BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645496|ref|NP_207671.1| Holliday junction
endodeoxyribonuclease (ruvC) [Helicobacter pylori 26695]
(157 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HJR|A Chain A, Holliday Junction Resolvase (E.C.3.1.22... 87 9e-19
pdb|1K8A|D Chain D, Co-Crystal Structure Of Carbomycin A Bo... 27 1.4
pdb|1GIY|E Chain E, Crystal Structure Of The Ribosome At 5.... 27 1.4
pdb|1FFK|B Chain B, Crystal Structure Of The Large Ribosoma... 27 1.4
pdb|1OFG|A Chain A, Glucose-Fructose Oxidoreductase >gi|209... 26 2.4
pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Del... 26 2.4
pdb|1H6D|A Chain A, Oxidized Precursor Form Of Glucose-Fruc... 26 2.4
pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannasch... 25 3.1
pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxyla... 25 4.1
pdb|2DKB| 2,2-Dialkylglycine Decarboxylase (Pyruvate) (Dg... 25 4.1
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2... 25 4.1
pdb|1DGD| Dialkylglycine Decarboxylase (Pyruvate) (Dgd) (... 25 4.1
pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant 25 5.3
pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant 25 5.3
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex O... 25 5.3
pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:a... 25 5.3
pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With As... 25 5.3
pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mut... 25 5.3
pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mut... 25 5.3
pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6) >gi|493890|pdb|1BL... 25 5.3
pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphyl... 25 5.3
pdb|1INP| Inositol Polyphosphate 1-Phosphatase (1-Ptase) ... 24 7.0
pdb|1AVC| Bovine Annexin Vi (Calcium-Bound) 24 7.0
pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mi... 24 9.1
>pdb|1HJR|A Chain A, Holliday Junction Resolvase (E.C.3.1.22.4) (Ruvc)
pdb|1HJR|B Chain B, Holliday Junction Resolvase (E.C.3.1.22.4) (Ruvc)
pdb|1HJR|C Chain C, Holliday Junction Resolvase (E.C.3.1.22.4) (Ruvc)
pdb|1HJR|D Chain D, Holliday Junction Resolvase (E.C.3.1.22.4) (Ruvc)
Length = 158
Score = 87.0 bits (214), Expect = 9e-19
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 1/148 (0%)
Query: 3 ILGIDPGSRKCGYAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDCLLDRYEVNE 62
ILGIDPGSR GY +I +LS + +G I L ++ + + ++ +++ +
Sbjct: 3 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 62
Query: 63 VAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKEQVA 122
AIE +F N S +KL Q RG + + + EY QVK+ + G G A K QV
Sbjct: 63 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 122
Query: 123 FMVKRLLNITSEIKPLDISDAIAVAITH 150
MV+ LL + + D +DA+A+AITH
Sbjct: 123 HMVRTLLKLPAN-PQADAADALAIAITH 149
>pdb|1K8A|D Chain D, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|D Chain D, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|D Chain D, Co-Crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|D Chain D, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|D Chain D, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1JJ2|B Chain B, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|B Chain B, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
Length = 337
Score = 26.6 bits (57), Expect = 1.4
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 94 RIGNFSEYTPLQVKKALTGNGKAAKEQVAFMVKRLLNITSEIKP 137
RIGN + P +V+ + G+ Q + KRL++I +P
Sbjct: 235 RIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEP 278
>pdb|1GIY|E Chain E, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
Length = 338
Score = 26.6 bits (57), Expect = 1.4
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 94 RIGNFSEYTPLQVKKALTGNGKAAKEQVAFMVKRLLNITSEIKP 137
RIGN + P +V+ + G+ Q + KRL++I +P
Sbjct: 235 RIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEP 278
>pdb|1FFK|B Chain B, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 338
Score = 26.6 bits (57), Expect = 1.4
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 94 RIGNFSEYTPLQVKKALTGNGKAAKEQVAFMVKRLLNITSEIKP 137
RIGN + P +V+ + G+ Q + KRL++I +P
Sbjct: 235 RIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEP 278
>pdb|1OFG|A Chain A, Glucose-Fructose Oxidoreductase
pdb|1OFG|B Chain B, Glucose-Fructose Oxidoreductase
pdb|1OFG|C Chain C, Glucose-Fructose Oxidoreductase
pdb|1OFG|D Chain D, Glucose-Fructose Oxidoreductase
pdb|1OFG|E Chain E, Glucose-Fructose Oxidoreductase
pdb|1OFG|F Chain F, Glucose-Fructose Oxidoreductase
Length = 381
Score = 25.8 bits (55), Expect = 2.4
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 8 PGSRKCGYAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDCLLDRYEVNEVAIED 67
P R+ GYAI+ L+ I GF +R++ + E + Y V+ I D
Sbjct: 27 PEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYD 86
>pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
pdb|1OME|B Chain B, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
Length = 242
Score = 25.8 bits (55), Expect = 2.4
Identities = 21/72 (29%), Positives = 31/72 (42%), Gaps = 11/72 (15%)
Query: 93 ERIGNFSEYTPLQVKKALT---GNGKAAKEQVAFMVKRLLNITS--------EIKPLDIS 141
+++ N TP K L NGK +KE F++ +LN S K ++
Sbjct: 125 DKVTNPDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVA 184
Query: 142 DAIAVAITHAQR 153
D AIT+A R
Sbjct: 185 DKSGQAITYASR 196
>pdb|1H6D|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|C Chain C, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|D Chain D, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|E Chain E, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|I Chain I, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|K Chain K, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|B Chain B, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|F Chain F, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|G Chain G, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|H Chain H, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|J Chain J, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|L Chain L, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6C|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Succinate
pdb|1H6C|B Chain B, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Succinate
pdb|1H6A|A Chain A, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis
pdb|1H6A|B Chain B, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis
pdb|1H6B|A Chain A, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6B|B Chain B, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
Length = 433
Score = 25.8 bits (55), Expect = 2.4
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 8 PGSRKCGYAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDCLLDRYEVNEVAIED 67
P R+ GYAI+ L+ I GF +R++ + E + Y V+ I D
Sbjct: 79 PEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYD 138
>pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77| Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 25.4 bits (54), Expect = 3.1
Identities = 16/46 (34%), Positives = 27/46 (57%), Gaps = 4/46 (8%)
Query: 34 NITTTRLQEQILDLIEALDCLLDRYEVNEVAIEDIFFG--YNPKSV 77
N+TTT+ ++++L E L+ L R ++++ IF G YNP V
Sbjct: 187 NLTTTKEMPELIELNEVLEDL--RISLDDLIDIAIFMGTDYNPGGV 230
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
Length = 433
Score = 25.0 bits (53), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 34 NITTTRLQEQILDLIEALDCLLD 56
N+ RL+ +LDL+E DC+ D
Sbjct: 331 NVMGDRLRRGLLDLMERFDCIGD 353
>pdb|2DKB| 2,2-Dialkylglycine Decarboxylase (Pyruvate) (Dgd) (E.C.4.1.1.64)
pdb|1DKA| 2,2-Dialkylglycine Decarboxylase (Pyruvate) (E.C.4.1.1.64)
Length = 432
Score = 25.0 bits (53), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 34 NITTTRLQEQILDLIEALDCLLD 56
N+ RL+ +LDL+E DC+ D
Sbjct: 330 NVMGDRLRRGLLDLMERFDCIGD 352
>pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 25.0 bits (53), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 34 NITTTRLQEQILDLIEALDCLLD 56
N+ RL+ +LDL+E DC+ D
Sbjct: 331 NVMGDRLRRGLLDLMERFDCIGD 353
>pdb|1DGD| Dialkylglycine Decarboxylase (Pyruvate) (Dgd) (E.C.4.1.1.64)
Mutant With Gln 15 Replaced By His (Q15h) Complexed With
Lithium+ In Metal-Binding Site 1
pdb|1DGE| Dialkylglycine Decarboxylase (Pyruvate) (Dgd) (E.C.4.1.1.64)
Mutant With Gln 15 Replaced By His (Q15h) Complexed With
Rubidium+ In Metal-Binding Sites I And 2
Length = 432
Score = 25.0 bits (53), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 34 NITTTRLQEQILDLIEALDCLLD 56
N+ RL+ +LDL+E DC+ D
Sbjct: 330 NVMGDRLRRGLLDLMERFDCIGD 352
>pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant
Length = 258
Score = 24.6 bits (52), Expect = 5.3
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 8/52 (15%)
Query: 110 LTGNGKAAKEQVAFMVKRLLNITS--------EIKPLDISDAIAVAITHAQR 153
L NGK +KE F++ +LN S K ++D AIT+A R
Sbjct: 161 LIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASR 212
>pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant
Length = 258
Score = 24.6 bits (52), Expect = 5.3
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 8/52 (15%)
Query: 110 LTGNGKAAKEQVAFMVKRLLNITS--------EIKPLDISDAIAVAITHAQR 153
L NGK +KE F++ +LN S K ++D AIT+A R
Sbjct: 161 LIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASR 212
>pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
Length = 258
Score = 24.6 bits (52), Expect = 5.3
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 8/52 (15%)
Query: 110 LTGNGKAAKEQVAFMVKRLLNITS--------EIKPLDISDAIAVAITHAQR 153
L NGK +KE F++ +LN S K ++D AIT+A R
Sbjct: 161 LIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASR 212
>pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:asn170asp Mutant
Length = 258
Score = 24.6 bits (52), Expect = 5.3
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 8/52 (15%)
Query: 110 LTGNGKAAKEQVAFMVKRLLNITS--------EIKPLDISDAIAVAITHAQR 153
L NGK +KE F++ +LN S K ++D AIT+A R
Sbjct: 161 LIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASR 212
>pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With Asp 179 Replaced By
Asn (D179n)
Length = 257
Score = 24.6 bits (52), Expect = 5.3
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 8/52 (15%)
Query: 110 LTGNGKAAKEQVAFMVKRLLNITS--------EIKPLDISDAIAVAITHAQR 153
L NGK +KE F++ +LN S K ++D AIT+A R
Sbjct: 160 LIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASR 211
>pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 120k
pdb|1DJB| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 298k
Length = 257
Score = 24.6 bits (52), Expect = 5.3
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 8/52 (15%)
Query: 110 LTGNGKAAKEQVAFMVKRLLNITS--------EIKPLDISDAIAVAITHAQR 153
L NGK +KE F++ +LN S K ++D AIT+A R
Sbjct: 160 LIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASR 211
>pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mutant, At 298k
Length = 258
Score = 24.6 bits (52), Expect = 5.3
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 8/52 (15%)
Query: 110 LTGNGKAAKEQVAFMVKRLLNITS--------EIKPLDISDAIAVAITHAQR 153
L NGK +KE F++ +LN S K ++D AIT+A R
Sbjct: 161 LIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASR 212
>pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6)
pdb|1BLC| Beta-Lactamase (E.C.3.5.2.6) Complex With Degradation Products Of
Clavulanate
pdb|1BLH| Beta-Lactamase (E.C.3.5.2.6) Complexed With
[[n-(Benzyloxycarbonyl)amino]methyl]phosphonate
Length = 257
Score = 24.6 bits (52), Expect = 5.3
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 8/52 (15%)
Query: 110 LTGNGKAAKEQVAFMVKRLLNITS--------EIKPLDISDAIAVAITHAQR 153
L NGK +KE F++ +LN S K ++D AIT+A R
Sbjct: 160 LIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASR 211
>pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphylococcus Aureus Pc1
Length = 266
Score = 24.6 bits (52), Expect = 5.3
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 8/52 (15%)
Query: 110 LTGNGKAAKEQVAFMVKRLLNITS--------EIKPLDISDAIAVAITHAQR 153
L NGK +KE F++ +LN S K ++D AIT+A R
Sbjct: 206 LIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASR 257
>pdb|1INP| Inositol Polyphosphate 1-Phosphatase (1-Ptase)
(Inositol-1,4-Bisphosphate 1-Phosphatase) (E.C.3.1.3.57)
Complexed With Magnesium
Length = 400
Score = 24.3 bits (51), Expect = 7.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 87 LSLKILERIGNFSEYTPLQVKKALTGNGKAAKEQVAFMV 125
L KI+ R+G E T + K L GN K A E +A +V
Sbjct: 88 LGEKIIMRLGPTEEETVALLSKVLNGN-KLASEALAKVV 125
>pdb|1AVC| Bovine Annexin Vi (Calcium-Bound)
Length = 673
Score = 24.3 bits (51), Expect = 7.0
Identities = 21/69 (30%), Positives = 32/69 (45%), Gaps = 12/69 (17%)
Query: 81 AQFRGALS-------LKILERIGNFSEYTPLQVKKALTGNGKAAKEQVAFMVKRLLNITS 133
A RG LS L +++ I + +EY ++ KA+ G G + MV R S
Sbjct: 228 ASIRGELSGDFEKLMLAVVKCIRSTAEYFAERLFKAMKGLGTRDNTLIRIMVSR-----S 282
Query: 134 EIKPLDISD 142
E+ LDI +
Sbjct: 283 ELDMLDIRE 291
>pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mimicking Mutant
T356d Of Annexin Vi
Length = 672
Score = 23.9 bits (50), Expect = 9.1
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 51 LDCLLDRYEVNEVAIEDIF---FGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVK 107
+D + R V I F FG + + +K ++ G L+ IL + + Y Q+K
Sbjct: 386 IDIITHRSNVQRQQIRQTFKSHFGRDLMTDLK-SEISGDLARLILGLMMPPAHYDAKQLK 444
Query: 108 KALTGNGKAAKEQVAFMVKR 127
KA+ G G K + + R
Sbjct: 445 KAMEGAGTDEKALIEILATR 464
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.139 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 788,526
Number of Sequences: 13198
Number of extensions: 27376
Number of successful extensions: 67
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 28
length of query: 157
length of database: 2,899,336
effective HSP length: 81
effective length of query: 76
effective length of database: 1,830,298
effective search space: 139102648
effective search space used: 139102648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)