BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645497|ref|NP_207672.1| hypothetical protein
[Helicobacter pylori 26695]
         (57 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1JI4|A  Chain A, Nap Protein From Helicobacter Pylori >g...    23  8.6

>pdb|1JI4|A Chain A, Nap Protein From Helicobacter Pylori
 pdb|1JI4|B Chain B, Nap Protein From Helicobacter Pylori
 pdb|1JI4|C Chain C, Nap Protein From Helicobacter Pylori
 pdb|1JI4|D Chain D, Nap Protein From Helicobacter Pylori
 pdb|1JI4|E Chain E, Nap Protein From Helicobacter Pylori
 pdb|1JI4|F Chain F, Nap Protein From Helicobacter Pylori
 pdb|1JI4|G Chain G, Nap Protein From Helicobacter Pylori
 pdb|1JI4|H Chain H, Nap Protein From Helicobacter Pylori
 pdb|1JI4|I Chain I, Nap Protein From Helicobacter Pylori
 pdb|1JI4|J Chain J, Nap Protein From Helicobacter Pylori
 pdb|1JI4|K Chain K, Nap Protein From Helicobacter Pylori
 pdb|1JI4|L Chain L, Nap Protein From Helicobacter Pylori
          Length = 144

 Score = 22.7 bits (47), Expect = 8.6
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 1  MKANTIIL-VDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEWDQSYLLLYHP 55
          ++A+ I+L +   NF  ++K T   N + A + I    A + DD  ++   L +HP
Sbjct: 10 LQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHP 65



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.327    0.142    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 329,116
Number of Sequences: 13198
Number of extensions: 8023
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 1
length of query: 57
length of database: 2,899,336
effective HSP length: 33
effective length of query: 24
effective length of database: 2,463,802
effective search space: 59131248
effective search space used: 59131248
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)