BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645498|ref|NP_207673.1| hypothetical protein
[Helicobacter pylori 26695]
(202 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 27 2.1
pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Co... 25 6.2
pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Co... 25 6.2
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Comp... 25 6.2
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 26.6 bits (57), Expect = 2.1
Identities = 35/177 (19%), Positives = 77/177 (42%), Gaps = 25/177 (14%)
Query: 24 DKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKWEKIYSD--VENFQHDLASLDQVE 81
++R+ LQ EK + + +EE + + + EK+ +D ++ + D+ ++
Sbjct: 940 EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999
Query: 82 LRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQRIAFKKIADRILIFSKDTDLIPA 141
+L + R LLE++ D+ L + +K + + +K +I
Sbjct: 1000 NKLTKE-------------RKLLEERVSDLTTNLAEEE---EKAKNLTKLKNKHESMISE 1043
Query: 142 L--KLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSSN--EVKDKLFSIRENL 194
L +L ++E R ++ + +L S DL +++ +L + E+K +L E L
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDL---HEQIAELQAQIAELKAQLAKKEEEL 1097
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 25.0 bits (53), Expect = 6.2
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 123 KKIADRIL-IFSKDTDLIPALKLARDEG-LRVDIADLS-------NRLSLLSQDLKYNSD 173
+K DRI+ +F KD D + + L +EG R+++A L N ++ + D+
Sbjct: 408 QKHLDRIVALFPKDVDRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIV--KT 465
Query: 174 KVRKLSSNEVKDKLFSIRENLTKTNWAL 201
KV K S DK + +T W L
Sbjct: 466 KVFKDFSELEPDKFQNKTNGITPRRWLL 493
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
Length = 847
Score = 25.0 bits (53), Expect = 6.2
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 123 KKIADRIL-IFSKDTDLIPALKLARDEG-LRVDIADLS-------NRLSLLSQDLKYNSD 173
+K DRI+ +F KD D + + L +EG R+++A L N ++ + D+
Sbjct: 409 QKHLDRIVALFPKDVDRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIV--KT 466
Query: 174 KVRKLSSNEVKDKLFSIRENLTKTNWAL 201
KV K S DK + +T W L
Sbjct: 467 KVFKDFSELEPDKFQNKTNGITPRRWLL 494
>pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
Length = 846
Score = 25.0 bits (53), Expect = 6.2
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 123 KKIADRIL-IFSKDTDLIPALKLARDEG-LRVDIADLS-------NRLSLLSQDLKYNSD 173
+K DRI+ +F KD D + + L +EG R+++A L N ++ + D+
Sbjct: 408 QKHLDRIVALFPKDVDRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIV--KT 465
Query: 174 KVRKLSSNEVKDKLFSIRENLTKTNWAL 201
KV K S DK + +T W L
Sbjct: 466 KVFKDFSELEPDKFQNKTNGITPRRWLL 493
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.135 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,097,492
Number of Sequences: 13198
Number of extensions: 40281
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 4
length of query: 202
length of database: 2,899,336
effective HSP length: 84
effective length of query: 118
effective length of database: 1,790,704
effective search space: 211303072
effective search space used: 211303072
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)