGDSVILIKDLKVKNS-SLVLKKGTKIKNTKLV------NSDHNVDCKIEGQ 97
D +L G+ ++IK+LK+++S + + + + + +L+ NSD ++ ++GQ
Sbjct: 56 DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL---LQGQ 112
Query: 98 SLSLKSE 104
SL+L E
Sbjct: 113 SLTLTLE 119
>pdb|1WIO|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIO|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIP|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIP|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIQ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
pdb|1WIQ|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
Length = 363
Score = 23.5 bits (49), Expect = 3.6
Identities = 18/67 (26%), Positives = 38/67 (55%), Gaps = 10/67 (14%)
Query: 45 DCHNNLLQNGDSVILIKDLKVKNS-SLVLKKGTKIKNTKLV------NSDHNVDCKIEGQ 97
D +L G+ ++IK+LK+++S + + + + + +L+ NSD ++ ++GQ
Sbjct: 56 DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL---LQGQ 112
Query: 98 SLSLKSE 104
SL+L E
Sbjct: 113 SLTLTLE 119
>pdb|1G9M|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1GC1|C Chain C, Hiv-1 Gp120 Core Complexed With Cd4 And A Neutralizing
Human Antibody
pdb|1G9N|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
Length = 185
Score = 23.5 bits (49), Expect = 3.6
Identities = 18/67 (26%), Positives = 38/67 (55%), Gaps = 10/67 (14%)
Query: 45 DCHNNLLQNGDSVILIKDLKVKNS-SLVLKKGTKIKNTKLV------NSDHNVDCKIEGQ 97
D +L G+ ++IK+LK+++S + + + + + +L+ NSD ++ ++GQ
Sbjct: 56 DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL---LQGQ 112
Query: 98 SLSLKSE 104
SL+L E
Sbjct: 113 SLTLTLE 119
>pdb|3CD4| Cd4 (N-Terminal Fragment Consisting Of Residues 1-182)
Length = 182
Score = 23.5 bits (49), Expect = 3.6
Identities = 18/67 (26%), Positives = 38/67 (55%), Gaps = 10/67 (14%)
Query: 45 DCHNNLLQNGDSVILIKDLKVKNS-SLVLKKGTKIKNTKLV------NSDHNVDCKIEGQ 97
D +L G+ ++IK+LK+++S + + + + + +L+ NSD ++ ++GQ
Sbjct: 56 DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL---LQGQ 112
Query: 98 SLSLKSE 104
SL+L E
Sbjct: 113 SLTLTLE 119
>pdb|1BWY|A Chain A, Nmr Study Of Bovine Heart Fatty Acid Binding Protein
Length = 132
Score = 22.7 bits (47), Expect = 6.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 53 NGDSVILIKDLKVKNSSLVLKKGTKIKNT 81
NGD+VI+ KN+ + K G + T
Sbjct: 45 NGDTVIIKTQSTFKNTEISFKLGVEFDET 73
>pdb|1QF8|A Chain A, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182)
From Homo Sapiens
pdb|1QF8|B Chain B, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182)
From Homo Sapiens
Length = 182
Score = 22.7 bits (47), Expect = 6.2
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 7 CPKCNDAYT 15
CPKC D YT
Sbjct: 137 CPKCXDVYT 145
>pdb|1G3T|A Chain A, Cys102ser Dtxr
pdb|1G3W|A Chain A, Cd-Cys102ser Dtxr
pdb|1G3S|A Chain A, Cys102ser Dtxr
pdb|1G3T|B Chain B, Cys102ser Dtxr
Length = 226
Score = 22.7 bits (47), Expect = 6.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 37 NDEELIVKDCHNNLLQNGDSVILIKDL 63
++ E++ +D H L NG V L+ DL
Sbjct: 191 SEVEIVDRDGHITLSHNGKDVELLDDL 217
>pdb|2TDX| Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel
pdb|1DDN|A Chain A, Diphtheria Tox Repressor (C102d Mutant) Complexed With
Nickel And With Tox Dna Operator
pdb|1DDN|B Chain B, Diphtheria Tox Repressor (C102d Mutant) Complexed With
Nickel And With Tox Dna Operator
pdb|1DDN|C Chain C, Diphtheria Tox Repressor (C102d Mutant) Complexed With
Nickel And With Tox Dna Operator
pdb|1DDN|D Chain D, Diphtheria Tox Repressor (C102d Mutant) Complexed With
Nickel And With Tox Dna Operator
Length = 226
Score = 22.7 bits (47), Expect = 6.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 37 NDEELIVKDCHNNLLQNGDSVILIKDL 63
++ E++ +D H L NG V L+ DL
Sbjct: 191 SEVEIVDRDGHITLSHNGKDVELLDDL 217
>pdb|1BYM|A Chain A, Solution Structures Of The C-Terminal Domain Of
Diphtheria Toxin Repressor
Length = 97
Score = 22.7 bits (47), Expect = 6.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 37 NDEELIVKDCHNNLLQNGDSVILIKDL 63
++ E++ +D H L NG V L+ DL
Sbjct: 62 SEVEIVDRDGHITLSHNGKDVELLDDL 88
>pdb|1BI2|A Chain A, Structure Of Apo- And Holo-Diphtheria Toxin Repressor
pdb|1BI2|B Chain B, Structure Of Apo- And Holo-Diphtheria Toxin Repressor
pdb|1DPR|A Chain A, Diphtheria, Virulence, Dna-Binding, Iron-Regulation
Repressor Mol_id: 1; Molecule: Diphtheria Tox Repressor;
Chain: A, B; Synonym: Dtxr; Engineered: Yes
pdb|1DPR|B Chain B, Diphtheria, Virulence, Dna-Binding, Iron-Regulation
Repressor Mol_id: 1; Molecule: Diphtheria Tox Repressor;
Chain: A, B; Synonym: Dtxr; Engineered: Yes
pdb|2DTR| Structure Of Diphtheria Toxin Repressor
Length = 226
Score = 22.7 bits (47), Expect = 6.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 37 NDEELIVKDCHNNLLQNGDSVILIKDL 63
++ E++ +D H L NG V L+ DL
Sbjct: 191 SEVEIVDRDGHITLSHNGKDVELLDDL 217
>pdb|1C0W|B Chain B, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
pdb|1C0W|A Chain A, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
pdb|1C0W|C Chain C, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
pdb|1C0W|D Chain D, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
Length = 225
Score = 22.7 bits (47), Expect = 6.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 37 NDEELIVKDCHNNLLQNGDSVILIKDL 63
++ E++ +D H L NG V L+ DL
Sbjct: 190 SEVEIVDRDGHITLSHNGKDVELLDDL 216
>pdb|1XPA| Solution Structure Of The Dna- And Rpa-Binding Domain Of The Human
Repair Factor Xpa, Nmr, 1 Structure
Length = 122
Score = 22.7 bits (47), Expect = 6.2
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 3 DLPPCPKCNDAYTYHD-------GTQLICPSCLYEWNENEVNDEELIVKDCHNNLLQNGD 55
DLP C C DA H + + C E E + + ++ K+ H++ Q GD
Sbjct: 25 DLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPL--KFIVKKNPHHS--QWGD 80
Query: 56 SVILIKDLKVKNSSLVLKKGTKIKNTKLVNSDHNVDCK 93
+ +K VK S V ++ K V ++ K
Sbjct: 81 MKLYLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMK 118
>pdb|1FWZ|A Chain A, Glu20ala Dtxr
Length = 226
Score = 22.7 bits (47), Expect = 6.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 37 NDEELIVKDCHNNLLQNGDSVILIKDL 63
++ E++ +D H L NG V L+ DL
Sbjct: 191 SEVEIVDRDGHITLSHNGKDVELLDDL 217
>pdb|1BI1| Structure Of Apo- And Holo-Diphtheria Toxin Repressor
pdb|1BI0| Structure Of Apo- And Holo-Diphtheria Toxin Repressor
pdb|1BI3|A Chain A, Structure Of Apo- And Holo-Diphtheria Toxin Repressor
pdb|1BI3|B Chain B, Structure Of Apo- And Holo-Diphtheria Toxin Repressor
Length = 226
Score = 22.7 bits (47), Expect = 6.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 37 NDEELIVKDCHNNLLQNGDSVILIKDL 63
++ E++ +D H L NG V L+ DL
Sbjct: 191 SEVEIVDRDGHITLSHNGKDVELLDDL 217
>pdb|1G3Y|A Chain A, Arg80ala Dtxr
Length = 226
Score = 22.7 bits (47), Expect = 6.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 37 NDEELIVKDCHNNLLQNGDSVILIKDL 63
++ E++ +D H L NG V L+ DL
Sbjct: 191 SEVEIVDRDGHITLSHNGKDVELLDDL 217
>pdb|1JL9|B Chain B, Crystal Structure Of Human Epidermal Growth Factor
pdb|1JL9|A Chain A, Crystal Structure Of Human Epidermal Growth Factor
Length = 51
Score = 22.3 bits (46), Expect = 8.1
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 6/23 (26%)
Query: 7 CPKCNDAYTYHDGTQLICPSCLY 29
CP +D Y HDG C+Y
Sbjct: 6 CPLSHDGYCLHDGV------CMY 22
>pdb|1MUP| Major Urinary Protein Complex With 2-(Sec-Butyl) Thiazoline
Length = 166
Score = 22.3 bits (46), Expect = 8.1
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 31 WNENEVNDEE---LIVKDCHNNLLQNGDSVILIKDLKVKNSSLVLK 73
+N ++N E ++ D + NG+ + ++ + V +SLVLK
Sbjct: 14 FNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLK 59
>pdb|1IVO|C Chain C, Crystal Structure Of The Complex Of Human Epidermal
Growth Factor And Receptor Extracellular Domains.
pdb|1IVO|D Chain D, Crystal Structure Of The Complex Of Human Epidermal
Growth Factor And Receptor Extracellular Domains
Length = 53
Score = 22.3 bits (46), Expect = 8.1
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 6/23 (26%)
Query: 7 CPKCNDAYTYHDGTQLICPSCLY 29
CP +D Y HDG C+Y
Sbjct: 6 CPLSHDGYCLHDGV------CMY 22
>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1COZ|B Chain B, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
Length = 129
Score = 22.3 bits (46), Expect = 8.1
Identities = 9/21 (42%), Positives = 12/21 (56%)
Query: 87 DHNVDCKIEGQSLSLKSEFLK 107
DHN+D + G K +FLK
Sbjct: 83 DHNIDVFVMGDDWEGKFDFLK 103
>pdb|1I04|A Chain A, Crystal Structure Of Mouse Major Urinary Protein-I From
Mouse Liver
pdb|1I06|A Chain A, Crystal Structure Of Mouse Major Urinary Protein (Mup-I)
Complexed With Sec-Butyl-Thiazoline
pdb|1I05|A Chain A, Crystal Structure Of Mouse Major Urinary Protein (Mup-I)
Complexed With Hydroxy-Methyl-Heptanone
Length = 180
Score = 22.3 bits (46), Expect = 8.1
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 31 WNENEVNDEE---LIVKDCHNNLLQNGDSVILIKDLKVKNSSLVLK 73
+N ++N E ++ D + NG+ + ++ + V +SLVLK
Sbjct: 28 FNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLK 73
>pdb|1JWH|D Chain D, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
pdb|1JWH|C Chain C, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
Length = 215
Score = 22.3 bits (46), Expect = 8.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 7 CPKCNDAYT 15
CPKC D YT
Sbjct: 137 CPKCMDVYT 145
>pdb|1AZV|A Chain A, Familial Als Mutant G37r Cuznsod (Human)
pdb|1AZV|B Chain B, Familial Als Mutant G37r Cuznsod (Human)
Length = 153
Score = 22.3 bits (46), Expect = 8.1
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 53 NGDSVILIKDLKVKNSSLVLKKGTKIKNTKLVNSDHNVDCKIEG 96
+GD I+ + L V + L KG ++TK N+ + C + G
Sbjct: 107 SGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIG 150
>pdb|1CZD|A Chain A, Crystal Structure Of The Processivity Clamp Gp45 From
Bacteriophage T4
pdb|1CZD|B Chain B, Crystal Structure Of The Processivity Clamp Gp45 From
Bacteriophage T4
pdb|1CZD|C Chain C, Crystal Structure Of The Processivity Clamp Gp45 From
Bacteriophage T4
Length = 228
Score = 22.3 bits (46), Expect = 8.1
Identities = 13/40 (32%), Positives = 20/40 (49%), Gaps = 1/40 (2%)
Query: 55 DSVILIKDLKVKNSSLVLKKGTKIKNTKLVNSDHNVDCKI 94
D+ L+K+ NS ++LK G I T+ VN + I
Sbjct: 6 DTTALLKNFATINSGIMLKSGQFIM-TRAVNGTTYAEANI 44
>pdb|1SPD|A Chain A, Superoxide Dismutase (E.C.1.15.1.1)
pdb|1SPD|B Chain B, Superoxide Dismutase (E.C.1.15.1.1)
Length = 154
Score = 22.3 bits (46), Expect = 8.1
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 53 NGDSVILIKDLKVKNSSLVLKKGTKIKNTKLVNSDHNVDCKIEG 96
+GD I+ + L V + L KG ++TK N+ + C + G
Sbjct: 108 SGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIG 151
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 652,218
Number of Sequences: 13198
Number of extensions: 24203
Number of successful extensions: 64
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 30
length of query: 109
length of database: 2,899,336
effective HSP length: 85
effective length of query: 24
effective length of database: 1,777,506
effective search space: 42660144
effective search space used: 42660144
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)