BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644719|ref|NP_206889.1| pfs protein (pfs)
[Helicobacter pylori 26695]
(231 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JYS|A Chain A, Crystal Structure Of E. Coli MtaADOHCY ... 128 6e-31
pdb|1ECP|A Chain A, Purine Nucleoside Phosphorylase >gi|163... 47 2e-06
pdb|1K9S|A Chain A, Purine Nucleoside Phosphorylase From E.... 47 2e-06
pdb|1EVU|A Chain A, Human Factor Xiii With Calcium Bound In... 30 0.31
pdb|1FIE|B Chain B, Recombinant Human Coagulation Factor Xi... 30 0.31
pdb|1F13|A Chain A, Recombinant Human Cellular Coagulation ... 30 0.31
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex O... 27 2.0
pdb|1YAA|A Chain A, Aspartate Aminotransferase From Sacchar... 27 2.0
pdb|1DI0|A Chain A, Crystal Structure Of Lumazine Synthase ... 26 4.5
pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Comple... 25 9.9
pdb|1EPA|B Chain B, Epididymal Retinoic Acid-Binding Protei... 25 9.9
>pdb|1JYS|A Chain A, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
pdb|1JYS|B Chain B, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
Length = 242
Score = 128 bits (321), Expect = 6e-31
Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 2/229 (0%)
Query: 4 KIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTT 63
KIGI+GAM EE+T + + + + I LGG + G + E+ + S IGKV + L T
Sbjct: 12 KIGIIGAMEEEVTLLRDKIE-NRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGAT 70
Query: 64 SMILAFGVQKVLFSGVAGSLVKDLKINDLLVAIQLVQHDVDLSAFDHPLGFIPESAIFIE 123
++ ++ +G AG L LK+ D++V+ + HD D++AF + G +P +
Sbjct: 71 LLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFK 130
Query: 124 TSESLNALAKEVANEQHIVLKEGVIASGDQFVHSKERKEFLVSEF-KASAVEMEGASVAF 182
+ L A A+ E ++ G+I SGD F++ + F +A AVEME ++A
Sbjct: 131 ADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAH 190
Query: 183 VCQKFGVPCCVLRSISDNADEEANMSFDAFLEKSAQTSAKFLKSMVDEL 231
VC F VP V+R+ISD AD+++++SFD FL +A+ S+ ++S+V +L
Sbjct: 191 VCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKL 239
>pdb|1ECP|A Chain A, Purine Nucleoside Phosphorylase
pdb|1ECP|B Chain B, Purine Nucleoside Phosphorylase
pdb|1ECP|C Chain C, Purine Nucleoside Phosphorylase
pdb|1ECP|D Chain D, Purine Nucleoside Phosphorylase
pdb|1ECP|E Chain E, Purine Nucleoside Phosphorylase
pdb|1ECP|F Chain F, Purine Nucleoside Phosphorylase
pdb|1A69|A Chain A, Purine Nucleoside Phosphorylase In Complex With Formycin B
And Sulphate (Phosphate)
pdb|1A69|C Chain C, Purine Nucleoside Phosphorylase In Complex With Formycin B
And Sulphate (Phosphate)
pdb|1A69|B Chain B, Purine Nucleoside Phosphorylase In Complex With Formycin B
And Sulphate (Phosphate)
Length = 238
Score = 46.6 bits (109), Expect = 2e-06
Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 11/186 (5%)
Query: 18 ILELFGVDFEEIP-LGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLF 76
I E F D E+ + G + G Y ++I V +G ++ T +I FGV+K++
Sbjct: 28 IAETFLEDAREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIR 87
Query: 77 SGVAGSLVKDLKINDLLVAI-QLVQHDVDLSAF-DHPLGFIPESAIFIETSESLNALAKE 134
G G+++ +K+ D+++ + V+ F DH I + + ++ AL
Sbjct: 88 VGSCGAVLPHVKLRDVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALG-- 145
Query: 135 VANEQHIVLKEGVIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVL 194
I + G + S D F ++ ++ VEME A + V +FG +
Sbjct: 146 ------IDARVGNLFSADLFYSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTI 199
Query: 195 RSISDN 200
++SD+
Sbjct: 200 CTVSDH 205
>pdb|1K9S|A Chain A, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|C Chain C, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|B Chain B, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|E Chain E, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|D Chain D, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|F Chain F, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
Length = 237
Score = 46.6 bits (109), Expect = 2e-06
Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 11/186 (5%)
Query: 18 ILELFGVDFEEIP-LGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLF 76
I E F D E+ + G + G Y ++I V +G ++ T +I FGV+K++
Sbjct: 28 IAETFLEDAREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIR 87
Query: 77 SGVAGSLVKDLKINDLLVAI-QLVQHDVDLSAF-DHPLGFIPESAIFIETSESLNALAKE 134
G G+++ +K+ D+++ + V+ F DH I + + ++ AL
Sbjct: 88 VGSCGAVLPHVKLRDVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALG-- 145
Query: 135 VANEQHIVLKEGVIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVL 194
I + G + S D F ++ ++ VEME A + V +FG +
Sbjct: 146 ------IDARVGNLFSADLFYSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTI 199
Query: 195 RSISDN 200
++SD+
Sbjct: 200 CTVSDH 205
>pdb|1EVU|A Chain A, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1EVU|B Chain B, Human Factor Xiii With Calcium Bound In The Ion Site
Length = 731
Score = 29.6 bits (65), Expect = 0.31
Identities = 12/41 (29%), Positives = 21/41 (50%)
Query: 188 GVPCCVLRSISDNADEEANMSFDAFLEKSAQTSAKFLKSMV 228
G+P ++ + D +AN+ D FLE+ ++K K V
Sbjct: 329 GIPARIVTNYFSAHDNDANLQMDIFLEEDGNVNSKLTKDSV 369
>pdb|1FIE|B Chain B, Recombinant Human Coagulation Factor Xiii
pdb|1FIE|A Chain A, Recombinant Human Coagulation Factor Xiii
Length = 731
Score = 29.6 bits (65), Expect = 0.31
Identities = 12/41 (29%), Positives = 21/41 (50%)
Query: 188 GVPCCVLRSISDNADEEANMSFDAFLEKSAQTSAKFLKSMV 228
G+P ++ + D +AN+ D FLE+ ++K K V
Sbjct: 329 GIPARIVTNYFSAHDNDANLQMDIFLEEDGNVNSKLTKDSV 369
>pdb|1F13|A Chain A, Recombinant Human Cellular Coagulation Factor Xiii
pdb|1F13|B Chain B, Recombinant Human Cellular Coagulation Factor Xiii
pdb|1GGT|A Chain A, Coagulation Factor Xiii (A-Subunit Zymogen) (E.C.2.3.2.13)
(Protein-Glutamine Gamma-Glutamyltransferase A Chain)
pdb|1GGT|B Chain B, Coagulation Factor Xiii (A-Subunit Zymogen) (E.C.2.3.2.13)
(Protein-Glutamine Gamma-Glutamyltransferase A Chain)
pdb|1GGU|B Chain B, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1GGY|B Chain B, Human Factor Xiii With Ytterbium Bound In The Ion Site
pdb|1QRK|B Chain B, Human Factor Xiii With Strontium Bound In The Ion Site
pdb|1GGY|A Chain A, Human Factor Xiii With Ytterbium Bound In The Ion Site
pdb|1GGU|A Chain A, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1QRK|A Chain A, Human Factor Xiii With Strontium Bound In The Ion Site
Length = 731
Score = 29.6 bits (65), Expect = 0.31
Identities = 12/41 (29%), Positives = 21/41 (50%)
Query: 188 GVPCCVLRSISDNADEEANMSFDAFLEKSAQTSAKFLKSMV 228
G+P ++ + D +AN+ D FLE+ ++K K V
Sbjct: 329 GIPARIVTNYFSAHDNDANLQMDIFLEEDGNVNSKLTKDSV 369
>pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
Length = 258
Score = 26.9 bits (58), Expect = 2.0
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 29/215 (13%)
Query: 27 EEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKD 86
E++P N +K V+ NK+ IVAYS I + + T L + ++K+
Sbjct: 52 EQVPY--NKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKE 109
Query: 87 L----KINDLLVAI-----QLVQHDVDLSAFDHPLGFIPES-------AIFIETSESLNA 130
+ K+ L + V++D++L + P+S A F +T L A
Sbjct: 110 IGGIKKVKQRLKELGDKVTNPVRYDIELQYYS------PKSKKDTSTPAAFGKTLNKLIA 163
Query: 131 LAKEVANEQHIVLKEGVI--ASGDQFVHSKERKEFLVSEFKASAVEMEGAS-VAFVCQKF 187
K ++ E L + ++ SGD + K++ V++ A+ + VAFV K
Sbjct: 164 NGK-LSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPK- 221
Query: 188 GVPCCVLRSISDNADEEANMSFDAFLEKSAQTSAK 222
G ++ I N D +++ D + ++A++ K
Sbjct: 222 GQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMK 256
>pdb|1YAA|A Chain A, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
pdb|1YAA|B Chain B, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
pdb|1YAA|C Chain C, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
pdb|1YAA|D Chain D, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
Length = 412
Score = 26.9 bits (58), Expect = 2.0
Identities = 19/92 (20%), Positives = 38/92 (40%), Gaps = 7/92 (7%)
Query: 103 VDLSAFDHPLGFIPESAIFIETSESLNALAKEVANEQHIVLKEGVIASGDQFVHSKERKE 162
+DL+ F + + PE +IF+ S + N + +EQ + + + + + + +
Sbjct: 161 LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQG 220
Query: 163 FLVSEFKASAV-------EMEGASVAFVCQKF 187
F + A ++ S FVCQ F
Sbjct: 221 FATGDLDKDAYAVRLGVEKLSTVSPVFVCQSF 252
>pdb|1DI0|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
Length = 158
Score = 25.8 bits (55), Expect = 4.5
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 147 VIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCV 193
V+ + F SKE +F + FK VE A++ V ++ + V
Sbjct: 112 VVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIAALV 158
>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel
Bicyclic Lactam Inhibitor
Length = 305
Score = 24.6 bits (52), Expect = 9.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 11 MREEITPILELFGVDFEEIP 30
+++ I +++ FG DFEEIP
Sbjct: 282 LKKWIQKVIDQFGEDFEEIP 301
>pdb|1EPA|B Chain B, Epididymal Retinoic Acid-Binding Protein (Androgen
Dependent Secretory Protein) (B-Form)
pdb|1EPB|B Chain B, Epididymal Retinoic Acid-Binding Protein (Androgen
Dependent Secretory Protein) (B-Form) Complexed With
Retinoic Acid
pdb|1EPA|A Chain A, Epididymal Retinoic Acid-Binding Protein (Androgen
Dependent Secretory Protein) (B-Form)
pdb|1EPB|A Chain A, Epididymal Retinoic Acid-Binding Protein (Androgen
Dependent Secretory Protein) (B-Form) Complexed With
Retinoic Acid
Length = 164
Score = 24.6 bits (52), Expect = 9.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 119 AIFIETSESLNALAKEVANEQHIVLKEGVIASGD 152
A+ +E E+L AL +E H VL++ GD
Sbjct: 38 AMVVELKENLLALTTTYYSEDHCVLEKVTATEGD 71
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,117,042
Number of Sequences: 13198
Number of extensions: 39780
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 11
length of query: 231
length of database: 2,899,336
effective HSP length: 85
effective length of query: 146
effective length of database: 1,777,506
effective search space: 259515876
effective search space used: 259515876
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)