BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645493|ref|NP_207668.1| hypothetical protein
[Helicobacter pylori 26695]
(291 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases Fro... 30 0.43
pdb|1CQP|A Chain A, Crystal Structure Analysis Of The Compl... 28 1.2
pdb|1DGQ|A Chain A, Nmr Solution Structure Of The Inserted ... 28 1.2
pdb|1LFA|A Chain A, Cd11a I-Domain With Bound Mn++ >gi|1942... 27 3.6
pdb|1OXY| Hemocyanin Subunit Ii Complexed With Oxygen 27 3.6
pdb|1D7P|M Chain M, Crystal Structure Of The C2 Domain Of H... 26 4.7
pdb|1IQD|C Chain C, Human Factor Viii C2 Domain Complexed T... 26 4.7
pdb|1G01|A Chain A, Alkaline Cellulase K Catalytic Domain >... 26 4.7
pdb|1NOL| Oxygenated Hemocyanin (Subunit Type Ii) >gi|494... 25 8.0
pdb|2FMT|A Chain A, Methionyl-Trnafmet Formyltransferase Co... 25 8.0
pdb|2LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus... 25 8.0
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|F Chain F, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|H Chain H, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|J Chain J, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|L Chain L, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|N Chain N, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|P Chain P, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 149
Score = 29.6 bits (65), Expect = 0.43
Identities = 15/43 (34%), Positives = 25/43 (57%), Gaps = 2/43 (4%)
Query: 130 DASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKEN 172
D + +AN +KG TP+E + F IK++ + ++A KEN
Sbjct: 103 DVTCKTVANMIKGKTPEEIRKTFN--IKNDFTEEEEAQVRKEN 143
>pdb|1CQP|A Chain A, Crystal Structure Analysis Of The Complex Lfa-1 (Cd11a) I-
Domain LOVASTATIN AT 2.6 A RESOLUTION
pdb|1CQP|B Chain B, Crystal Structure Analysis Of The Complex Lfa-1 (Cd11a) I-
Domain LOVASTATIN AT 2.6 A RESOLUTION
Length = 182
Score = 28.1 bits (61), Expect = 1.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 88 VDFLKSTQKKQVHLSYEIASYQLNERLFETSDFVAMGRYERDDASVANIANQL 140
+DF+K KK + SY+ A+ Q + DF +++ DA + ++ + L
Sbjct: 24 LDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKWKDPDALLKHVKHML 76
>pdb|1DGQ|A Chain A, Nmr Solution Structure Of The Inserted Domain Of Human
Leukocyte Function Associated Antigen-1
Length = 188
Score = 28.1 bits (61), Expect = 1.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 88 VDFLKSTQKKQVHLSYEIASYQLNERLFETSDFVAMGRYERDDASVANIANQL 140
+DF+K KK + SY+ A+ Q + DF +++ DA + ++ + L
Sbjct: 28 LDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKWKDPDALLKHVKHML 80
>pdb|1LFA|A Chain A, Cd11a I-Domain With Bound Mn++
pdb|1ZOP|A Chain A, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOP|B Chain B, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOO|A Chain A, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOO|B Chain B, Cd11a I-Domain With Bound Magnesium Ion
pdb|1LFA|B Chain B, Cd11a I-Domain With Bound Mn++
pdb|1ZON| Cd11a I-Domain Without Bound Cation
Length = 187
Score = 26.6 bits (57), Expect = 3.6
Identities = 14/53 (26%), Positives = 26/53 (48%)
Query: 88 VDFLKSTQKKQVHLSYEIASYQLNERLFETSDFVAMGRYERDDASVANIANQL 140
+DF+K KK + SY+ A+ Q + DF + + DA + ++ + L
Sbjct: 27 LDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHML 79
>pdb|1OXY| Hemocyanin Subunit Ii Complexed With Oxygen
Length = 628
Score = 26.6 bits (57), Expect = 3.6
Identities = 27/109 (24%), Positives = 43/109 (38%), Gaps = 9/109 (8%)
Query: 92 KSTQKKQVHLSYEIASYQLNERLFETSDFVAMGRYERDDASVANIANQLKGTTPKESVRN 151
+S + K HL +E SY +N + SD A R + N++K + +
Sbjct: 427 RSIKAKYYHLDHEPFSYAVNVQNNSASDKHATVRIFLAP-KYDELGNEIKADELRRTAI- 484
Query: 152 FYAFIKHEMPKRQKALEGKENLPKRESLPWFATISKESMFVSLCHACGI 200
E+ K + L +N R SL T+S + F L H G+
Sbjct: 485 -------ELDKFKTDLHPGKNTVVRHSLDSSVTLSHQPTFEDLLHGVGL 526
>pdb|1D7P|M Chain M, Crystal Structure Of The C2 Domain Of Human Factor Viii
At 1.5 A Resolution At 1.5 A
Length = 159
Score = 26.2 bits (56), Expect = 4.7
Identities = 11/30 (36%), Positives = 19/30 (62%)
Query: 64 SNVHLQGNHASYKSMLNFGVPYLQVDFLKS 93
+ +HLQG +++ +N +LQVDF K+
Sbjct: 38 ARLHLQGRSNAWRPQVNNPKEWLQVDFQKT 67
>pdb|1IQD|C Chain C, Human Factor Viii C2 Domain Complexed To Human
Monoclonal Bo2c11 Fab
Length = 156
Score = 26.2 bits (56), Expect = 4.7
Identities = 11/30 (36%), Positives = 19/30 (62%)
Query: 64 SNVHLQGNHASYKSMLNFGVPYLQVDFLKS 93
+ +HLQG +++ +N +LQVDF K+
Sbjct: 35 ARLHLQGRSNAWRPQVNNPKEWLQVDFQKT 64
>pdb|1G01|A Chain A, Alkaline Cellulase K Catalytic Domain
pdb|1G0C|A Chain A, Alkaline Cellulase K Catalytic Domain-Cellobiose Complex
Length = 364
Score = 26.2 bits (56), Expect = 4.7
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 164 QKALEGKENLPKR------ESLPWFATISKESMFVSLCHACGIKSAEVQGLKLGQNSVVK 217
Q L G++ P + L WF I E+ FV+L + G + + +G+N
Sbjct: 26 QLTLAGEDGTPVQLRGMSTHGLQWFGEIVNENAFVALSNDWGSNMIRL-AMYIGENGYAT 84
Query: 218 NAPRVEVYLKDSFLAFD 234
N ++ + LAF+
Sbjct: 85 NPEVKDLVYEGIELAFE 101
>pdb|1NOL| Oxygenated Hemocyanin (Subunit Type Ii)
pdb|1LLA| Hemocyanin (Subunit Type Ii)
Length = 628
Score = 25.4 bits (54), Expect = 8.0
Identities = 26/109 (23%), Positives = 43/109 (38%), Gaps = 9/109 (8%)
Query: 92 KSTQKKQVHLSYEIASYQLNERLFETSDFVAMGRYERDDASVANIANQLKGTTPKESVRN 151
+S + + HL +E SY +N + SD A R + N++K + +
Sbjct: 427 RSIKARYYHLDHEPFSYAVNVQNNSASDKHATVRIFLAP-KYDELGNEIKADELRRTAI- 484
Query: 152 FYAFIKHEMPKRQKALEGKENLPKRESLPWFATISKESMFVSLCHACGI 200
E+ K + L +N R SL T+S + F L H G+
Sbjct: 485 -------ELDKFKTDLHPGKNTVVRHSLDSSVTLSHQPTFEDLLHGVGL 526
>pdb|2FMT|A Chain A, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl-Methionyl-Trnafmet
pdb|2FMT|B Chain B, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl-Methionyl-Trnafmet
pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|1FMT|B Chain B, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
Length = 314
Score = 25.4 bits (54), Expect = 8.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 200 IKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHKEVFIPLNR 248
I A QG+++ + N ++ K + A D N+ +E F+P NR
Sbjct: 264 ILEANKQGIQVATGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNR 312
>pdb|2LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus
pdb|3LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus With
Phosphocholine Bound
pdb|1LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus
Length = 299
Score = 25.4 bits (54), Expect = 8.0
Identities = 11/46 (23%), Positives = 25/46 (53%)
Query: 243 FIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSY 288
+ P N++++ Q+ + L TFG ++ +G G + F + ++Y
Sbjct: 99 YAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINY 144
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.133 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,509,011
Number of Sequences: 13198
Number of extensions: 57597
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 11
length of query: 291
length of database: 2,899,336
effective HSP length: 87
effective length of query: 204
effective length of database: 1,751,110
effective search space: 357226440
effective search space used: 357226440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)